CI01000009_01264011_01272894 (GPR183A)


Basic Information

Item Value
gene id CI01000009_01264011_01272894
gene name GPR183A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1263607 ~ 1273340 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_01264011_01272894.mRNA
ATACTGCAAATCGTGATTAAATCTATGAATAGCAATGTTTACCACTATACAGTGAAACAATTATGAATTATTGCAACATGCTAAAGCAGTATATTAATTAAAAAAAAAGCAAAACTTTAATTTGGGCTACTATTAAAATTTTGATTAAGGATAAGTATTGTTCCTCAAAATCTCTTTCAAAAAGCAGTAATTGGCTTTGCAGAAGTATACCATTACACAATCACCGTTACCCCATCACAGAGAATTGTTTTCTACCCATTAATGTTTTTCTTGCAGTCAAGGTCTTTGTGAGGCCAGTTGTAGGACTGACAGGAAACACCTTTTGCTCGTCTGGTCCTCTATTCTTCGGATTTGCGCTGATGACTGACATAAAACTTCCATGCCATTCACAACGGTATCACAAACTTCCGTACATACACGTAAAAATAATTTGACCCGTTCATAAAATGAACGTTGTAATGACTTCGGGGGCGAGTGATTGCTTTGAAACCGCAGATTTCGTAACTGACTGTATGAAGATGGTAGCAGCTACAAACTCAACTCACAATGACTCTGACATTTGTACCAATCTGTACGACCATCGTAGTTGGGCACAGTATTTCTTGCCAGCAATATATTCTTTGATTTGCATTGTGGGACTGCTGGGCAATTTGTTGGCTTTCCATGTCATTTGGCCTAATTTAAAAAAAATCAACTCCACAACACTGTACTCAGCCAACCTGGTGGTGTCAGACATCTTGTTTTCGTTCGCTCTGCCCTTGCGTGTGGTTTACTATGCTTTGGGATTTCACTGGCCAATGGGGGAGGGTTTCTGTAAGGCTGTGGCGCTGCTGTTCTACATCAACATGTACGCCGGCGTCAACTTCATGACTTGTTTGAGCGTGGACCGTTTCATTGCAGTGGTGCTGCCGCTGCGCTTCTCCCGCTTCCGGAAGGTTCAGAAGGTGCGGTACATCTGTGTGGCCGTATGGGCCGTGGTGTTGATGCAGACGCTGCCTTTGCTGTCAATGCCCATGACGAACAACGAGCAAAGTGGTCACATAACATGTATGGAGTATCCCAACTTCGAGAAAATCGACAACCTGCCCGTCATGCTCATCGGTGCTGTGTTGCTCGGCTTCGGCTTCCCTGTGATCACCATCCTGGTGTGTTATTCGGCACTGTGCTCCAAGCTCCGCCTCCTGGCCAGGTCCAATAAACTGACAGAGAAGTCGGGTCGCAGTCGCAAGGCCATCGGTGTGATTTGCACAGTCATTCTCGTGTTTGTGGTGTGCTACAGTCCATATCACATCGACCTCCTGCAGTACATGATCAGAAAGCTGCGGTACAAGCCAGACTGCTCAGAACTGCATGACTTTCAAATCTCCCTTCACATCACCGTCTGCATGATGAATCTCAATTCATGCCTCGACCCTTTCATCTACTTCTTCGCCTGCAAAGGATACAAGAAGAAGCTTATAAGGCCTGTTGGGAGTCTAATTTGCATTGACCAGATTCGATACAGTGATGCAAGTACACTTATAATGTTTGCATATGACATACAGTTTGCTGTTGAGATATATTCTGCACCAGTTCATGCATTACAGGAAGTGGAGGGGCTTCACAGAAACCAAAAGAAAAATTCTAATCTAAATAAAGACATTGGCTTCATGACTTCCTCTATCTTAGATCGAAGCTCGGCAGCGATGGTGCGTTACAGTCATCACCCGTACAGCCGTCAGAACAGTTACCACGATGCCGACAACATGGATCTCTGAGGTTAGTACATTTCAGTGTTTTACTTTGTAATCTTGTAGAACAACAACAACAACAAAACCAATCATATCAGAAGACAAATGATGTAGGTCAAATTTATACAAAGTTAATCTAATAATAAGAAGGCCATTTATCAATAGTATGTATTCAAAAACTTTTGTAGAGTGGCATTATATCTAATAATTTAAGATACAGGATGACTTGATGAAAGATGTAAATTGATACTGCACAGATTTTTGACAAGTGAAAATAGCATTCTTCCTATTTTTTTCAAGTGATGCACTAGTATATTGATTGATATTCAATTTTTTTTTACTTTAACACTCATATTTCAGAAGTTTGTTTTCTTTTTCTTTTTAAGACTTTTTTGATGACTTCAAAAATTTCTCAAATTCAAATGAATAAA

