CI01000009_01394603_01397604 (ZIC5)


Basic Information

Item Value
gene id CI01000009_01394603_01397604
gene name ZIC5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1394558 ~ 1398473 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_01394603_01397604.mRNA
AGAAAGAGTTTCATGAACGTAGCTTCTTGCTGTTTCTGTTTATTAAGGCGTAAAGCTTTTTTGTTTTGCATACACACAAAAAATATATGATATTGCTTTATGTGTCTAATAATTTAGTTTTACCTATATACTTTAAAACAATTAAAAACAAAGTGTGGTATAGCATGTGTATGTATCCCGCTGATTATTTTATTTTAATTAATTTTATTTTATTTGCATTATCCCCAGTTGATCCTTAGTCTGTTTATTTGATGAATTTATTTTTATTTGCCAATGCTATGAAAATTATTTGATGAAAAAAAAAAAAAATAATAATAATAATTTTCCCGGATTAATGCTCGACAACGTTTTAATTATTATTTTTATTTATTTGAATTTAATTTAAAAATATATATACCAAACGGTGTGTGGAGTTTTGCACAAGATGCTCCAGCGTGTGTAGTGTCACTATTTTGCGCGCAGAGAAAAACAACATCCTTCCACGTGTGTATGTGTCTCGGTAAACAGATTTGCCTGTAAGTTTGTGAGCACAACTTTCTGGAGTGAACAGTGATGAAGAGAGTGAGGGGGCGGAACCCCGCTGAGCCTCTGCGCTGAAAGACAGCCAATCGCTTCGTTCTCTTAACTGCCAGTCACCGAAATCTGTCCAATACCCGCAGTGCCATTTCTAAACTCTATTCCCCACTGTGTCCTCCAACTGTTGTATGTTCTGCCAATCGCTTGAGGACAGAGTGGGAAAAGGAGCAAGCAGAGTTAGAGGCAGGACAAAAGAAGTTCTATAGACGGCCATATACATATATTTTAATGGTTTCAGAAGGCCCGTAGTTGGCGAAAACAATAGCGGTGAGCGTGGACATGACAGCGTAGTGATGGAGCCCCCTTTAAGCAAGAGGAATTCGGCGATAAGATTAGCGGATTTGGCATCGACTCAAGCCCTTCCTCATCAGAATATGACAGGCTTCCCGGGGATAGGGGGGCATCACCCGCACTCCCACCATGCCCACCTCCACCCTGGGGAGATGGGCAACGACCCCGGAGTGGCTCTCACTCCATTTGGACCCGAGCACATGGCACAGACCAATGCTCTCAAACTTAGTCCCTCTCAGCCTGTTCAAAGCCATCCCGAAGCCCAGACCGCGGCATCTTTCACGTCTTCTCAGACCACAGTTGGTTTCCCCGTGGCTCACCCCCACACAGGCTACACCACCAGCAGGGACTTCATCCTCAGGAGAGAGCTCTCAGCCTCTGCTATGCATGCACTTGGCGACCAGCATAGTTCCGCCTCCTCCCCTCATCACCATGGCATGTTCATTTCCCCAACAGGTGCTTATGGGCACGCGGAAGGTGGTGCCCATCCACTTTTCTCTGGACTGCACGAGCAAGCGGCCCCAGGTGCCCACCACCACCACCACCATGCCCTCAACGGGCAGATGCGTCTGGGTCTACCGGGGGACATCTACGGCAGGCCAGAGCACTTCGGCCACAGGCCCGAGCACTATGGATCTTCTTCACTTCACGGCTACAACTCCATGAACTTAAATGTGAACCTCGCCACGGCTCCTCACGGAGCCACGGGGGCGTTTTTGCGATACATGCGGCAGCCCATCAAGCAAGAGCTCATCTGCAAGTGGATTGACCAGGAGCAGACGTCCAAGAAACCCTGCTCAAAAACTTTCAGCACCATGCACGAGCTCGTCAACCATGTCACGGTGGAGCACGTCGGGGGACCGGAGCAGAGCAGTCACGTCTGCTTTTGGGAAGAGTGTCCGCGCGAGGGAAAGGCGTTTAAAGCCAAGTACAAACTGATCAATCACATTCGCGTGCACACGGGCGAGAAGCCGTTCCCGTGCCCCTTTCCCGGTTGTGGCAAAGTATTCGCGCGCTCGGAAAATCTCAAGATTCACAAGAGGACGCACACAGGTGAGAAGCCGTTCAAATGCGAGTTTGATGGCTGTGACAGGAAATTCGCGAACAGCAGTGACAGGAAGAAGCACTCTCACGTCCACACGAGCGATAAGCCTTACTTCTGTAAAGTGAGGGGTTGTGACAAGTCGTACACACACCCGAGCTCTCTACGCAAACACATGAAGGTTCACTGCAAGTCTCCTCCGCCCCCTTCCGCCAACACAGGCTCCTCTTACCATCCCTCGTCTACGACTATCGGTGATGCCCTCTCACCAAACCTGGATCCCCACAGGAACCGTTCGTCGAACCTTTCCCCTCAGGTGACCAACCTAAACGAATGGTACGTGTGCCAAGGGAGTGCTGGACCAAACAATCTACACACCCCCTCCAGCGATGTGCCAACGTCGGAATCCGACGACGAGGACTCTTTCAGACACACAGATCCAAGGGCAATGCTCTGATGTGAACAGCAAGGAATATATTCATTGTGAATTGTCCACATTAAA

