LOC103023375 (LOC108443064,LOC108263659,LOC105910124)


Basic Information

Item Value
gene id LOC103023375
gene name LOC108443064,LOC108263659,LOC105910124
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 18202338 ~ 18212333 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249502.3
GGTATTCTCCTGTGTGGAGACTCTGTGGTTCCGCTGTCGCAATGGAATCAAACAAGGACGAAGCGGAACGATGCATCGAGATTTCTCTCTCAGCGCTGAGAGACAGTCAGCCCGACAAAGCCCGGAGGTTCCTGGAGAAAGCGCAGAGGCTGTTTCCCACAGAGAAAGCGAAACGATTATTAGAGTCTATATCCCAAAATGGAGATGCACACGGCAGTGCTAATGACTGTGGAGACACTGACAGCGCTGGAGTACGACACAGAACCAGCAGTGCTGGAGATCACACCTCAGGAGCAGACAGTGCCACAGATGGAGCCAAgtcatacacaccagatcagcTGGATGCAGTCAAAAgGATAAAAAAGTGCAAGGACTATTATGAAATCCTTGGAGTCGGGAAAGATGCCTCAGAAGATGATCTGAAAAAAGCATACCGAAAGCTGGCATTGAAATTTCATCCAGATAAAAACCATGCTCCTGGTGCTACAGAGGCATTTAAAGCCATAGGAAATGCATATGCTGTTCTTAGTAACACTGAGAAGCGGAAGCAGTACGACCTTTATGGTGAAGAGAAAGTCCACCCATCACGTCATGGCCATTCTCATCGTCACTTTGAAGCAGACATTTCTCCCGAGGATCTCTTCAACATGTTTTTTGGTGGTGGATTTCCATCTAGTAATGTCCATGTATACAGTAATGGTCGGATGAGATTTGGCCATAACCACAGACAAGAACGACGAGAACAACAGAGAGATGGAAGTCTTGCTTTGTTTGTTCAGCTGATGcccatcctcatcctcatcataGTTTCTGCGCTCAGCCAAATGATGGTTTCCAGTCCTCCCTACAGTCTTAGCCTCAGGCCATCTTCAGGACACACAAACAGACGACAGACTACCACTCTGAAGGTGCCTTACTATGTGGGAGACCAATTTTCAGAGGAATATAGTGGAATCAATCTAAAGCATATTGAACAGAGTGTGGAGGAGGACTACATTTCAAATCTTAGAAACAATTGTtggaaagaaaaacaacagaAGGAAGGGTTGTTGTATCGAGCACGTTATTTTGGAGATTCAGAGCTGTACCAAAGGGCGCAGAAAATGGGCACACCAAGTTGTTCAAAGCTTTCAGACATTCAAGTCCTGCTGCATGGACACTGAGAGACAAGAGAGTCCAGTGGTGAATGTTAATTTTGAAGGTGACCAAGTACAGAAATATTCTGCTCTCACCAAGCTTTCACTGAAAGCAAAGTGGGAATTTGCACCCGGAAAAGCAAAAATATCTATATCCGTGCGCTTTTGGGGCACATATTTGTCTTTCCTCTCCCCTGTGATGTTTTTAAATTTGCACATCACAGATATTGCTGAAATTTCAGAAGTGGGTCTAAAACTATAATTTTCTCATTTGAAAATGATTACGGATCTTGAGGTTAAAACATACTTAATAGCTGTATTCTGAATGGTAAGCTATGCTGCTAGCTTAATGCTTTTCTTTTCGGTAAGTCTGTGCACCCCAATTCCATTCTAAGCAATTTTAGAACCCTATATTTGGGTTGTCTGAGCCACTCaagatttttagtatttttttggaCCTGTGTTTTGACAGCAAGAACTAAATTTAAGTTGTTGCCATTCCTTGTTTAATTGTTCACTGTAGATTTGcctgttggattttttttatcaagcatTTGAAATTAATGAAAAGAGATTTTgatctgtatttattaaaatggaATCATCCTA

Function

NR:

description
PREDICTED: dnaJ homolog subfamily B member 12-like

GO: NA

KEGG:

id description
K09518 DNAJB12; DnaJ homolog subfamily B member 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249502.3 True 1745 mRNA 0.42 9 18202338 18212333

Neighbor

gene id symbol gene type direction distance location
cuedc2 cuedc2 coding upstream 52539 18142595 ~ 18149799 (+)
LOC103046358 LOC108442959,LOC108262760 coding upstream 392959 17800741 ~ 17809379 (+)
LOC103045557 LOC108442258 coding upstream 435547 17761326 ~ 17766791 (+)
LOC103045248 lrit1a,LOC108442250,LOC107585312,LOC107673966,LOC107716298,LOC107707479,LOC107588643 coding upstream 441542 17755968 ~ 17760796 (+)
LOC103043721 ogdhl,LOC108442924,LOC107683740,LOC108263326,LOC107707496 coding upstream 501842 17677154 ~ 17700496 (+)
LOC103023691 spock2,LOC108443083,LOC107668819,LOC108262742,LOC107673954 coding downstream 20876 18233209 ~ 18287507 (+)
LOC103025593 LOC108443100,LOC108263458 coding downstream 110257 18322590 ~ 18337821 (+)
rps24 LOC102780737 coding downstream 137407 18349740 ~ 18353030 (+)
LOC103028339 LOC108443181 coding downstream 164315 18376648 ~ 18634603 (+)
LOC103029282 ppifa,LOC108442288,LOC107588732,LOC107668776,LOC108263515,LOC107564349,LOC107673899,LOC105909881 coding downstream 423735 18636068 ~ 18640875 (+)
G217361 hif1an non-coding upstream 34438 18163382 ~ 18167900 (+)
G217359 NA non-coding upstream 40566 18099954 ~ 18161772 (+)
G217369 NA non-coding upstream 44311 18154405 ~ 18158027 (+)
G217368 NA non-coding upstream 47990 18152201 ~ 18154348 (+)
G217362 NA non-coding upstream 78077 18117202 ~ 18124261 (+)
G217420 NA non-coding downstream 211497 18423830 ~ 18424763 (+)
G217431 zcchc24,LOC107564348,LOC106608383 non-coding downstream 469629 18681962 ~ 18689693 (+)
G217433 NA non-coding downstream 476039 18688372 ~ 18695794 (+)
G217435 NA non-coding downstream 485660 18697993 ~ 18699151 (+)
G217438 NA non-coding downstream 501718 18714051 ~ 18714310 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other upstream 162986 18004253 ~ 18039352 (+)
LOC111195981 tacc2 other upstream 1018087 17149342 ~ 17184251 (+)
borcs7 borcs7 other upstream 1194801 17004541 ~ 17007537 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other upstream 3422025 14722400 ~ 14780313 (+)
gsto1 gsto1 other upstream 3855005 14342232 ~ 14347333 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other downstream 99560 18311893 ~ 18317228 (+)
LOC103030769 LOC103030769 other downstream 530873 18743206 ~ 18744327 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other downstream 625011 18837344 ~ 18847028 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other downstream 948320 19160653 ~ 19216989 (+)
rrp12 rrp12,LOC106529656 other downstream 1111573 19323906 ~ 19345404 (+)

Expression


Co-expression Network