LOC103045557 (LOC108442258)


Basic Information

Item Value
gene id LOC103045557
gene name LOC108442258
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 17761326 ~ 17766791 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249487.3
AGCAGAGTGGACGTGATTTTTACGGGACAATGGATACCATTTGTAATGTTCTTGGTTTGGGATTGTTGCTTCTCTCTGTAAAACAGATCAACTCAAATGATGTACAGTGTTTGGCTGGATGTAGCTGCACGACCAGTCGCCAAGGAAGGTCTCTCTTGTGCATGGAAACACCTTTATCGAGGATACCTGAAGATATACCTGAGGATTTCACTAAAATCCGGATTGAGAAATCTCACCTGACTGAAATTCCTAAGAGTGCATTCTCTCGTTATAAATCACTGGAGAATCTCTGGCTAAACTTTAACGATATcactataattaatataaagagTCTACAGGGGTTAAATAATCTGACTGAGCTCAGGCTGGAGGGGAATAAACTGAGCTCGGTTCCATGGACAGCATTTGAGGACGCACCCAGCCTGAAGATCCTGGACCTGAAGCACAACCGCCTGGATGTTCTGCCTGAACACGCACTGAAATTTCTGCCAGGTCTGACCTACTTAGACTTATCCTTCAATCAGCTTACAGTCATTTCTAAAGACGTGTTCCTGAAGTGGCCTCTGTACGACcgtgtttttaagagtgcagagCGGGAAACCGTGCCAACCAACGTGGTTCTGGCTCTTCACGAGAACCCCTGGCAGTGCGACTGCCGCCTCAGAGGGTTTGTGGAGTTTGTGATGTCACTAAGCCCACCCATCATCCTGATGAACTCCTACCTAAGCTGCAGTGGCCCCGAGTACATGGCGGGAAAATTCTTCCACGAGGTCGAGCTAAAGACTTGCATCAAACCCGTAGCGACTAGTCCGACCACCAACATTAGCATGCCGCTAGGGGCAAACGTCACCCTGACGTGCTTCGCGATGGCCAGACCAGAACCAGCTGTCTGGTGGACATATGGTCTTAAGATACTAAGAGGATTTCATGAACTTCAGACCCGTGTGAATGAAGAGACAGTCAAGTCTGAGCTGATTATTCCATCCCTTCACTTAGCTGATCGTGGAGTGTACACCTGCACAGCCAACAACTTCATCGGCAATTCATCTGTCAGCATTCTGGTGGACGTTAAATCTCTTGACCAGTCAAATCCCCGTTCCCCAGCATATCCTGCTACAGCACCTGAGGAGAATGTTTACATTGATATCCGGATTGCCAAGCAGACGGTATACGGCATCACTATTGAGTGGTATGCTGTGACAGAAAACCCATCAGAGACCTGGTTCAGCATCCACTTCGGCAGATACGACACACCCAAAAAGGAGCTGATCTATATTGGCCCTGGTATCAACACCTACTCAGTTACAGACCTGCTGCCGGCCACTAAGTATGACATCTGTGTCACTCTAAAGAACCAAGCCCCCCGTAACGGTCAGTGCATTGTGTTTGTGACGGGCAGCGACATGAGCGAGATGGAGCAGAGAGAGAAGCTCATTCATATCGTGGTCATTGTGTTAGCTATGGTGCTGGCTGTGCCTGCAGGAATGTATGCCTGCACTACAGACACTAAGTTCCATTGCTTCGATCGTGGATTGGAGACGTGGAGGAACTGGAGGCGGGCAGAGCAAACGCACAGGCCGGATGAGGGGCATGGGACCTTTGATAGCCTCCAGGGTGCCAGCGATGAAGGCCTCTGCAAAGATTCCAACGAGGGACACAACACTCGCAGAAGATCTGAAGATAAAATCCAGAAAAACAAACCCTCAACACAGCTGTACTGATTTTACATACACTCGTAGACCATAATTTACAATTATGAATGTAGGGCAGGGACGGCTCAGTGGTTAAAGCACTGGGTTATTGATGACTGGGGTGTGGCTTCAATGCCAGGGATTGGGGTTTTAAAACATATGCCCAGCTACCACTGTTGACCTATTAATTAAGCCCCATAACCCGCACTGCTCCCCGGGAGCTGTAGCAAGGCTGTACACCACTCCAGACACATGTGTCctctatatacattatatacatatttatatatactatatactatatacatatttcttgtTCATATGAAGTAGTG

Function

NR:

description
PREDICTED: leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 2

GO: NA

KEGG:

id description
K24491 LRIT; leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249487.3 True 2023 mRNA 0.48 3 17761326 17766791

Neighbor

gene id symbol gene type direction distance location
LOC103045248 lrit1a,LOC108442250,LOC107585312,LOC107673966,LOC107716298,LOC107707479,LOC107588643 coding upstream 530 17755968 ~ 17760796 (+)
LOC103043721 ogdhl,LOC108442924,LOC107683740,LOC108263326,LOC107707496 coding upstream 60830 17677154 ~ 17700496 (+)
parg LOC107683745 coding upstream 88465 17633776 ~ 17672861 (+)
LOC103043107 LOC108442891,LOC108263542 coding upstream 129292 17579198 ~ 17632034 (+)
unc5b unc5b,LOC107588651,LOC107707543,LOC107688303 coding upstream 186140 17480411 ~ 17575186 (+)
LOC103046358 LOC108442959,LOC108262760 coding downstream 33950 17800741 ~ 17809379 (+)
cuedc2 cuedc2 coding downstream 375804 18142595 ~ 18149799 (+)
LOC103023375 LOC108443064,LOC108263659,LOC105910124 coding downstream 435547 18202338 ~ 18212333 (+)
LOC103023691 spock2,LOC108443083,LOC107668819,LOC108262742,LOC107673954 coding downstream 466418 18233209 ~ 18287507 (+)
LOC103025593 LOC108443100,LOC108263458 coding downstream 555799 18322590 ~ 18337821 (+)
G217222 NA non-coding upstream 366077 17395039 ~ 17395249 (+)
G217140 NA non-coding upstream 496895 17264130 ~ 17264431 (+)
G217122 pcgf6 non-coding upstream 700745 17058330 ~ 17060581 (+)
G217109 NA non-coding upstream 751528 17009574 ~ 17009798 (+)
LOC111196035 NA non-coding upstream 862932 16883025 ~ 16898394 (+)
G217313 NA non-coding downstream 9975 17776766 ~ 17777086 (+)
G217359 NA non-coding downstream 333163 18099954 ~ 18161772 (+)
G217362 NA non-coding downstream 350411 18117202 ~ 18124261 (+)
G217368 NA non-coding downstream 385410 18152201 ~ 18154348 (+)
G217369 NA non-coding downstream 387614 18154405 ~ 18158027 (+)
LOC111195981 tacc2 other upstream 577075 17149342 ~ 17184251 (+)
borcs7 borcs7 other upstream 753789 17004541 ~ 17007537 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other upstream 2981013 14722400 ~ 14780313 (+)
gsto1 gsto1 other upstream 3413993 14342232 ~ 14347333 (+)
spef1 spef1 other upstream 4011020 13740513 ~ 13750306 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 237462 18004253 ~ 18039352 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other downstream 545102 18311893 ~ 18317228 (+)
LOC103030769 LOC103030769 other downstream 976415 18743206 ~ 18744327 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other downstream 1070553 18837344 ~ 18847028 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other downstream 1393862 19160653 ~ 19216989 (+)

Expression


Co-expression Network