pdcd2 (pdcd2)


Basic Information

Item Value
gene id pdcd2
gene name pdcd2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 13462329 ~ 13464974 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248557.3
CGGACTGTATTAGGGCGGTGCAGGTGAAGCACGCTGTGTAGTGGagggtgtgttgtgctgaatatGGCTGAATGTGTTTGTGACTCTGAAGGGGAGACCGGGGTAGTTCTGGGGTTTCTGGAGGAGACAGAGCCCTGGCGGCTCCGCAGCCCTCAGTTCCCCAGTAAAGTGGGGGGGAGGCCGGCCTGGCTGAGCCAGCTGCAGCTCCCTGCCCCCGCCGAGCTGCTGTGTGAGCGGTGCCGCCTGCCCCTCGGGTTCCTCCTGCAGGTTTACGCTCCGGTTGTCGGATGTGAGCGAAGTTTCCACCGCACTCTGTTCGTGTTCTGCTGCAGGACCCCGGCCTGCTACACCACAAACGACAACAGCTGCTTTAAAGTGTTTAGAAGTCAGTTACCAAGGAAAAATGACTTTTACCCCTATGATCCCCCACCTGAGGAGGAGCCTGCTGACAGTGGGGACGAACATCGCATACTGAGCTCTGGAGTTAAGCTATGTTGGGTTTGTGGCTGCCCTGGACAGAAAGCCTGTTCACGCTGTCATTCAGTTACATACTGCAGCAAGGAGCACCAGACTATCCACTGGAAGCAGCATCACAAGAGAAAGTGCTGTACTGAAGGAGCTTCTTCTGCTTTAGAAGAACACAATCCCTTCCTGTTTCCTGAATGGGAGCTGGTTACAGAGCCTGAGGAACTACCAGTAAAAGATGAAGAATCACAGAATGAATCTTCAGAAGGAGCAGGGTGTGCTTCTTCAGAACTGGAGGAGACAGAGTTGGAGAGCATGGCCCTTCATGAAACCCAGGAGTCTAAAGTCTTTCAGAAGTTTAAGAAGTGCATAGCTACAGAACCAGAACAGGTCTTGCGATACTGTAGAGCAGGATCTCCACTTTGGGTGTCATCTAAGCATGTGCCCAGTAAAGCAGATATACCAAACTGCCAATGTGGTGCCCAGAGAAACTTTGAATTTCAGATAATGCCCCAGTTGCTGAATCACCTAAAAGTGGACAGGACAGATGCCAGTATAGACTGGGGAATGCTGGTCATCTACACATGTGCAGACAGCTGTGACCAAGGCAACAAATACTCACCAGAGTTCATCTGGAAACAAGACATTTCAGAGGATCGGGCTCATTAACTCCACAATGTAACAAAACATACATCACTTATcaatatttataatcttattcATAAAAGGTTATTTGAAACTAAGAAAa
>XM_022684653.1
CGGACTGTATTAGGGCGGTGCAGGTGAAGCACGCTGTGTAGTGGagggtgtgttgtgctgaatatGGCTGAATGTGTTTGTGACTCTGAAGGGGAGACCGGGGTAGTTCTGGGGTTTCTGGAGGAGACAGAGCCCTGGCGGCTCCGCAGCCCTCAGTTCCCCAGTAAAGTGGGGGGGAGGCCGGCCTGGCTGAGCCAGCTGCAGCTCCCTGCCCCCGCCGAGCTGCTGTGTGAGCGGTGCCGCCTGCCCCTCGGGTTCCTCCTGCAGGTTTACGCTCCGGTTGTCGGATGTGAGCGAAGTTTCCACCGCACTCTGTTCGTGTTCTGCTGCAGGACCCCGGCCTGCTACACCACAAACGACAACAGCTGCTTTAAAGTGTTTAGAAGTCAGTTACCAAGGAAAAATGACTTTTACCCCTATGATCCCCCACCTGAGGAGGAGCCTGCTGACAGTGGGGACGAACATCGCATACTGAGCTCTGGAGTTAAGCTATGTTGGGTTTGTGGCTGCCCTGGACAGAAAGCCTGTTCACGCTGTCATTCAGTTACATACTGCAGCAAGGAGCACCAGACTATCCACTGGAAGCAGCATCACAAGAGAAAGTGCTGTACTGAAGAAGAACACAATCCCTTCCTGTTTCCTGAATGGGAGCTGGTTACAGAGCCTGAGGAACTACCAGTAAAAGATGAAGAATCACAGAATGAATCTTCAGAAGGAGCAGGGTGTGCTTCTTCAGAACTGGAGGAGACAGAGTTGGAGAGCATGGCCCTTCATGAAACCCAGGAGTCTAAAGTCTTTCAGAAGTTTAAGAAGTGCATAGCTACAGAACCAGAACAGGTCTTGCGATACTGTAGAGCAGGATCTCCACTTTGGGTGTCATCTAAGCATGTGCCCAGTAAAGCAGATATACCAAACTGCCAATGTGGTGCCCAGAGAAACTTTGAATTTCAGATAATGCCCCAGTTGCTGAATCACCTAAAAGTGGACAGGACAGATGCCAGTATAGACTGGGGAATGCTGGTCATCTACACATGTGCAGACAGCTGTGACCAAGGCAACAAATACTCACCAGAGTTCATCTGGAAACAAGACATTTCAGAGGATCGGGCTCATTAACTCCACAATGTAACAAAACATACATCACTTATcaatatttataatcttattcATAAAAGGTTATTTGAAACTAAGAAAa

