nsmce4a (nsmce4a,LOC108262367,LOC107716332,LOC107688307,LOC107707575,LOC107585317)


Basic Information

Item Value
gene id nsmce4a
gene name nsmce4a,LOC108262367,LOC107716332,LOC107688307,LOC107707575,LOC107585317
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 17140671 ~ 17145888 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249474.2
AACAAACTCCAGAGGGTCTTGAACGCTGCACGAAACCCGGAACGAAACCGACTTCCGTGTTTATTTTACCGCGAAGACACAACTAGCTCAGTGCTTAGAGCTGGATTCTGGAAGCAGCCTCACTTTATAGCTGTTTATTAACTATAATCTTAAAAAGTAGATGGATTTAATGTTAGCGATatgtgtttccagatgtgtttCGTGGTGTCTGAGTCACTAGTGAAGCGCTAGTGTTAACTAGCCGCGCGGGAGCTGCAGAATCTCTGCGGCACCAGTTCAGCTCACTAATAACAGCAGCAGCGGGCAACTGAAGAATCTGACCACCGTTATTACATACAGAACCGCTACCGCTCTGTCGGGAGATGTCTGAGTCAAGGCGGAGAGTGAGCAGAGGAAGTCAGGAGGAGTCTGCTGCACATACCAATGGAGTAGGAGGACGCAGCAGGTCCGAGAGAGCAGCAGACACGGGTGATGAGGATGAGGGTGCTGGTCCATCAGGGATCCATGAGGAAGATGATGACCCGGCCCGTCGGAGGGAGATCAGAAGCCAGTACAGGGACCTCATCAACTCTGTCCAGCAAAATCGTGAGGACATGTTGAACCCTGCCAACAATAAGCTGATTGATGTGTTAGAAGAAGCCAACAAACTGTTTGCTAATGTCAGGCAAGCTCGAGAAGCTGCTTTGGATGCTCAGCTGCTGGTTCTTGCCACAGACCTGGGAAGGGAAAAAGCCAGCCAGCTCCATGCAGAGGGATCGTCTTTTGACCCTTCTGCATTTGCAGAGCATTTGttgtcCTTCATGGGTCTTAATCGCttggaagaagaggaggatgatcAAGAAGGCTTAGATGGATATTTGCCTCCAGATGCCTGGCAGAAACTTTCCAAAAGGGCagaacattgttttaaaacagcGCCGTCATTCCATTACTTgttGGGGTCATTTCTGGCTGAACCTCCACCACCACGACAGCGTGTTGAACGACAAAGGAAAGCTCCCAGCAAGGAAGCAAAACGAATGATGCCTACTCAGCTTAAGAAAATGGAAGAATCCCACCAGGAAGCCACAGAGAAAGAGGTGGAAAGGATTCTGGGGTGTCTTCGAAGTTACTACGCTGATGACCccgaGTCCCCCATTTCATATTATGAGTTTGTTGTGGATCCTGCCTCCTTCTCCCGGACAGTAGAGAACATTTTCCACACATCATTTCTTATCAGGGATGGCCTGGCAAGGATCTATCTGGATAGTGAAAAGCTTCCGTGCATAGctCCTGTTGAAGATGGTGAGATAGAGCCTAGTGGAAATGCCACCCGTCACCAGTGTGTCATTTCAATAAGCCCATCCACCTGGAAAGAGATCATTGAGGCCTTTGAAATCAAACAGGCCTTGATACCCACGGTACAGATGTTGACACAAGAAGGCTGATGAGATGAAAACCAAATGTccacaatgttcagttttaataAGTTCACTTTTAAGtaaaggattttatttttgtgaatgTTTGATTTTGATACAGTAAAATGCATGATTGGAATACCTTTATTGTAATATGAGTATGTTGCAATAATGGCattgtaaaataaagtttatataatcttaaaaaaaaa
>XM_007249475.3
TGAAACAAACTCCAGAGGGTCTTGAACGCTGCACGAAACCCGGAACGAAACCGACTTCCGTGTTTATTTTACCGCGAAGACACAACTAGCTCAGTGCTTAGAGCTGGATTCTGGAAGCAGCCTCACTTTATAGCTGTTTATTAACTATAATCTTAAAAAGTAGATGGATTTAATGTTAGCGATatgtgtttccagatgtgtttCGTGGTGTCTGAGTCACTAGTGAAGCGCTAGTGTTAACTAGCCGCGCGGGAGCTGCAGAATCTCTGCGGCACCAGTTCAGCTCACTAATAACAGCAGCAGCGGAACCGCTACCGCTCTGTCGGGAGATGTCTGAGTCAAGGCGGAGAGTGAGCAGAGGAAGTCAGGAGGAGTCTGCTGCACATACCAATGGAGTAGGAGGACGCAGCAGGTCCGAGAGAGCAGCAGACACGGGTGATGAGGATGAGGGTGCTGGTCCATCAGGGATCCATGAGGAAGATGATGACCCGGCCCGTCGGAGGGAGATCAGAAGCCAGTACAGGGACCTCATCAACTCTGTCCAGCAAAATCGTGAGGACATGTTGAACCCTGCCAACAATAAGCTGATTGATGTGTTAGAAGAAGCCAACAAACTGTTTGCTAATGTCAGGCAAGCTCGAGAAGCTGCTTTGGATGCTCAGCTGCTGGTTCTTGCCACAGACCTGGGAAGGGAAAAAGCCAGCCAGCTCCATGCAGAGGGATCGTCTTTTGACCCTTCTGCATTTGCAGAGCATTTGttgtcCTTCATGGGTCTTAATCGCttggaagaagaggaggatgatcAAGAAGGCTTAGATGGATATTTGCCTCCAGATGCCTGGCAGAAACTTTCCAAAAGGGCagaacattgttttaaaacagcGCCGTCATTCCATTACTTgttGGGGTCATTTCTGGCTGAACCTCCACCACCACGACAGCGTGTTGAACGACAAAGGAAAGCTCCCAGCAAGGAAGCAAAACGAATGATGCCTACTCAGCTTAAGAAAATGGAAGAATCCCACCAGGAAGCCACAGAGAAAGAGGTGGAAAGGATTCTGGGGTGTCTTCGAAGTTACTACGCTGATGACCccgaGTCCCCCATTTCATATTATGAGTTTGTTGTGGATCCTGCCTCCTTCTCCCGGACAGTAGAGAACATTTTCCACACATCATTTCTTATCAGGGATGGCCTGGCAAGGATCTATCTGGATAGTGAAAAGCTTCCGTGCATAGctCCTGTTGAAGATGGTGAGATAGAGCCTAGTGGAAATGCCACCCGTCACCAGTGTGTCATTTCAATAAGCCCATCCACCTGGAAAGAGATCATTGAGGCCTTTGAAATCAAACAGGCCTTGATACCCACGGTACAGATGTTGACACAAGAAGGCTGATGAGATGAAAACCAAATGTccacaatgttcagttttaataAGTTCACTTTTAAGtaaaggattttatttttgtgaatgTTTGATTTTGATACAGTAAAATGCATGATTGGAATACCTTTATTGTAATATGAGTATGTTGCAATAATGGCattgtaaaataaagtttatataatcttaaaaaaaaa

