LOC103037925 (LOC103037925,LOC108426815)


Basic Information

Item Value
gene id LOC103037925
gene name LOC103037925,LOC108426815
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 13712173 ~ 13715354 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248571.3
ATAGGTGGGAGCTCCGCGAGGCCGAGGGGGAGCGGAGAGGAGCGGCGGGGCCACGGCGGAGGGGAACAGCGGCGGAGCGGCGTGTGAAAGCGAGCGTGTGTTCTTGTGTTGGGAGTTTTAGCTTATGGCCCCTCTACCGTCCACCATGAGCTCCGTGCAAGGACCACTCGTCCAGGATGGCGAAGAGGAGACGGCGACTCAGGCAGGCGACAGGAGCGCGGCAAGGGGATGTAAGAGCAAGGCGGCGAGCCTTCCCTTCAGCGTGGAGGCGTTAATATCAGACAGGAGCACTTCCAGGACTTCATACCCCGCGGCGGAGCCCGGAGCGATGGCCCCGGCGCCCGGGGCTGAGGAGCGCCTGCGGCTCTCCCCCATGGCTCTGTACGCGGAGAGGAAAGTGGCGCTGGAGAGCGCGGCGAACTCGGGCACAAGAGGAGGCGCAGAGGAGGACAAGACACGGGGAGGGTGGTACCAGAGCCCCCCGTACACTTCCCCGCCAAGACACTCCAGTCCGACACCCTGCGCGCTCAGGAAGCACAAGAATAACCGCAAGCCGCGGACTCCGTTCACCACGGCGCAGCTGCTGGCGCTCGAGCGCAAGTTCCGGCAGAAGCAGTACCTGTCCATCGCAGAGCGCGCGGAGTTCTCTAGCTCGCTCAACCTGACCGAGACGCAGGTGAAGATCTGGTTTCAGAACCGCAGGGCCAAAGCCAAGAGACTACAGGAGGCCGAGCTGGAGAAGCTCAAGCTGGCGGCCAAGCCCGTGCTGCCGGCGCTCGCGCTCCCGTTCCCGCTGGCAGCGGGCTCTCCGGGCCTGTACGGGCACGCGGCGGCCTTCCCGCGGCCCGCGCTGCCGCTTCCCGGATTGTTCGGTGGACCTGTGACCTACGGAATGTACTATCTGTCCTAACCGAGCGTCAGTAACTGCTGGACCTGTGTTCCGATTTTATTACTCTGTCAATGGACCAACGAGTTTCAGCTCTTAAAGTAAAACAGGCCTCAAACAGGACGAAACAACCACTTCATTAAAACACACTGCAGAATCAGAAAATAGAGCTTCAGGATTCACAGCAAAACCTGCTCCATCCAGAATCCACCCAACCTGTTGCTGACACGGCGAACAAGGACCATACTCCATACTTAATTCAGCTCGGGTTGTTCTGTGACTTCTGCTGGTTTAAACAGTAGCTCATAGAAACTTTCAAAAATGAAGAGGGCATGTTTTAATCCGGAATATAATTATTTGCATTAATAAAGCCCCCCAAATGTCGTAAAGTTTTAGAAAAAAgcctaaacactttttaaaatataagagCCAAATAATCCCAGCTAATATTTACAAAGAATTAAGCGGATTGTCTTAAAGTGAACCATAATTCGCTTCTCCGCtggtttaaatgaattaaacgaAGGGAAGCTATAATTTCTATAAGGTGCTGCCAGCCTGGTTTTATTCGCGCTCACATCGAAGACTCTCCAGTTTCATTAGATTTCCAATTTCCATCTGACCCCAGACTGACGCTTTTACTGGGCTCCGTTTCGAAAGGACTCCGTCAGGCTCCATGTACCACAGCTAGAGTTTAACAGACTGTAAAATTAACCtctagattttttattattgtaaataagCGTATATATTAGCACCCAGCTATTTTCAACCACCTTTGAAATTACGAATAGACTTGCTGATATTTATACATtgtgtttacatttatattctgtaaattattgtatatatttgtacagacaaatttagaaaaataatcttttgtattgggaaaaaataaatttgaaataaG

Function

NR:

description
homeobox protein MSH-C-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043049 otic placode formation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09341 MSX; homeobox protein MSX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248571.3 True 1799 mRNA 0.51 2 13712173 13715354

Neighbor

gene id symbol gene type direction distance location
fuom fuom coding upstream 67165 13640020 ~ 13645008 (+)
echs1 echs1,LOC107743519,LOC107676592,LOC107601864,LOC107666378 coding upstream 75784 13632198 ~ 13636389 (+)
lgalsl lgalsl,LOC107601863,LOC107676594,LOC107666541,LOC107552938 coding upstream 98736 13608289 ~ 13613437 (+)
sertad2 sertad2 coding upstream 117659 13541949 ~ 13594514 (+)
LOC103035225 rab1a,LOC103035225,LOC107601860,LOC107676578,LOC107666439,LOC105005759,LOC107725478 coding upstream 218115 13485520 ~ 13494058 (+)
adam8 NA coding downstream 9238 13724592 ~ 13738969 (+)
LOC103040224 NA coding downstream 84424 13799778 ~ 13830392 (+)
LOC103036078 LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 coding downstream 151467 13866821 ~ 13870131 (+)
LOC103035759 zgc:153981,LOC103035759,LOC108426808,LOC108262675,LOC107725455,LOC107666543,LOC107601871,LOC107743612 coding downstream 154847 13870201 ~ 13875666 (+)
LOC111195973 dusp13a,LOC108426746,LOC107725429,LOC107666542,LOC108263393,LOC107743611,LOC107601810 coding downstream 166378 13881732 ~ 13887312 (+)
G216175 NA non-coding upstream 149464 13562487 ~ 13562709 (+)
G216165 NA non-coding upstream 180596 13531176 ~ 13531577 (+)
G216153 NA non-coding upstream 201771 13508862 ~ 13510402 (+)
G216143 NA non-coding upstream 232147 13479744 ~ 13480026 (+)
G216141 NA non-coding upstream 236837 13475136 ~ 13475336 (+)
G216278 NA non-coding downstream 649 13716003 ~ 13716515 (+)
G216284 NA non-coding downstream 24195 13739549 ~ 13739809 (+)
G216303 erlin1,LOC108263345,LOC108426813,LOC103476975,LOC103134047,LOC106944811 non-coding downstream 51183 13766537 ~ 13769434 (+)
LOC111195921 NA non-coding downstream 59752 13775106 ~ 13776806 (+)
G216307 NA non-coding downstream 75316 13790670 ~ 13791658 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other upstream 227802 13479176 ~ 13484371 (+)
trnay-gua_11 NA other upstream 396011 13316075 ~ 13316162 (+)
trnay-gua_10 NA other upstream 396973 13315112 ~ 13315200 (+)
LOC103038358 NA other upstream 399686 13308037 ~ 13312487 (+)
G216053 nin other upstream 608131 13091746 ~ 13104042 (+)
spef1 spef1 other downstream 25159 13740513 ~ 13750306 (+)
gsto1 gsto1 other downstream 626878 14342232 ~ 14347333 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other downstream 1007046 14722400 ~ 14780313 (+)
borcs7 borcs7 other downstream 3289187 17004541 ~ 17007537 (+)
LOC111195981 tacc2 other downstream 3433988 17149342 ~ 17184251 (+)

Expression


Co-expression Network