Function

symbol description
gpr183a Predicted to enable G protein-coupled receptor activity and oxysterol binding activity. Acts upstream of or within definitive hemopoiesis; endothelial to hematopoietic transition; and negative regulation of Notch signaling pathway. Predicted to be located in plasma membrane. Is expressed in ventral wall of dorsal aorta. Orthologous to human GPR183 (G protein-coupled receptor 183).

NR:

description
G-protein coupled receptor 183-a

GO:

id name namespace
GO:0010818 T cell chemotaxis biological_process

KEGG:

id description
K04305 EBI2; Epstein-Barr virus induced gene 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_01264011_01272894.mRNA True 2161 mRNA 0.41 4 1263607 1273340

Neighbor

gene id symbol gene type direction distance location
CI01000009_01257207_01258196 GPR18 coding downstream 5411 1256477 ~ 1258196 (-)
CI01000009_01208525_01212914 NA coding downstream 49090 1208374 ~ 1214517 (-)
CI01000009_01138569_01164523 NA coding downstream 99070 1138249 ~ 1164537 (-)
CI01000009_01128947_01131135 NA coding downstream 132446 1128884 ~ 1131161 (-)
CI01000009_01121956_01122628 NA coding downstream 137820 1121187 ~ 1125787 (-)
CI01000009_01293719_01294750 NA coding upstream 19376 1292716 ~ 1294963 (-)
CI01000009_01327537_01337349 NA coding upstream 53972 1327312 ~ 1337846 (-)
CI01000009_01386589_01389680 NA coding upstream 113037 1383864 ~ 1390149 (-)
CI01000009_01394603_01397604 ZIC5 coding upstream 121218 1394558 ~ 1398473 (-)
CI01000009_01423940_01424233 NA coding upstream 150371 1423711 ~ 1424573 (-)
G52091 NA non-coding downstream 19363 1242744 ~ 1244244 (-)
G52089 NA non-coding downstream 22000 1241261 ~ 1241607 (-)
G52088 NA non-coding downstream 22821 1240255 ~ 1240786 (-)
G52087 NA non-coding downstream 23369 1239481 ~ 1240238 (-)
G52086 NA non-coding downstream 24150 1239101 ~ 1239457 (-)
G52096 NA non-coding upstream 10203 1283543 ~ 1283907 (-)
G52102 NA non-coding upstream 31929 1305269 ~ 1315480 (-)
G52160 NA non-coding upstream 152734 1426074 ~ 1431565 (-)
G52157 NA non-coding upstream 173154 1446494 ~ 1450926 (-)
G52098 NA other upstream 128592 1401932 ~ 1407627 (-)
G52410 NA other upstream 1278384 2551724 ~ 2562533 (-)
CI01000009_02885473_02893975 NA other upstream 1610348 2883688 ~ 2893975 (-)
CI01000009_03261739_03262843 NA other upstream 1987863 3261038 ~ 3262843 (-)

Expression


Co-expression Network