LOC103040130


Basic Information

Item Value
gene id LOC103040130
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 17109263 ~ 17130106 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249469.3
TTAACAGGTCTTGTTTTATTGCCTGTCTGCCATTTTTGGTGTAAGTTATTTCTTATTTCGATTCGTGAACCGTTTGCTAACCTAGCTATATAGTTCAACACAAGCTTTGTAGTAAATAATATTGATTACTAACACTGATAAACTaaatagttagctagttacGCTGGGTTAGGCTAGCTAACGCCAGCCAACGGACTccccaaagtaaaaaaaaaaagagctaaaatAGTCAATAGTcaattttaattagcttaagtttTGCCTAAATTGCAGTTGTTTAAGAGTAATGCACTCAAATAATCTAACGTTTTCCTGGGAGCAGCTCCCTGCATATTTGAGCTGTGCCGTTACATGTTTGGTCTGTATCGCTCTGAAACAAGAGAACCGCCCTACACCATTTCACCATCTATCTACACCTTCTTCCTGTTTGTTCTGTGAAGGAAACAAAAATTGCAGACTTAATTTAGCGCATTCTCTTAACATTGGTCTAGGAAAACAGTGTCGGTGTATGGAGCAGTTGTCTGCTATTAACTCTGCGTTATCCTGCTAAGCAGCAATCTCCACGTCCAATCTCTTATTTTCATTCCGACAAACTCTCAGGCTAAACTACCTTCCCCCTCCCTCCAtcgatccctccctctctccctctactgcgctctctctctaccactctcaaTTGCATTGGTCAGTAAAGTTCAGCTCCACACTAGAACTGGGATCAGCTTTCTTTGGGACGTACTCTCTCTCACCAGCGCTTAATTCAGTCAGCCACACCTGCTCGATTCACACACCAGGACCTCTTTCAGCATAGAGAAGATGCGCAGTATTACAGTAGTGTGAAAGGAGCatgatttaaaaagcatttacttTTCTGCCGTCTGCCTAAATGGGAACTGGAATGAGAAGAAAGCTGCTTGGGGTATTCAGCTTGTTGCTGCTTTTCATCGGGCCATGTACAACCACACATCCCTACTGTCCAGCAAAGGCAGCTCCACCAGACATAAATGGGCCTGCAAATGGGACTGTCCAGCAGATGTCACTTGATGGGTCTTTTTTGTCACAAATCACCCACTCTTTCCTGCGCACTGTCCAGCCTAATCCGTTCCCTAAAGATTTGCTTAGTACAATATCCAACTCAAGAGCCACAACTGAGACGATTCAACAGGTTCTGCGGTATGAGATAGGCTTCCTGGTGTGTGTTGCCATTGGAATCCTCTATATCCTCCTTATGCCTTTAATTGGCTTTTGTTTTGCCTGCTGCCGTTGCTGCGGCAATTGTGGGGGTCGGATGTACCAAAAGCAGACCAGGAAAATCCACTGCAAGCGAAGATTCTTTTATTGGGCTACTTGGCTTGTCACTCTAATTATACTTGCAGGGAATGTCTGCATGTTCTTAAGCAATAAATACACAGGAGATGGTGTGAGGAACGGTGTAGTTGAAGTTGATAACACGctcaaaaatctacaaaaatacgTCACCACTATTCCCAAGCAAATTGATCAAGTGGTGAATGAGAGCTTCGTTACTGTGGATGAAATCACATGTCATGTAAATGGAAGTGGCTTTTTTATTGGCGAACAAATCCAAAATGGTCTAAAAGCCCCTGTCATGTCAGCCTTGGACTCTGTTACAAAGATGgcacaagTGCTTAACAGTACCAGTTTGTTACTGCTGGACTTGAATAGCACTCAGCTCCAGGCAGAGCTGAATGCGCTGCAGGCTAATCTGACCTCAGTCAAGAATCGTATAAACGACACACTGCGGAACCCAAACTGCTTAAACTGTAACTTGTTTCAGTCGCAACTGGACAGCCTGTCCCTGGACACAAGCCTTAATCTGTCCTTCAAGACTGATCTCCAGTCTGCAGTGAACCAGGCTGAGAGGGCTAATCTGAATGCACAGATACAGAATGGGAAAGACTTCTTTGACAGCATTCCCCAAGTGGTGACAAATGAAACCAGAGACAACTTGCAGGgGGTCCAGAGTCAGCTGCAAGACATAAAGAGTCAAGTCTCACAGGTGACTACTGACCTTCCACTTGACCAATTGACCAGTATTTCTGACTCGCTGAAAGATGGACAGAGATACACAAAAGAGTACACTTCGACAGTCCAGAATGCAGAGTACATCAGGTGGAGTGTTGCGTTGGTCCTGTGCTGTTTGATTCTGTTGGTGGTAGTCTGTAATCTGCTTGGCCTTTTGCTTGGACCTGCTGGATTGCGGCCCAAGAGTGACCCCACTAACCGCTCCAGCACTGCTAACTGCGGGGGACTCTTCCTCATGGCGGGTGTGGGCTTCAGTTTCTTATTCTCCTGGATCTTCATGATAATAGTGCTGATACTCTTTGTCGTATTTGGAAATACCTACACCCTCCTCTGTGTGCCATGGCAGAGCAGGGAACTTTTTCAGcttATTGAAACTCCGGATTTGATTCCGGGATTCAACCTCCAGTTGTCTCAAAGTCTAGGACTAAAAGCTAACCTGACAGTCACTGAGATATACAATGACTGCCAAATGGACAAGTCCCTGTGGAACACGCTACATCTGGCAGAGACTTTTGACCTCAATGACCTTCTCAATGTGTCCAAATATAAAGTTCAGGTCATGGAAGCATTTGAGAGTGCTCAGATCAGTATACCCAACATCACTCTGCTGAACTCGGGAACAGAGAGCCAGCTGCGCAACTTCTCTGCCACAGCCAGCAGTGTGAACTTTACCAGCATCATTGAGAGGtTAAATACCTTTTCGAAAATTAATTTGGGTTCAACTGCAGATGGCTTGGATAAATTGGCTGACAACCAAACCAACATCACTGTTAAAGATGAACTCAGAAAAGAGGCAAATGACTTGAGATCCATCCAGACTTACCAGATTAATCTCACCATCAATCCTCTGTTGtggCAACTGAAGTCTAAAATTGAGAGGATCAGAGAAAACTTATCACAGATCAATAGTACGGTGGGGGATGTTCTGCAGAACGTCAGCTACGCTCAGAATTTTTTGAACAACAATGCAACACAAGTACTGAAATCGAAAACAAGTGAATTTATAGACGATCAGTTGGGAATCCTTACAGCATTCACTACATGGGCAAACCTTAcaATCACTGAGCAGGTGGGTCGCTGCAGGCCTGTGGCAGCGGCTGTGAACACAGCAGAGAATTTAATCTGTGCACAGTTAGTAGACTCACTGAATGCCTTTTGGTTCAGTTTGGGCTGGTGCATGGTCTTCCTCATTCCCAGCATTATCTTCTCAGTCAAACTTGCCAAGTTCTACCGCCGTATGAAGTTCACAGATGTGTACGAgaaccaCATAGTAATGGACCACATTCCAAGAGCTAACCTGAAACAGTACTGAAAGGGAGAAGACAAAGTACTGTAGTGTTCACTGTGACTGTGCTAAAAGCCTTAAAGCCTTAAAGAGTTCTCATTGCTAAATGGACTGATGAGTGAGATGTACACACACTGGATTCCAGCTTCCACTGCTGAATGAAAAAGGGAAATGCATGCCTCTTGGATTGAGTGCATTCCAGACGTGgtttaaaggttttattttgCGTAGCTTCCCCAGAGAGATGAGAACATAAGCGTGGAAGCTGTTAAAGCTGTTAAAACTCAGGGAGGGCCTTTTAAGATACTGaagtttttcatttcatttttttaaatgtttttagattgttATTTAATGACAGTTTGAAACTGTATTAATGCACTTTGTGGTTTTTCATGCAGTCAGGTCAGTATgtcataatttcagaaaatgtgCTTTGTTTAATTATCCATGCTACGGACAGTGTAGCTACTTATGTTTGGTTCTCATTCATCCagtcaataaaacatttttccacATCCA

