LOC103025593 (LOC108443100,LOC108263458)


Basic Information

Item Value
gene id LOC103025593
gene name LOC108443100,LOC108263458
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 18322590 ~ 18337821 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249510.3
aaataatattttaaaaatctaaatattaaaacctttttgtctgtgtgtttcaTGTTTAAGGCCGTGACCAGTTACTTTAGATTTGTATGACCCAAGATAATATATGTATTCTATTCTGGACTTCTCTCTCTACTTGTTTTGGCACTGAGTGATGTTtgagtgatggtgtgtgtgtgagagagtttgTGTTCTGGGTCTGTTCCATGAGGGAGGCTGTCCTGTGAATGTCTGGAGCCGCCCACCAAGCCGTCTGGCTGCCAGATGTACAGTATTTCTCCCGTGCCCCTCCAGAGCTGCTATTTCAGCTCTGCCACTGTGAGAAACGAACCAGTTAGCCAAATGACTTGAGAGCAGTAGTTTAGCCCTTTGTCTTTGCTGTTCGGAAGCTAGAAATGGCTATGGTTAGAAGAAACATCTAACAGCAAACAACTACGAGAAATATGTTCTGATTGGATCAAATCCAAGCTTTCACAAAACTTCTACAACGATGTCTGAAACAAAGAAGCAAAGAGCAAAGGATATGAGCACAACCAACACAGCTGTTCGACCCTCGGCTCGGATTATGGGTACCACTGCCAGTGCCGGGTCCCAGCCTGCGTTGGTGGCACCTACACACCAAGCTGGTCCGGGTAACAGCATGGCTGAAGACAGAAGCTCTCTCAGCAGCTCTCTACAGGCCCTAAACATTCCTAACAGCAAAGCCAAGTCCATCATCACCAACAAGGTGGCCCCTGTGGTCATCACGTATAACTGCAGAGAGGAGTTTCAGATTCATGACAGTGTCCTGTCAGCCAACTACACAGTGGGACGAATATCTGATACAATGCCTGAGCATTACCTAGTGCTGGGCGAGTTTTTTATGGTTCAGGATGTGAACAGTAGAGCAGATGTCTTAAACACCACAGGAAGCTACGGGGCCCCCAACTTCCGCAAGGCCAAGGGAAACTACCCTCTGTATGGCATGGGCCAGCCTAGCTTGAATGGCTTTAAGCAGGTCCTCCAGAGGCTGGAGACGGAGGCATATGAGGAGGTGATATTCTTGTGTGTGCGAGAAGAGCCGATTGTCTTTCTTCGTCTGGATAAAGACTTTGTTCCGTACACTCCCAGAAGGAAAGAGAACCTCCATGAGAACCTTCTCCACCTAAAAGGAGGGGTCAGAGCAGAGCAGCTGGAGCTTTCCATCAGGAAAGAGTTGTGTGACTTTGCTAAACTCACCGAGAACATCTTCTATGTTTATAATAACATTGAACACTTTAAAGATGAGCCACAGCATGTCAGGATTGTTTCTGAGGAGGACATACATGTGACTGAGGAGGTCTACAAACGGCCACTTTTCAGCTTACCTTCTCACAggTATTACAGACTTCCACTTCCTATAGAGGGGGCACCACTGGAAGAGGATTTCGATGCCTTTGTTAACATCCTCAGGGAAAGCCCTGGTCTGTCAGTGTTGCGAGATGACTCCAGGCCTTTGCCTGCACTGCTCTTCAGCTGCCAGGAGGGGGTGGGTCGGACCAACCTTGGCCTCATCCTGGGTGCATTAATCTTGCAACACCTGCAGAGGGCAGCACGTACATCCAAagaaGAAGACACAGAAGAGGACAGACATCAGCCAGAATTCCAAGTAATTCAGAATCTGATCAGCCATCTTCCCAAAGGTCAACAAGTCCTTGATGAGGTTGACAGGGCTATAGAAATGTGTTCGGAAATGCACAACATCAAAGATGCTATATTTGAAAATAAGCGAAAAATGGATGGCATTTCGGAGGACTATCAGATTCAAGGAAGCAGCACAAAGGGTTATTTCCTCCAACGAACTTTGCAGAGTATTGAGCGTTATTTCTATCTGATAGTGTTTAACGCTTACCTTCATGATCAGTTTCCACAGCTGTTTGCCCAGAGTTTCAGTCGGTGGATGTGTGCAAATGCATGGATCTACAGGCTACTGGGTAGTATGGACTGCTCTGAGCTCTCAGCTCCAGCCAGCCTGGTCACTGATGGAAAAAGGATACTGGTTTCTAGTGAATATTTAGCCCCGGACCTGCTTGGTACAGCCAAGGAAATGAGAGTGGCCAACTTCAGGCGAGTTCTGAAGACAGCCGTGTATGGCATGGCACAGCCCAGCTCAGAGGCTGTGTCCATGGTACTGTCTTACCTTACGGATGAGAAACGGAAGCACTCCAGCATACTGTGGATTAATCTGCAAGAGGAAATGGTCGTGGAAGGAAATGGGCAGATGTTCACTCCTCGAGAGCCAGTCTGTGTGGAGCAGCCAATCTCAGTGTGTGTGCATAACCAGGAATCACTTGAGAAGCTGGAGCTGGCAGTGAAGGAAGACATTCTGAAGTGTGAGAAGTGGCTTGAAGtcaccacagagcaggagaaGCAGATGAGGATGCTGAAAAGCTGTCGCACTCTTCAGGAGCTCTTTGAACAGCAGCAGACCATCCACCCAGGTCTCACCTACCGTCGTGTTCCCCTCCATGACTGCTGTGCTCCAAATGAAGAGGTATTTGACCAGCTTTTGGAAGCTATGAAGTCTACTCTGGCTGAGGACGCTGGCTCTGCTTTCATCTTCAACTGCAGTGATGGGAAAGATCGAACCACTACTGCAATGGTCATCAGCACACTGACATTGTGGCACTTCAATGGCTTCCCTGAATGTGGAGACGAGGAAATTGTAAGTGTCCCAGATGCAAAGTACACAAAGGGAGAGTTTGAGGTGGTGATGCAGGTGGTCAGGTTGCTGCCTAATGGTTACCAAATGAAGCAAGAGGTTGACATGGCCCTTGACATTGTCAGTGAGACAATGACTCCCATGCATTACCACTTACGGGAGATCATTATATGCTCATATAAACAGATCAAATCAGCGAAATCAGACACTGAATCTCAGCAGTTACGGCTGAAGAGTCTACAGTACCTGGAGCGCTACATTTACCTCATCCTCTTCAATAGCTACCTCCACCTGGAGAAGAAAGACTCCTGGAGACGACCCTTCAGCTTGTGGATGCACCAGGTGGCAGCAAAAGCTGGTATCTATGCCATCCTCAATCAGCTGGGTTTCCCTGAATTTGAAGCTCATAAGGACTCTCCACTGGCCAGTCTACGCCATCGCTGGCAAAAGCATGGTTCTCATTCGCTGCCTATCCGTGGAGACTTTATTTAATGGAATTGTAGCTTTTAACATACAACTATAGTGTGACACAGAAAGAGAACTGGGGCTGACTCACATTGTTGTGCTGTTTATATTATTCACAACTCATCAAactgaatttttaaattaagttcactcaactgctttgctttctttctcttttcttttgccAAACCAGTACAGGCTAAGATCTGTATCCTCTTATATATGCACTACACTGACTCTCACACATTCTTCCTGTCAGTTTCTTATTTCTCAGTTCCTGCATTAGATTTTGTTTATTGGTCACCTACTTCTCACAGACAACAGTACAACCATGTACAGCATTTCCCCACAACTGAGAAAGAACATCTGTATAGTATCTCACTAACTGCTAATGGAATTCAATGTAAATATagtggagctttttaaaatcCCTTTGAAAGATTATGGGGTTCTTTCCCAGACAGATACTAACCTATttatagactatattttcctttcaatacAAAATCTTAATTGGTAATGCAGCGTAGTCCAAGACtgggcttaatccctgtctgggaaacagCCCTTATATGTTTGCCCCTCTGAAGGTAACAGTAACACTAAGAAGTTATGCTTAGTTTTAATGATAATATTGAAAGGTGGATTTCTTacagttaatattattatattattgtgtgcattttttttcctgtagtTTTCATTGTGTGatgttatttcattatttttgcaTAAAATAAGAACAACTGTACAGTTTACATCTAGCCAATGACACATATAAATACCAGATCtgcaccatttttttcaatcaataaaaatgctaataaaattaATGTGTTACAAATGGTACAGCAAAaccataaaacatatatatgaaTACAATTATACTATTTGGCTGTGGCAAGAACTTTATTGACTTCACATTTGTGATATAGTGTACAGTAAAGCCAATACTTCAA

