CI01000009_01402330_01407372 (ZIC2A, ZIC2)


Basic Information

Item Value
gene id CI01000009_01402330_01407372
gene name ZIC2A, ZIC2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1401061 ~ 1407755 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_01402330_01407372.mRNA
TTATAAAGGCAATAAATTTGCATATTGTTATTCAGAGTAGCTTTGGTACCAGCTACGAATAAGTGCGTTTTTTAAACCAAATAAATTAATCCAAGTAGGCCTATTAAAGATGAGGTTGATGGCAATGACGACAATGTACCATTGCCGACTCCGTCTACTGCCCAGTTTTCCATATTATTGATTTTTTTTAGTAGGCCTACTTCATGTTTCAATAAGCTAATGTAATAGGCTATTTATTTATGAATACACGTTTGTTTGTTTTTGATGTGTCAATCAACACTCATGAAGACATGATCACGTCCTGAAGAACACATACAAACTGAATGCGTACTAATGTTTCATAACGACAAAATGTGTTGTCATACTCACGTGCAGATTGAATCAAGGCACCTCGAGCGAGGTTTGTGAGTTTGTATTTCATTCACGCTAACCCCTAAACTGTCTGTTTGTTGGATTACAGTATGCGAAAGTAAGTAATTGGATTTTGCTATAACCTAAATATCCTAGACATTTTAGTATACAAACTATACTGATGTCTCACGAGGTTTTACACGTCCACCAAAGAATTATGGGTTACACTTACTCTTATGAGCCCGCGTGGCAATTGATTTAGATTTATTAAACGATATGATTAAACGCGAGTATTTTTGCTTTCCCTCTACCTATTCCCCGAAAAGGCTCTCCGAAAAGTAGGCGGTAATTATCGGTGGAAGATGGCGATCAGCGATTAGTTGCCAAAGGAGTGCGTTGGATTGGAGGGGCGACTAGGATTGATGAGGAGCGTCGGCCAATGAGAGCGCGTCAAATGAATGACCGGGCTCCAGTTAAAGGGGGCGTAAGAGGAGGTAGTGCCAGTCCACTGAGAAAGAGGGACCCTCCGAGATAAACATAGACAAGCGAAAGAAATAAACATTCCAATTCGAGATGCTTCAAGAACAAGGAAGACTTAGTAAGATAATGACTCGTATTTTCGTGTATTCTGAAAATAACGACATCGACTCAGTTTGAAAGGAAAAGCGCAAAGGAATCTTCTCATTTCGTTGCATTGGGGATTTTGAGTAACAAGTTATCCACAAGAAAAATATAGCCTAACTTAATACGCAAAGCTTTTTTTCCTGTGAGCGGATCGAACTTCATCGCCTCATGTCGTGTTATCAAATCTGGAAGTTAATATTCCCGTAGCGCATTCGATTTTATTTTTTTTATATGTTTTGTTGAAGCGCCGTGCATAGACTGCTTGAAAGAGAATTGGTTTTGCTCAACGAAAGCATGTTACTGGACGCTGGGCATCAGTTCCCTGGTTTGGGAGTGGGCACCTTTGCCAGGCATCATCACTCCTCCAGTGAGATGCAGGACAGAGACTTGAGTTTAGCGCAGAACAGCTTCGTCGACTCGGCGCACATGGGCGCCTTCAAACTGAACCACGATCTCTCGCCCGGACAGAGTTCTGCATTCACGAGCCAAGCGCCCGGTTACCCCGCAGCGGCTCTGGGCGCGCACGCGGCTCATGTCACATCATACGCGAGCTCGCCGTTTAACTCCACGCGGGACTTTCTCTTTCGCAGCCGTGGATTCGGGGAATCGTCACCGGCGGGAGGCCAGCACGCACTCTTCGGCCCCACTGCCGGCTCGCTCCATCACTCTCACACAGACAGCCAAGGCCACATTCTGTTCCCTGGCATCCACGAGCAGCATGGATCTCACGGTTCCCCAAACGTGCTCAACGGGCAGATGCGACTCGGACTACCGGGGGAGGTTTTCGGGCGATCAGACCAGTACCACCAGGTCTCCAGCCCGAGGACCGACCCTTACTCTGCCGCCCAGCTGCACAACCAGTACGGCTCCATGAATATGAACATGGGGATGAATATGGCAGCGCATCACCATCACCCCGGTGCCTTCTTTCGCTACATGAGGCAGCAGTGCATTAAGCAAGAGCTCATCTGTAAATGGATCGATCCAGAGCAGCTCAGTAATCCTAAGAAGAGTTGCAATAAAACTTTCAGCACCATGCACGAACTGGTCACCCACGTCTCGGTCGAGCACGTTGGAGGACCCGAACAGAGCAACCACGTCTGCTTTTGGGAAGAGTGTCCCCGGGAAAGCAAGCCCTTTAAAGCCAAATATAAACTGGTCAATCACATCCGCGTGCATACGGGAGAAAAACCTTTCCCCTGCCCGTTCCCTGGATGTGGAAAAGTCTTCGCAAGATCAGAAAACCTGAAGATTCACAAGAGAACACACACAGGGGAGAAACCATTTCAGTGTGAGTTTGAGGGATGTGATCGGCGCTTCGCGAACAGCAGTGACCGAAAGAAGCACATGCACGTTCACACGTCAGACAAACCGTATCTGTGCAAAATGTGCGACAAGTCCTACACTCACCCCAGCTCTCTTCGAAAGCATATGAAGGTTCACGAGTCATCCCCATCTGCATCTGACTCGTCGCCAGCGGCAAGTTCTGGTTATGAGTCCTCAACACCCCCTGGTCTGGTGTCCCCCTCCACTGAGACCCAAAGCAACAACAATCTGTCGCCTTCCTCAGCGGTCCACAGTTCCAACAACCACAGCAGTTTATCGTCCAATTTCAGTGAATGGAAATACAACTTGAAGCCACTCCTAAGAAGACAGTCGGTTTGTTCAGAAATCACCAGAACACTGATTATTAATGCGCAGCTGCCTATGGGCTGCTGGGTATATGTTTTCTTGCGTTTTCGGCTTTTGATTGAATCGCCCACTCCTTGGCTTGTGTTAGTATCCGCTGGATATATTCCCTGTTAAGGCATACTTTGACATAGTTGTGTGTTGGTGTGTTGACCTGTTTAGGGGAGGATGGTGTGACCTGTAGGGAGAGTGAAAGGTCAGCGTCCTGCGGTGCTTGGATGGCGTTTCCTTCTCAGCGCACGCTGCTCTGATATTGATCCGTGTAGAAAAACCTGCCCACAAATAAATAAATAAATAAATAATGTTCAAGACTGTACATTCCACTTTAAAACAGACTTTTTTTAAACACGTAATGTTTGTGAATTTCTTCTGAAAATTAAAAATATATATATATATTTTTTTTTTTGGTTAGTGACTTCAAATCATTATTTTATAGGGTATTTTAACACTGAAATGCAACAAACGAAACAAACACAAAGCTTCTACTACTGCATGCAAAA