Function

GO: NA

KEGG:

id description
K15602 PROM2; prominin 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249469.3 True 3853 mRNA 0.43 24 17109263 17130106

Neighbor

gene id symbol gene type direction distance location
ldb1 ldb1,ldb1a,LOC108442788,LOC108444470,LOC107585322,LOC107673939,LOC107707596 coding upstream 1556 17077039 ~ 17107707 (+)
polr1c polr1c coding upstream 41622 17063896 ~ 17067641 (+)
LOC103037825 ina coding upstream 53218 17051980 ~ 17056045 (+)
cnnm2 cnnm2,cnnm2a,LOC107673921,LOC107716327,LOC107585325,LOC107588659 coding upstream 80262 17010555 ~ 17029001 (+)
wbp1l wbp1l coding upstream 114855 16982053 ~ 16994408 (+)
nsmce4a nsmce4a,LOC108262367,LOC107716332,LOC107688307,LOC107707575,LOC107585317 coding downstream 10565 17140671 ~ 17145888 (+)
LOC103040431 NA coding downstream 57035 17187141 ~ 17261572 (+)
unc5b unc5b,LOC107588651,LOC107707543,LOC107688303 coding downstream 350305 17480411 ~ 17575186 (+)
LOC103043107 LOC108442891,LOC108263542 coding downstream 449092 17579198 ~ 17632034 (+)
parg LOC107683745 coding downstream 503670 17633776 ~ 17672861 (+)
G217122 pcgf6 non-coding upstream 48682 17058330 ~ 17060581 (+)
G217109 NA non-coding upstream 99465 17009574 ~ 17009798 (+)
LOC111196035 NA non-coding upstream 210869 16883025 ~ 16898394 (+)
G216941 smap1,LOC107588664,LOC107694205,LOC107585328 non-coding upstream 389782 16560852 ~ 16719481 (+)
G216953 NA non-coding upstream 621725 16485902 ~ 16487538 (+)
G217140 NA non-coding downstream 134024 17264130 ~ 17264431 (+)
G217222 NA non-coding downstream 264933 17395039 ~ 17395249 (+)
G217313 NA non-coding downstream 646660 17776766 ~ 17777086 (+)
G217359 NA non-coding downstream 969848 18099954 ~ 18161772 (+)
G217362 NA non-coding downstream 987096 18117202 ~ 18124261 (+)
borcs7 borcs7 other upstream 101726 17004541 ~ 17007537 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other upstream 2328950 14722400 ~ 14780313 (+)
gsto1 gsto1 other upstream 2761930 14342232 ~ 14347333 (+)
spef1 spef1 other upstream 3358957 13740513 ~ 13750306 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other upstream 3624892 13479176 ~ 13484371 (+)
LOC111195981 tacc2 other downstream 19236 17149342 ~ 17184251 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 874147 18004253 ~ 18039352 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other downstream 1181787 18311893 ~ 18317228 (+)
LOC103030769 LOC103030769 other downstream 1613100 18743206 ~ 18744327 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other downstream 1707238 18837344 ~ 18847028 (+)

Expression


Co-expression Network