Function

NR:

description
PREDICTED: paladin-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249510.3 True 4101 mRNA 0.44 21 18322590 18337821

Neighbor

gene id symbol gene type direction distance location
LOC103023691 spock2,LOC108443083,LOC107668819,LOC108262742,LOC107673954 coding upstream 35083 18233209 ~ 18287507 (+)
LOC103023375 LOC108443064,LOC108263659,LOC105910124 coding upstream 110257 18202338 ~ 18212333 (+)
cuedc2 cuedc2 coding upstream 172791 18142595 ~ 18149799 (+)
LOC103046358 LOC108442959,LOC108262760 coding upstream 513211 17800741 ~ 17809379 (+)
LOC103045557 LOC108442258 coding upstream 555799 17761326 ~ 17766791 (+)
rps24 LOC102780737 coding downstream 11919 18349740 ~ 18353030 (+)
LOC103028339 LOC108443181 coding downstream 38827 18376648 ~ 18634603 (+)
LOC103029282 ppifa,LOC108442288,LOC107588732,LOC107668776,LOC108263515,LOC107564349,LOC107673899,LOC105909881 coding downstream 298247 18636068 ~ 18640875 (+)
c25h10orf10 LOC103031081 coding downstream 393776 18731597 ~ 18732521 (+)
ercc6 ercc6 coding downstream 572125 18909946 ~ 18938453 (+)
G217364 NA non-coding upstream 102021 18187590 ~ 18220569 (+)
G217361 hif1an non-coding upstream 154690 18163382 ~ 18167900 (+)
G217369 NA non-coding upstream 164563 18154405 ~ 18158027 (+)
G217368 NA non-coding upstream 168242 18152201 ~ 18154348 (+)
G217362 NA non-coding upstream 198329 18117202 ~ 18124261 (+)
G217420 NA non-coding downstream 86009 18423830 ~ 18424763 (+)
G217431 zcchc24,LOC107564348,LOC106608383 non-coding downstream 344141 18681962 ~ 18689693 (+)
G217433 NA non-coding downstream 350551 18688372 ~ 18695794 (+)
G217435 NA non-coding downstream 360172 18697993 ~ 18699151 (+)
G217438 NA non-coding downstream 376230 18714051 ~ 18714310 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other upstream 5362 18311893 ~ 18317228 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other upstream 283238 18004253 ~ 18039352 (+)
LOC111195981 tacc2 other upstream 1138339 17149342 ~ 17184251 (+)
borcs7 borcs7 other upstream 1315053 17004541 ~ 17007537 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other upstream 3542277 14722400 ~ 14780313 (+)
LOC103030769 LOC103030769 other downstream 405385 18743206 ~ 18744327 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other downstream 499523 18837344 ~ 18847028 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other downstream 822832 19160653 ~ 19216989 (+)
rrp12 rrp12,LOC106529656 other downstream 986085 19323906 ~ 19345404 (+)
G217874 nkx2-3 other downstream 1682593 20020414 ~ 20074343 (+)

Expression


Co-expression Network