Function

symbol description
pdcd2 Predicted to enable metal ion binding activity. Acts upstream of or within erythrocyte differentiation; hematopoietic stem cell differentiation; and regulation of mitotic nuclear division. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in several structures, including common myeloid progenitor; digestive system; gill; heart; and hematopoietic system. Orthologous to human PDCD2 (programmed cell death 2).

NR:

description
programmed cell death protein 2

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K14801 TSR4; pre-rRNA-processing protein TSR4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248557.3 True 1213 mRNA 0.50 6 13462329 13464974
XM_022684653.1 False 1195 mRNA 0.50 6 13462329 13464974

Neighbor

gene id symbol gene type direction distance location
LOC103032026 ccsap coding upstream 52878 13403608 ~ 13409451 (+)
LOC103031709 acta1,act2,LOC108430668,LOC102689871 coding upstream 60690 13397781 ~ 13401639 (+)
abcb10 abcb10,LOC102798660 coding upstream 69292 13381873 ~ 13393037 (+)
trnat-ugu_90 NA coding upstream 114696 13347561 ~ 13347633 (+)
frmd6 frmd6,LOC107654939,LOC107736757,LOC107683538 coding upstream 163310 13271416 ~ 13299019 (+)
LOC103035225 rab1a,LOC103035225,LOC107601860,LOC107676578,LOC107666439,LOC105005759,LOC107725478 coding downstream 20546 13485520 ~ 13494058 (+)
sertad2 sertad2 coding downstream 76975 13541949 ~ 13594514 (+)
lgalsl lgalsl,LOC107601863,LOC107676594,LOC107666541,LOC107552938 coding downstream 143315 13608289 ~ 13613437 (+)
echs1 echs1,LOC107743519,LOC107676592,LOC107601864,LOC107666378 coding downstream 167224 13632198 ~ 13636389 (+)
fuom fuom coding downstream 175046 13640020 ~ 13645008 (+)
G216100 NA non-coding upstream 160282 13301385 ~ 13302047 (+)
G216073 LOC108263287,LOC108263288 non-coding upstream 224476 13205309 ~ 13237853 (+)
G216077 NA non-coding upstream 237224 13224809 ~ 13225105 (+)
G216064 pygl,LOC104938237 non-coding upstream 318938 13139244 ~ 13143391 (+)
G216058 NA non-coding upstream 333371 13128294 ~ 13128958 (+)
G216138 tbp,LOC107676577,LOC107725488,LOC107666436 non-coding downstream 736 13465710 ~ 13471415 (+)
G216139 NA non-coding downstream 8405 13473379 ~ 13474113 (+)
G216141 NA non-coding downstream 10162 13475136 ~ 13475336 (+)
G216143 NA non-coding downstream 14770 13479744 ~ 13480026 (+)
G216153 NA non-coding downstream 43888 13508862 ~ 13510402 (+)
trnay-gua_11 NA other upstream 146167 13316075 ~ 13316162 (+)
trnay-gua_10 NA other upstream 147129 13315112 ~ 13315200 (+)
LOC103038358 NA other upstream 149842 13308037 ~ 13312487 (+)
G216053 nin other upstream 358287 13091746 ~ 13104042 (+)
G215886 NA other upstream 746424 12710638 ~ 12715905 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other downstream 14202 13479176 ~ 13484371 (+)
spef1 spef1 other downstream 275539 13740513 ~ 13750306 (+)
gsto1 gsto1 other downstream 877258 14342232 ~ 14347333 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other downstream 1257426 14722400 ~ 14780313 (+)
borcs7 borcs7 other downstream 3539567 17004541 ~ 17007537 (+)

Expression


Co-expression Network