Function

symbol description
zic5 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within nervous system development and regulation of cell population proliferation. Predicted to be active in nucleus. Is expressed in several structures, including apical ectodermal ridge pectoral fin bud; central nervous system; lateral plate mesoderm; neural plate; and optic vesicle. Orthologous to human ZIC5 (Zic family member 5).

GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process

KEGG:

id description
K09226 ZIC5; zinc finger protein ZIC 5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_01394603_01397604.mRNA True 2411 mRNA 0.49 2 1394558 1398473

Neighbor

gene id symbol gene type direction distance location
CI01000009_01386589_01389680 NA coding downstream 4409 1383864 ~ 1390149 (-)
CI01000009_01327537_01337349 NA coding downstream 56712 1327312 ~ 1337846 (-)
CI01000009_01293719_01294750 NA coding downstream 99595 1292716 ~ 1294963 (-)
CI01000009_01264011_01272894 GPR183A coding downstream 121218 1263607 ~ 1273340 (-)
CI01000009_01257207_01258196 GPR18 coding downstream 136362 1256477 ~ 1258196 (-)
CI01000009_01423940_01424233 NA coding upstream 25238 1423711 ~ 1424573 (-)
CI01000009_01541031_01546978 NA coding upstream 142421 1540894 ~ 1547804 (-)
CI01000009_01550846_01564109 TMTC4 coding upstream 152311 1550784 ~ 1565168 (-)
CI01000009_01596212_01681960 NALCN coding upstream 197228 1595701 ~ 1682027 (-)
CI01000009_01743393_01795392 FGF14 coding upstream 344645 1743118 ~ 1795461 (-)
G52102 NA non-coding downstream 79078 1305269 ~ 1315480 (-)
G52096 NA non-coding downstream 110651 1283543 ~ 1283907 (-)
G51951 NA non-coding downstream 124533 1267951 ~ 1270025 (-)
G52094 NA non-coding downstream 127946 1266178 ~ 1266612 (-)
G52160 NA non-coding upstream 27601 1426074 ~ 1431565 (-)
G52157 NA non-coding upstream 48021 1446494 ~ 1450926 (-)
G52244 NA non-coding upstream 290599 1689072 ~ 1703392 (-)
G52267 NA non-coding upstream 494506 1892979 ~ 1893288 (-)
G52274 NA non-coding upstream 575729 1974202 ~ 1975828 (-)
G52098 NA other upstream 3459 1401932 ~ 1407627 (-)
G52410 NA other upstream 1153251 2551724 ~ 2562533 (-)
CI01000009_02885473_02893975 NA other upstream 1485215 2883688 ~ 2893975 (-)
CI01000009_03261739_03262843 NA other upstream 1862730 3261038 ~ 3262843 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014666 zic5,LOC102789084 coding CM030128.1 CM030128.1 26154064 ~ 26160288 (-)