c25h10orf10 (LOC103031081)


Basic Information

Item Value
gene id c25h10orf10
gene name LOC103031081
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 18731597 ~ 18732521 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249530.3
CAGTGCCTGTGTCTGTAGAGCAGATCAGATCAACCAGCTCACAGACTGAGAGCAAGCATCAGCTACGAGTAGCGAGTTTGAGCACTAAAATCACCTGTCAGGCGACTCAGATATTGATTACAGAATGAAGCCCAGAAGATTACTCCTGTCCATTGCTCCTCTGCCCACCATAACAGAGACACATGAGGATGCTTCTCAGGTGGCATGTCCGGCCACCCCCTTGCAGTCTCTGGAGGAATATGTCAACTCCATTAAAGAGCTAGCCCAGCCAGCCTGTGGTCCAGTGAGGATGGCAAGGACTCTAAGGACTCGTCTGTTCTCCAAGCCTCTGGGAAAACACTCCAGCACCAGCTCGCCTCGCAGCTCCTCCAGGACTCCTCGGGCTCGTTCCAATTCTCTGGGCCTGGACGAGCGAACCCGCCACTTCAGCAGCCAGAAAGACTGGGCCAGCAGGGACCCGGTGGACTGGCTCTTTGGACAGACGCAAGACGAGCTGCACAGGACTGACTGCGCGTCTGCTGCTTTAAGGTTACTCTAATGACCTGCAGCCCCAAAAAGCAGACACACTGCATAGAACTCTGTTTGGAATGTGACCCTGTGGACGGAGGAATGTTAATGCTACCACTAGGCATGCTGTGCCCTggactttataataataataataataataataataataatagtttaatttatttgcttCATTAGGGACTTTGGTCCTATTGTTTCTATGTTTACACTCTGATGAGTTttttctactctttttttaataaaaaagaacaaaatgttgttttgaaaa

Function

NR:

description
protein DEPP

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249530.3 True 796 mRNA 0.48 2 18731597 18732521

Neighbor

gene id symbol gene type direction distance location
LOC103029282 ppifa,LOC108442288,LOC107588732,LOC107668776,LOC108263515,LOC107564349,LOC107673899,LOC105909881 coding upstream 90722 18636068 ~ 18640875 (+)
LOC103028339 LOC108443181 coding upstream 96994 18376648 ~ 18634603 (+)
rps24 LOC102780737 coding upstream 378567 18349740 ~ 18353030 (+)
LOC103025593 LOC108443100,LOC108263458 coding upstream 393776 18322590 ~ 18337821 (+)
LOC103023691 spock2,LOC108443083,LOC107668819,LOC108262742,LOC107673954 coding upstream 444090 18233209 ~ 18287507 (+)
ercc6 ercc6 coding downstream 177425 18909946 ~ 18938453 (+)
drgx drgx,LOC107673892,LOC107548637,LOC107588616,LOC107708289 coding downstream 209727 18942248 ~ 18948011 (+)
LOC107197625 vstm4 coding downstream 242538 18975059 ~ 18990050 (+)
LOC103032870 NA coding downstream 284786 19017307 ~ 19019746 (+)
LOC103033826 LOC108443358 coding downstream 348204 19080725 ~ 19089231 (+)
G217438 NA non-coding upstream 17287 18714051 ~ 18714310 (+)
G217435 NA non-coding upstream 32446 18697993 ~ 18699151 (+)
G217433 NA non-coding upstream 35803 18688372 ~ 18695794 (+)
G217431 zcchc24,LOC107564348,LOC106608383 non-coding upstream 41904 18681962 ~ 18689693 (+)
G217420 NA non-coding upstream 306834 18423830 ~ 18424763 (+)
G217442 NA non-coding downstream 14871 18747392 ~ 18750080 (+)
G217472 NA non-coding downstream 206504 18939025 ~ 18939903 (+)
LOC111195980 NA non-coding downstream 486992 19219513 ~ 19231760 (+)
G217696 NA non-coding downstream 540416 19272937 ~ 19273154 (+)
G217715 zdhhc16,LOC108443446 non-coding downstream 630157 19362678 ~ 19365255 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other upstream 414369 18311893 ~ 18317228 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other upstream 692245 18004253 ~ 18039352 (+)
LOC111195981 tacc2 other upstream 1547346 17149342 ~ 17184251 (+)
borcs7 borcs7 other upstream 1724060 17004541 ~ 17007537 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other upstream 3951284 14722400 ~ 14780313 (+)
LOC103030769 LOC103030769 other downstream 10685 18743206 ~ 18744327 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other downstream 104823 18837344 ~ 18847028 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other downstream 428132 19160653 ~ 19216989 (+)
rrp12 rrp12,LOC106529656 other downstream 591385 19323906 ~ 19345404 (+)
G217874 nkx2-3 other downstream 1287893 20020414 ~ 20074343 (+)

Expression


Co-expression Network