rps24 (LOC102780737)


Basic Information

Item Value
gene id rps24
gene name LOC102780737
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 18349740 ~ 18353030 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249517.3
acaaaataagtctgtatgtttttgtatttacagtCAGGCAGTGCGGTGGCCTACCAACCATCAGGCATATCGCTGGGCGCCTTCAGGCCCTCCTTCCTTTTCCTCGTCCCTGAGCGAGCCGACGCCAAGATGAACGACACCGTCACAGTTAGGACTCGGAAGTTCATGACAAACCGCTTGCTTAACAGGAAGCAAATGGTTCTTGATGTCCTGCATCCTGGCAAAGCAACTGTCCCCAAGATTGAAATCCGGGAAAAGCTTGCCAAAATGTACAAGACCACCCCAGATGTAGTGTTTGTTTTCGGCTTCAAGACTCAGTTTGGAGGTGGCAAAACAACCGGTTTCGCCATGGTCTACGATTCACTGGACTCTGCCAAGAAGAATGAGCCCAAATACAGACTGGCCAGACATGGTCTCTATGAGAAGAAGAAGACCTCAAGAAAACAGCGCaaggaaagaaagaacaggATGAAGAAAGTACGAGGCATCAAGAAAGCCTCCGTCGGTGCTGCTGGCAAAAAGAAATGAGGTGTCAGGAAAAGTGAGACCTTCAGGGAAGATCATCCTGAAAATGTTCTTGTATATTGTCaacaaataaattgtaaaaaaaaaaaaaaa
>XM_007249518.3
acaaaataagtctgtatgtttttgtatttacagtCAGGCAGTGCGGTGGCCTACCAACCATCAGGCATATCGCTGGGCGCCTTCAGGCCCTCCTTCCTTTTCCTCGTCCCTGAGCGAGCCGACGCCAAGATGAACGACACCGTCACAGTTAGGACTCGGAAGTTCATGACAAACCGCTTGCTTAACAGGAAGCAAATGGTTCTTGATGTCCTGCATCCTGGCAAAGCAACTGTCCCCAAGATTGAAATCCGGGAAAAGCTTGCCAAAATGTACAAGACCACCCCAGATGTAGTGTTTGTTTTCGGCTTCAAGACTCAGTTTGGAGGTGGCAAAACAACCGGTTTCGCCATGGTCTACGATTCACTGGACTCTGCCAAGAAGAATGAGCCCAAATACAGACTGGCCAGACATGGTCTCTATGAGAAGAAGAAGACCTCAAGAAAACAGCGCaaggaaagaaagaacaggATGAAGAAAGTACGAGGCATCAAGAAAGCCTCCGTCGGTGCTGCTGGCAAAAAGTGAGACCTTCAGGGAAGATCATCCTGAAAATGTTCTTGTATATTGTCaacaaataaattgtaa
>XM_022684756.1
acaaaataagtctgtatgtttttgtatttacagtCAGGCAGTGCGGTGGCCTACCAACCATCAGGCATATCGCTGGGCGCCTTCAGGCCCTCCTTCCTTTTCCTCGTCCCTGAGCGAGCCGACGCCAAGATGAACGACACCGTCACAGTTAGGACTCGGAAGTTCATGACAAACCGCTTGCTTAACAGGAAGCAAATGGTTCTTGATGTCCTGCATCCTGGCAAAGCAACTGTCCCCAAGATTGAAATCCGGGAAAAGCTTGCCAAAATGTACAAGACCACCCCAGATGTAGTGTTTGTTTTCGGCTTCAAGACTCAGTTTGGAGGTGGCAAAACAACCGGTTTCGCCATGGTCTACGATTCACTGGACTCTGCCAAGAAGAATGAGCCCAAATACAGACTGGCCAGACATGGTCTCTATGAGAAGAAGAAGACCTCAAGAAAACAGCGCaaggaaagaaagaacaggATGAAGAAAGTACGAGGCATCAAGAAAGCCTCCGTCGGTGCTGCTGGCAAAAAGAAGAAATGAGGTGTCAGGAAAAGTGAGACCTTCAGGGAAGATCATCCTGAAAATGTTCTTGTATATTGTCaacaaataaattgtaaaaaaaaaaaaaaa

Function

NR:

description
40S ribosomal protein S24 isoform X1

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02974 RP-S24e, RPS24; small subunit ribosomal protein S24e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249517.3 False 618 mRNA 0.46 6 18349740 18353030
XM_007249518.3 False 585 mRNA 0.47 5 18349740 18353017
XM_022684756.1 True 621 mRNA 0.46 7 18349740 18353030

Neighbor

gene id symbol gene type direction distance location
LOC103025593 LOC108443100,LOC108263458 coding upstream 11919 18322590 ~ 18337821 (+)
LOC103023691 spock2,LOC108443083,LOC107668819,LOC108262742,LOC107673954 coding upstream 62233 18233209 ~ 18287507 (+)
LOC103023375 LOC108443064,LOC108263659,LOC105910124 coding upstream 137407 18202338 ~ 18212333 (+)
cuedc2 cuedc2 coding upstream 199941 18142595 ~ 18149799 (+)
LOC103046358 LOC108442959,LOC108262760 coding upstream 540361 17800741 ~ 17809379 (+)
LOC103028339 LOC108443181 coding downstream 23618 18376648 ~ 18634603 (+)
LOC103029282 ppifa,LOC108442288,LOC107588732,LOC107668776,LOC108263515,LOC107564349,LOC107673899,LOC105909881 coding downstream 283038 18636068 ~ 18640875 (+)
c25h10orf10 LOC103031081 coding downstream 378567 18731597 ~ 18732521 (+)
ercc6 ercc6 coding downstream 556916 18909946 ~ 18938453 (+)
drgx drgx,LOC107673892,LOC107548637,LOC107588616,LOC107708289 coding downstream 589218 18942248 ~ 18948011 (+)
G217364 NA non-coding upstream 129171 18187590 ~ 18220569 (+)
G217361 hif1an non-coding upstream 181840 18163382 ~ 18167900 (+)
G217369 NA non-coding upstream 191713 18154405 ~ 18158027 (+)
G217368 NA non-coding upstream 195392 18152201 ~ 18154348 (+)
G217362 NA non-coding upstream 225479 18117202 ~ 18124261 (+)
G217420 NA non-coding downstream 70800 18423830 ~ 18424763 (+)
G217431 zcchc24,LOC107564348,LOC106608383 non-coding downstream 328932 18681962 ~ 18689693 (+)
G217433 NA non-coding downstream 335342 18688372 ~ 18695794 (+)
G217435 NA non-coding downstream 344963 18697993 ~ 18699151 (+)
G217438 NA non-coding downstream 361021 18714051 ~ 18714310 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other upstream 32512 18311893 ~ 18317228 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other upstream 310388 18004253 ~ 18039352 (+)
LOC111195981 tacc2 other upstream 1165489 17149342 ~ 17184251 (+)
borcs7 borcs7 other upstream 1342203 17004541 ~ 17007537 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other upstream 3569427 14722400 ~ 14780313 (+)
LOC103030769 LOC103030769 other downstream 390176 18743206 ~ 18744327 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other downstream 484314 18837344 ~ 18847028 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other downstream 807623 19160653 ~ 19216989 (+)
rrp12 rrp12,LOC106529656 other downstream 970876 19323906 ~ 19345404 (+)
G217874 nkx2-3 other downstream 1667384 20020414 ~ 20074343 (+)

Expression


Co-expression Network