LOC103046358 (LOC108442959,LOC108262760)


Basic Information

Item Value
gene id LOC103046358
gene name LOC108442959,LOC108262760
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 17800741 ~ 17809379 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249490.3
GTGAGAGCAGCCGGCCGGCCGCAGctctaagagagagagagagagagagagagagagagagagagagagagagagagagaaaagagagatgtAGAGCTAGTTTAGCTGTGTAAGTTTAGGACACGTTTACACAGGACTTGGACGCATAATGTcatgagttagctagctagttaaacaTTTACCTAAAAGTCTTTATTTAGGGAACTTTAAGCGGAGAACtgaaagcgagaaagagagatgatAAAGGAGTTTTAAAGGAGCTTTCTGCCTGTACTTCTTAACTACCGTTTGGAGTATTTTAAAAAGGAGAAGcagcgctctctctgtctctcgctgtgtgtgtgtgcgtgcgtttATGTgcgtgtgtttattatatatgtgtgtgtggagcgcGAGGCAGATGTTGTTGCCGGGCGCGCGACTGCTGCCACGCGGGAGCCCGTAAAgcgaagaggagaagagaaagGTCAGCTCTGTGTCATGTCCTGACCTGGGATGAACCCGAATGCTGTTTGAGTCAGCATCCGACTGTCTGGCACCGGTGAACAACTTTTCTTAAAGGCCCTGGAGGAAATTCCAATCCCTCGTGCTGAACAGAAACCAGGTGAAGAATGAGGAATAAATATGCCATCCTTATCATCTGCATTGTGGCACTCGTCATCATTGAAAAGGAAAACAATATCATATCAAGGGTCTCTGACAAACTCACACTCCGACAGACAGGGCAGACTCCGGAGCCTCCACCCTTCTACAATGGCACCAGTGCACCTGTGGTCGTGGAGTACGATGCTGAAGGCGATGACAACGCCACCCAGTTTCTAGAGGCTGGTGACGGCAGTCAGAAGCACATCCTCTTGTTGGCTGCCACACGCACTGGATCCTCCTTCGTGGGCGAGTTCTTTAACCAGTTGGGATCTAACATGTTCTACCTCTTCGAACCGCTGTGGCATGTTGAGAGGATGCTTTCGCAGGACATGGACATCCCCAATGCCACGGTTTCCTCCTTGGCCTACAGAGACGTGCTGCTGAGCCTGTTCTTGTGTGACTTCTCTTTGCTGGAGCGCTTCATCAGCCCAACCCCTCAGGAACACGTGACCCCTGCACTGTTCCGCAGAGAGTCCAGCATGGCTCTGTGTGAGGAGCAAGTTTGCTCACCAgtagtaaaacatttatttgagaGATATCGCTGCAAGACACGGCGTTGCGGACCCCTCAACCTGACCTTAGCATCAGAGGCCTGTCTGGGAAAGGAATTCAGAGCTATCAAAACGGTAAGGGTGCGGCAGCTGGAGACACTGCGCTTGCTAGTGGAGGACCCCAGATTAGATATCAAAGTCATACAGTTGGTGAGAGACCCCCGTGCCATTTTGGCCTCGAGAATGGTGGCCTTCTCCAATAAGTATCAAACCTGGAAGAGCTGGGCAGTGAACGGAGAGGTGCCCATAGAAGATGAAGAGGTAAAACGGCTGCAAGGGAACTGCCAACAAATCCGCATGTCTGCCGAGCTGGGCCTGAGCCGGCCAGACTGGTTGGAGAACCGCTACATGCTAGTGCGCTATGAGGACATTGCCAGGTACCCCATGCAGAAAGCAGCTGAAATGTACAGGTTTACTGGGATTCCCTTCACATCACAGGCGAGGAAATGGATTCTTAAGAACACCCACGCTTCAGAGGTTGCCAGTGGGGTGTACTCTACACAGAAAAACTCATCTGAACAGGTGGAAAAGTGGCGCTTCAGTATACCCTTCAAATTAGCACAAGTTGTGCAAGATGTTTGTGGACCGACCATGGAACTGTTTGGGTATAAGTTTGTTGACAGTGAACAGACACTGTTTAATAAGTCTATTAGCTTGCTTGaagaaaaacaatttaatttatgatagctcacatttttaatttgtttgttttgttatttggcATCTTGTTTGAAGTACTAAAACCAAGCCTGACTACAAGCCTTATTACAAGCAGATAAGTAGCACACTGGAGCACAGATGTTACTGCAGTGCCTTCAGCTCTCATTTTGTGGTGTAGCTTTAATCAGACAAAGTGCTTTCAGCTGGGTTTGGCTAATTTAgataatgaattattaattcattatatttgctgctttaatttaaaaagggtttatacTTGTtctactatgtgtgtgtgtgtgtgtgaatgagtttaTGTAGTTCATGGtattagtttttacattttgcgCTTTCTTACTTTAAACTGTGACTGTAGACATTTTTAGCCAATGGCTAGACAGggaagttatttttttaaccaatgtttaagaaaactgtttttgtttttaatattttcgtTTTACTGAACTCTGTGTTATTGCCATGGGCAAGCTGGTATTATTGTGTATAACTACGTTTAATATCAGATGTTATAGTTTTGAAAcagcatatttttttactttgttttacaTCAACATGTATTCCTCTGGGAAAGGAAGCATTTTGTAGAAACATGCAGGACTCTGAAAGtggtcagtgttcagtgaaCACAATGAAGGCATTATTTTCCAAAAGAGCTAAAGAATGAAACAGACCTCTGCAcaggaaaataaatgaactcTAACGTCTGTCATGCTTTGAAAAATGTTTATGTACAATATTATAACAAGAACTGACAACAAGTAGTTCAAAAATTTGGGGGTTATTTAAAAAGGAAACTGAcgtaaaatacattaaaagggACTGTTTCATTTTGCAGCAAAAAATGAAAGGCTGCAGCTGGAATAGGTCATGTACAAATGTCAAAGACTAATAATAAAAGACATTGATGATAAAGGGAGAA