Function

symbol description
zic2a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including animal organ development; neural tube formation; and regulation of signal transduction. Predicted to be active in nucleus. Is expressed in several structures, including anterior neural keel; central nervous system; ectoderm; neural plate; and presumptive structure. Human ortholog(s) of this gene implicated in holoprosencephaly and holoprosencephaly 5. Orthologous to human ZIC2 (Zic family member 2).
zic2 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and chromatin DNA binding activity. Predicted to be involved in nervous system development; regulation of transcription, DNA-templated; and visual perception. Predicted to act upstream of or within several processes, including cilium organization; neural tube closure; and positive regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry. Located in nuclear body. Implicated in holoprosencephaly and holoprosencephaly 5.

GO:

id name namespace
GO:0021536 diencephalon development biological_process

KEGG:

id description
K06235 ZIC2; zinc finger protein ZIC 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_01402330_01407372.mRNA True 3164 mRNA 0.46 4 1401061 1407755

Neighbor

gene id symbol gene type direction distance location
CI01000009_01351236_01380055 CLYBL coding upstream 20776 1351236 ~ 1380285 (+)
CI01000009_01219880_01224537 NA coding upstream 176192 1219637 ~ 1224869 (+)
CI01000009_01183737_01206031 NA coding upstream 194204 1182091 ~ 1206857 (+)
CI01000009_01110684_01111118 NA coding upstream 289460 1110684 ~ 1111601 (+)
CI01000009_01034561_01035452 KLF12 coding upstream 365333 1034561 ~ 1035728 (+)
CI01000009_01431700_01434463 NA coding downstream 23095 1429873 ~ 1435328 (+)
CI01000009_01454610_01484907 NA coding downstream 46469 1453708 ~ 1485828 (+)
CI01000009_01570544_01595199 NA coding downstream 162324 1570079 ~ 1595466 (+)
CI01000009_01692563_01725364 ITGBL1 coding downstream 284808 1692563 ~ 1725364 (+)
CI01000009_01733394_01738937 ITGBL1 coding downstream 323539 1731294 ~ 1739468 (+)
G51059 NA non-coding upstream 48638 1352013 ~ 1352423 (+)
G51043 NA non-coding upstream 96993 1303599 ~ 1304068 (+)
G51041 NA non-coding upstream 110285 1290543 ~ 1290776 (+)
G51039 NA non-coding upstream 112389 1288200 ~ 1288672 (+)
G51036 NA non-coding upstream 115641 1284860 ~ 1285420 (+)
G50937 NA non-coding downstream 38840 1446595 ~ 1480466 (+)
G51062 NA non-coding downstream 74963 1482718 ~ 1482952 (+)
G51110 NA non-coding downstream 249304 1657059 ~ 1657370 (+)
G51125 NA non-coding downstream 332857 1740612 ~ 1863136 (+)
G50920 NA other upstream 630828 769841 ~ 770233 (+)
CI01000009_00094836_00095813 NA other upstream 1305274 94371 ~ 97230 (+)
G51122 NA other downstream 272391 1680146 ~ 1681966 (+)
CI01000009_01897343_01919208 PIKFYVE other downstream 486480 1897343 ~ 1919516 (+)
G51274 NA other downstream 847344 2255099 ~ 2350486 (+)
G51529 NA other downstream 1654278 3062033 ~ 3062587 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location