Function

symbol description
nsmce4a Predicted to be involved in DNA repair. Predicted to act upstream of or within DNA recombination and cellular response to DNA damage stimulus. Predicted to be located in chromosome, telomeric region. Predicted to be part of Smc5-Smc6 complex. Predicted to be active in nucleus. Is expressed in several structures, including alar plate midbrain region; head; immature eye; optic tectum; and pectoral fin bud. Orthologous to several human genes including NSMCE4A (NSE4 homolog A, SMC5-SMC6 complex component).

NR:

description
PREDICTED: non-structural maintenance of chromosomes element 4 homolog A

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0030915 Smc5-Smc6 complex cellular_component

KEGG:

id description
K22825 NSMCE4, NSE4; non-structural maintenance of chromosomes element 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249474.2 True 1612 mRNA 0.46 11 17140674 17145888
XM_007249475.3 False 1579 mRNA 0.46 11 17140671 17145888

Neighbor

gene id symbol gene type direction distance location
LOC103040130 NA coding upstream 10565 17109263 ~ 17130106 (+)
ldb1 ldb1,ldb1a,LOC108442788,LOC108444470,LOC107585322,LOC107673939,LOC107707596 coding upstream 32964 17077039 ~ 17107707 (+)
polr1c polr1c coding upstream 73030 17063896 ~ 17067641 (+)
LOC103037825 ina coding upstream 84626 17051980 ~ 17056045 (+)
cnnm2 cnnm2,cnnm2a,LOC107673921,LOC107716327,LOC107585325,LOC107588659 coding upstream 111670 17010555 ~ 17029001 (+)
LOC103040431 NA coding downstream 41253 17187141 ~ 17261572 (+)
unc5b unc5b,LOC107588651,LOC107707543,LOC107688303 coding downstream 334523 17480411 ~ 17575186 (+)
LOC103043107 LOC108442891,LOC108263542 coding downstream 433310 17579198 ~ 17632034 (+)
parg LOC107683745 coding downstream 487888 17633776 ~ 17672861 (+)
LOC103043721 ogdhl,LOC108442924,LOC107683740,LOC108263326,LOC107707496 coding downstream 531266 17677154 ~ 17700496 (+)
G217122 pcgf6 non-coding upstream 80090 17058330 ~ 17060581 (+)
G217109 NA non-coding upstream 130873 17009574 ~ 17009798 (+)
LOC111196035 NA non-coding upstream 242277 16883025 ~ 16898394 (+)
G216941 smap1,LOC107588664,LOC107694205,LOC107585328 non-coding upstream 421190 16560852 ~ 16719481 (+)
G216953 NA non-coding upstream 653133 16485902 ~ 16487538 (+)
G217140 NA non-coding downstream 118242 17264130 ~ 17264431 (+)
G217222 NA non-coding downstream 249151 17395039 ~ 17395249 (+)
G217313 NA non-coding downstream 630878 17776766 ~ 17777086 (+)
G217359 NA non-coding downstream 954066 18099954 ~ 18161772 (+)
G217362 NA non-coding downstream 971314 18117202 ~ 18124261 (+)
borcs7 borcs7 other upstream 133134 17004541 ~ 17007537 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other upstream 2360358 14722400 ~ 14780313 (+)
gsto1 gsto1 other upstream 2793338 14342232 ~ 14347333 (+)
spef1 spef1 other upstream 3390365 13740513 ~ 13750306 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other upstream 3656300 13479176 ~ 13484371 (+)
LOC111195981 tacc2 other downstream 3454 17149342 ~ 17184251 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 858365 18004253 ~ 18039352 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other downstream 1166005 18311893 ~ 18317228 (+)
LOC103030769 LOC103030769 other downstream 1597318 18743206 ~ 18744327 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other downstream 1691456 18837344 ~ 18847028 (+)

Expression


Co-expression Network