Function

NR:

description
PREDICTED: carbohydrate sulfotransferase 3-like

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0000139 Golgi membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249490.3 True 2799 mRNA 0.44 3 17800741 17809379

Neighbor

gene id symbol gene type direction distance location
LOC103045557 LOC108442258 coding upstream 33950 17761326 ~ 17766791 (+)
LOC103045248 lrit1a,LOC108442250,LOC107585312,LOC107673966,LOC107716298,LOC107707479,LOC107588643 coding upstream 39945 17755968 ~ 17760796 (+)
LOC103043721 ogdhl,LOC108442924,LOC107683740,LOC108263326,LOC107707496 coding upstream 100245 17677154 ~ 17700496 (+)
parg LOC107683745 coding upstream 127880 17633776 ~ 17672861 (+)
LOC103043107 LOC108442891,LOC108263542 coding upstream 168707 17579198 ~ 17632034 (+)
cuedc2 cuedc2 coding downstream 333216 18142595 ~ 18149799 (+)
LOC103023375 LOC108443064,LOC108263659,LOC105910124 coding downstream 392959 18202338 ~ 18212333 (+)
LOC103023691 spock2,LOC108443083,LOC107668819,LOC108262742,LOC107673954 coding downstream 423830 18233209 ~ 18287507 (+)
LOC103025593 LOC108443100,LOC108263458 coding downstream 513211 18322590 ~ 18337821 (+)
rps24 LOC102780737 coding downstream 540361 18349740 ~ 18353030 (+)
G217313 NA non-coding upstream 23655 17776766 ~ 17777086 (+)
G217222 NA non-coding upstream 405492 17395039 ~ 17395249 (+)
G217140 NA non-coding upstream 536310 17264130 ~ 17264431 (+)
G217122 pcgf6 non-coding upstream 740160 17058330 ~ 17060581 (+)
G217109 NA non-coding upstream 790943 17009574 ~ 17009798 (+)
G217359 NA non-coding downstream 290575 18099954 ~ 18161772 (+)
G217362 NA non-coding downstream 307823 18117202 ~ 18124261 (+)
G217368 NA non-coding downstream 342822 18152201 ~ 18154348 (+)
G217369 NA non-coding downstream 345026 18154405 ~ 18158027 (+)
G217361 hif1an non-coding downstream 354003 18163382 ~ 18167900 (+)
LOC111195981 tacc2 other upstream 616490 17149342 ~ 17184251 (+)
borcs7 borcs7 other upstream 793204 17004541 ~ 17007537 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other upstream 3020428 14722400 ~ 14780313 (+)
gsto1 gsto1 other upstream 3453408 14342232 ~ 14347333 (+)
spef1 spef1 other upstream 4050435 13740513 ~ 13750306 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 194874 18004253 ~ 18039352 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other downstream 502514 18311893 ~ 18317228 (+)
LOC103030769 LOC103030769 other downstream 933827 18743206 ~ 18744327 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other downstream 1027965 18837344 ~ 18847028 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other downstream 1351274 19160653 ~ 19216989 (+)

Expression


Co-expression Network