LOC103029282 (ppifa,LOC108442288,LOC107588732,LOC107668776,LOC108263515,LOC107564349,LOC107673899,LOC105909881)


Basic Information

Item Value
gene id LOC103029282
gene name ppifa,LOC108442288,LOC107588732,LOC107668776,LOC108263515,LOC107564349,LOC107673899,LOC105909881
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 18636068 ~ 18640875 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249524.3
gtgtacgGAGAGCAGCGGGCAGAACTGATTATAATCAGCTGTAAAATCTAATGAGAGACTGGTCATCGGGCTGCTCTCAGATCCTGTCCGCATTACCGTGCTCAACAGGTAAGTGACCATGAAGGCCACTAACTCAGATTTACCAGTGGAGAAACTTGGAGATTTGTTCATTGGAGAAGCTCCAACTTGCAGAAAGTCAgatatgtacaaaaaaatgaatCTCTCATAAAGGTCTATTTGTAAGTTTGTATCTGAAAAtatatttgggaaaaaaatgctTATTCATTTACAGCCAAAGTTAATAATTATTACACTGATACATAAACGTGCTGCATATACGTTATAAACTGTTCACACCATTTAactttaacaatatatttttattcattgctGCAGGAATTAGTTGAACCCTCAGTGTTGTGGTGGGGCTGGAAATTTCCCTTTTTATCCATTTCCTAATGATGGCAATTGTCTGACCACtaatttaagtttaattatttaaaatgattcgtttttaaatttttacagGTGATGCACATGCAACTctaaatttatataatatacataaacaataaatctTAGTAATTTCACCCCTCTGTTCTCACAGCCCATAAAGGAACTGTGTGTAATAAAACCGGCCACGGTGCGGCGCTGTTGTTTTCCTGCACAGTGAGAGAAGAACAGGGTCACATGGCGGCTATGGCCGCTCTCTGTAAACACACTCTCTATTCATCTTGTTCAGATCTGTCTTTACCCTGTCCGCTTTTCCACAGGCTTCATTATTCCGGCCTTTAGTTTAAACCCGTCAGTGCCGCGATGTTACAGGTAAAAAAACGGTTAAAATACTCGTCAATGGGTCTCGCTGCGAGCAGACTTCTCTCAGGACCCCCTAAAAACCCGGTGGTGTTTCTGGACGTCTCAGCTGACGGAGAGTTTATCGGGAGAATCGTTATTGAACTTCATGCAGATGTTGTTCCCAAAACAGCAGAGAACTTCAGAGCTCTGTGTACAGGAGAGCACGGCTTTGGGTATAAAGGCTCGGTTTTCCATAGAATCATTCCTGAGTTCATGTGTCAGGGTGGAGATTTCACAAACCATAATGGCACTGGTGGAAAATCCATTTATGGCAAGAAATTCAGTGATGAGAATTTTAAATTGAAACACACTGGACCAGGTGTGCTGTCGATGGCAAACTCTGGACCGAACACTAATGGATCTCAGTTTTTTATCTGCACGGTAAAAACAGAATGTCTTGATGGTAAACACGTTGTGTTCGGACATGTAACAGAAGGCATGGAGACCGTATCTGTAATGGAGTCTTATGGTTTGCATGATGGAGGAACAGTTAAGAAGATCGTCATCACAGACTGTGGAGAGCTTTAACATTGCCTTACTCTCACCAGTAGTCATCAGCTCTTCTCCTGGAGATCTGAAGATTTCTGAACGCTTCACCTCCAACCCAGATCTATCAGATAATCACTCCGTTATTATGAAGGCAATAAGATCCGCTGGGGTTAAATATGTGTGAAGCTACATTATGTGGGTGTGCAGGAGCAGGgcttattaaaactttataaaagtgtgtttttttatttatttaaatcattaaagGTAAATTATATCAGTTTAATGAATATAGCATGCACATGTGATTGTATAATGATTGAACAAAGATTTGGTTTGATTTAGgatgtctttttatttttaaaaaataaataaatttaggaCCTTTTGGAACTCTGTGGAGCTGTTTCCAAGACAAGGATTAAGACTAGTTATAGACAATTTTGGTTTgtgaattggaaaaaaaaatctccattcagaatgctgtctagtccaagactaggcttaatccatgtCAAGGAAACTGCTCCTTTATGTTTTATGCTTACTATGTTAGCAATGTCATGATAAATCACAAGCCTTTATACATAAGAAGATAAAGAAATTCCTGGAAGTTTTCGGAATAAACTCAAATGTATATGAAA
>XM_022684893.1
AGCAGACTTCTCTCAGGACCCCCTAAAAACCCGGTGGTGTTTCTGGACGTCTCAGCTGACGGAGAGTTTATCGGGAGAATCGTTATTGAAAGAACTTCAGAGCTCTGTGTACAGGAGAGCACGGCTTTGGGTATAAAGGCTCGGTTTTCCATAGAATCATTCCTGAGTTCATGTGTCAGGGTGGAGATTTCACAAACCATAATGGCACTGGTGGAAAATCCATTTATGGCAAGAAATTCAGTGATGAGAATTTTAAATTGAAACACACTGGACCAGGTGTGCTGTCGATGGCAAACTCTGGACCGAACACTAATGGATCTCAGTTTTTTATCTGCACGGTAAAAACAGAATGTCTTGATGGTAAACACGTTGTGTTCGGACATGTAACAGAAGGCATGGAGACCGTATCTGTAATGGAGTCTTATGGTTTGCATGATGGAGGAACAGTTAAGAAGATCGTCATCACAGACTGTGGAGAGCTTTAACATTGCCTTACTCTCACCAGTAGTCATCAGCTCTTCTCCTGGAGATCTGAAGATTTCTGAACGCTTCACCTCCAACCCAGATCTATCAGATAATCACTCCGTTATTATGAAGGCAATAAGATCCGCTGGGGTTAAATATGTGTGAAGCTACATTATGTGGGTGTGCAGGAGCAGGgcttattaaaactttataaaagtgtgtttttttatttatttaaatcattaaagGTAAATTATATCAGTTTAATGAATATAGCATGCACATGTGATTGTATAATGATTGAACAAAGATTTGGTTTGATTTAGgatgtctttttatttttaaaaaataaataaatttaggaCCTTTTGGAACTCTGTGGAGCTGTTTCCAAGACAAGGATTAAGACTAGTTATAGACAATTTTGGTTTgtgaattggaaaaaaaaatctccattcagaatgctgtctagtccaagactaggcttaatccatgtCAAGGAAACTGCTCCTTTATGTTTTATGCTTACTATGTTAGCAATGTCATGATAAATCACAAGCCTTTATACATAAGAAGATAAAGAAATTCCTGGAAGTTTTCGGAATAAACTCAAATGTATATGAAA

