LOC103035225 (rab1a,LOC103035225,LOC107601860,LOC107676578,LOC107666439,LOC105005759,LOC107725478)


Basic Information

Item Value
gene id LOC103035225
gene name rab1a,LOC103035225,LOC107601860,LOC107676578,LOC107666439,LOC105005759,LOC107725478
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 13485520 ~ 13494058 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248563.3
TGGATGAAGATTCAGCCATTTTGGGTTTGAAGCGAGTAGCCTGTGAGTTCGGGGGAGCAGTTAGCCAACTATAGATACTTTGATACCGGCGGAGGAGAGAGTTTGTTGTTTTTACGCTTCATCTACGCGGACAGAAGCGCTATTTAAGAAGGAGCATTACTGCCACGGTGTCAAATCCACGATGAATCCTGAATAtgACTATTTATTCAAGCTGCTCTTGATCGGTGACTCTGGTGTTGGAAAGTCTTGCCTTCTCCTCCGATTTGCAgATGACACATACACAGAAAGCTACATTAGCACTATTGGTGTGGACTTCAAAATAAGAACTATAGAGTTAGATGGGAAAACCATCAAACTTCAAATCTGGGACACAGCAGGACAAGAGAGATTCCGCACAATCACGTCGAGCTACTACAGAGGAGCACACGGCATTATCGTAGTCTACGATGTTACAGACCAGGAGTCCTTCAATAATGTTAAACAGTGGCTACAGGAAATCGACCGCTATGCCAGTGAAAATGTTAACAAGTTATTGGTGGGAAACAAGTGTGacttaacaacaaaaaaagtggtGGACTACACAACGGCAAAGGAATTTGCTGACTCCCTTGGCATCCCTTTCTTGGAAACTAGCGCTAAGAATGCCACCAATGTGGAACAAGCCTTCATGACTATGGCTGCTGAGATCAAGAAGAGAATGGGTCCTGGAGCAACAGCTGGAGGCACGGAGAAGTCCAACGTGAAGATCCAGAGCACTCCAGTGAAGCCTGCCTCCGGAGGCTGCTGCTGAGGCCACCTCTCGCTTCTTTCCAAAGCCCTGGCCCCCAGAATCACAAGGAACAAGCCCCAATAAAACCAGAGAAAGACAGGTAGACCACTTTCAGAGAGACAAGAGTGAGATTGAGAGACAGGAAACGACTTAAGTTGCCTAAATTGTACTGTATGTAGCCGCACTACCAGAAAACATAGAAGAATCTGCCACCGTTCCGGCCCCTCCTCCTTCACAAGTTAAAGTAAAATGCTAAAAGGTCAGATTTTTGgtaatggtctggggctgctttgaaccacccccctccccacccCCAAAACGAGAGATTTCATTTTCACAcaactgtgtgtctgtgtgcaggTTTCTAAgaaatatatgtgtatttatctcACTGCATTCCTACTGCAGGTCTACTGTGGTCAAAACTCAATGactcttcttttttctgtcctttttatttcttctttctgtgattattttactgtttatattgGCATGTGTAGGTTTTTGTCCCCTTTACAGGTGTTTTGCCAATCTGCGTTTCAACCAACTGCACAAGCGTGGCTGTCCAATGTCAAAAAGTCTAGTGagatatatgtacatatacattatgtatatatatgtaagaTCTGAATTGCCAGTTCTGTAGAATTGAATACATTATTGAAGTAGTTTTACTTTTGAatcttttgcatttaatttgtgGCTGCAGACTATTGTAATTTTGTTGCGCTACATGTAACATTTAACAAacgagtaaaataaatattgtaccACCAGACTGTACAATATCAGATACGTCTGCAATTCTTGGTAGAACTTGTAgagaccatgtatgtgtttttgattatttattcaaCATTCATATGGAAACGTATTGTTCCAGTAATCTAAAAATCAATTTCAAATTAGCCATTACCTGTGGAATATCTTGCAAGTGGAACAACTGCATATAAAACACTATGTTCTCTTTTTCATAATAAAGGCAACTGAATTCTGCTTTGAA

Function

symbol description
rab1a Enables GTPase activity. Involved in several processes, including COPII-coated vesicle cargo loading; growth hormone secretion; and positive regulation of macromolecule metabolic process. Located in Golgi apparatus and extracellular exosome.

NR:

description
PREDICTED: ras-related protein Rab-1A

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07874 RAB1A; Ras-related protein Rab-1A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248563.3 True 1775 mRNA 0.41 6 13485520 13494058

Neighbor

gene id symbol gene type direction distance location
pdcd2 pdcd2 coding upstream 20546 13462329 ~ 13464974 (+)
LOC103032026 ccsap coding upstream 76069 13403608 ~ 13409451 (+)
LOC103031709 acta1,act2,LOC108430668,LOC102689871 coding upstream 83881 13397781 ~ 13401639 (+)
abcb10 abcb10,LOC102798660 coding upstream 92483 13381873 ~ 13393037 (+)
trnat-ugu_90 NA coding upstream 137887 13347561 ~ 13347633 (+)
sertad2 sertad2 coding downstream 47891 13541949 ~ 13594514 (+)
lgalsl lgalsl,LOC107601863,LOC107676594,LOC107666541,LOC107552938 coding downstream 114231 13608289 ~ 13613437 (+)
echs1 echs1,LOC107743519,LOC107676592,LOC107601864,LOC107666378 coding downstream 138140 13632198 ~ 13636389 (+)
fuom fuom coding downstream 145962 13640020 ~ 13645008 (+)
LOC103037925 LOC103037925,LOC108426815 coding downstream 218115 13712173 ~ 13715354 (+)
G216143 NA non-coding upstream 5494 13479744 ~ 13480026 (+)
G216141 NA non-coding upstream 10184 13475136 ~ 13475336 (+)
G216139 NA non-coding upstream 11407 13473379 ~ 13474113 (+)
G216138 tbp,LOC107676577,LOC107725488,LOC107666436 non-coding upstream 14105 13465710 ~ 13471415 (+)
G216100 NA non-coding upstream 183473 13301385 ~ 13302047 (+)
G216153 NA non-coding downstream 14804 13508862 ~ 13510402 (+)
G216165 NA non-coding downstream 37118 13531176 ~ 13531577 (+)
G216175 NA non-coding downstream 68429 13562487 ~ 13562709 (+)
G216278 NA non-coding downstream 221945 13716003 ~ 13716515 (+)
G216284 NA non-coding downstream 245491 13739549 ~ 13739809 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other upstream 1149 13479176 ~ 13484371 (+)
trnay-gua_11 NA other upstream 169358 13316075 ~ 13316162 (+)
trnay-gua_10 NA other upstream 170320 13315112 ~ 13315200 (+)
LOC103038358 NA other upstream 173033 13308037 ~ 13312487 (+)
G216053 nin other upstream 381478 13091746 ~ 13104042 (+)
spef1 spef1 other downstream 246455 13740513 ~ 13750306 (+)
gsto1 gsto1 other downstream 848174 14342232 ~ 14347333 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other downstream 1228342 14722400 ~ 14780313 (+)
borcs7 borcs7 other downstream 3510483 17004541 ~ 17007537 (+)
LOC111195981 tacc2 other downstream 3655284 17149342 ~ 17184251 (+)

Expression


Co-expression Network