Function

symbol description
ppifa Predicted to enable cyclosporin A binding activity and peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein folding and protein peptidyl-prolyl isomerization. Predicted to be active in cytoplasm. Orthologous to human PPIF (peptidylprolyl isomerase F).

NR:

description
PREDICTED: peptidyl-prolyl cis-trans isomerase A-like

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K09565 PPIF; peptidyl-prolyl isomerase F (cyclophilin D)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249524.3 True 1988 mRNA 0.38 6 18636068 18640875
XM_022684893.1 False 1090 mRNA 0.38 5 18636935 18640875

Neighbor

gene id symbol gene type direction distance location
LOC103028339 LOC108443181 coding upstream 1465 18376648 ~ 18634603 (+)
rps24 LOC102780737 coding upstream 283038 18349740 ~ 18353030 (+)
LOC103025593 LOC108443100,LOC108263458 coding upstream 298247 18322590 ~ 18337821 (+)
LOC103023691 spock2,LOC108443083,LOC107668819,LOC108262742,LOC107673954 coding upstream 348561 18233209 ~ 18287507 (+)
LOC103023375 LOC108443064,LOC108263659,LOC105910124 coding upstream 423735 18202338 ~ 18212333 (+)
c25h10orf10 LOC103031081 coding downstream 90722 18731597 ~ 18732521 (+)
ercc6 ercc6 coding downstream 269071 18909946 ~ 18938453 (+)
drgx drgx,LOC107673892,LOC107548637,LOC107588616,LOC107708289 coding downstream 301373 18942248 ~ 18948011 (+)
LOC107197625 vstm4 coding downstream 334184 18975059 ~ 18990050 (+)
LOC103032870 NA coding downstream 376432 19017307 ~ 19019746 (+)
G217420 NA non-coding upstream 211305 18423830 ~ 18424763 (+)
G217364 NA non-coding upstream 415499 18187590 ~ 18220569 (+)
G217361 hif1an non-coding upstream 468168 18163382 ~ 18167900 (+)
G217369 NA non-coding upstream 478041 18154405 ~ 18158027 (+)
G217368 NA non-coding upstream 481720 18152201 ~ 18154348 (+)
G217431 zcchc24,LOC107564348,LOC106608383 non-coding downstream 41087 18681962 ~ 18689693 (+)
G217433 NA non-coding downstream 47497 18688372 ~ 18695794 (+)
G217435 NA non-coding downstream 57118 18697993 ~ 18699151 (+)
G217438 NA non-coding downstream 73176 18714051 ~ 18714310 (+)
G217439 NA non-coding downstream 77430 18718305 ~ 18773411 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other upstream 318840 18311893 ~ 18317228 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other upstream 596716 18004253 ~ 18039352 (+)
LOC111195981 tacc2 other upstream 1451817 17149342 ~ 17184251 (+)
borcs7 borcs7 other upstream 1628531 17004541 ~ 17007537 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other upstream 3855755 14722400 ~ 14780313 (+)
LOC103030769 LOC103030769 other downstream 102331 18743206 ~ 18744327 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other downstream 196469 18837344 ~ 18847028 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other downstream 519778 19160653 ~ 19216989 (+)
rrp12 rrp12,LOC106529656 other downstream 683031 19323906 ~ 19345404 (+)
G217874 nkx2-3 other downstream 1379539 20020414 ~ 20074343 (+)

Expression


Co-expression Network