ercc6 (ercc6)


Basic Information

Item Value
gene id ercc6
gene name ercc6
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 18909946 ~ 18938453 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249533.3
TGAGGTTATTGTATAAGGGACGCGCGgcggtgtgagagagagtagtACACTTGTCTTCATGGATTTTACTGTAAAACGAATAAACTGTTGAACAGATTTCGATCGTTTGGAAGCTGTATAAAAATGCCAGTCGACAACAATGAGGACCAAGACTCTCCAGCCCTGTCCAGTCCTGTCAGTGCTCTAACACCAGGAGGCCAAGAGGAGAATAATGGGATCAACAGAGGGACCGCCGGCCTGTCCATCCCCGGCCGAGGCCTTGAAGAGCCAGCAGCAGCCTGTCCTGAAACTGTGGGACCAGAGATCTCCAGAAAATCCCAGCTTCTGCTCCAGATCAATCGTCAGCAGATCCAGGCTGTTGCTCAGAATGCTCAGGCGGCTGAGCTCCAGGGCCTGGGGGTGGACGTCTATGACCAGGATGTTCTGGAGCAGGGGGTCCTACAGCAAGTGGACAGAGCCATCCACGAGGCCAACCAGGCTGCGGCCAAGGCTGAGGCCGAGAAAGAGTACGAGTCTGTACTGGATGATGTCAGgtCATGCACAAATGCTCTAAAACAAATCAACAAAATAATAGAGCAGCTCACTCCTTATGCCACCTCCAGCAAGGACATCAGCCGGAAAATTGAGTCTGTCAAAAGGCAAAAAGAGAACAAAGAGAAGCAGTTAAAAAAGATCAGAGCCAAGCAGAGGAGATTACAAGCCGTTCTTGGGGGAGAGGATATCCTGAAGCTTGAGGCGGAAGTATTGACTGAGGATGATGAAGAGCCAGGCCCTTCCACACTTGGCAGTATGCTCATGCCAGCTCAGGAGACAGAATGGGAAGAGCTCATCCGCACAGGTCACATGACACCATTTGGCACACGGATTCCTCAGAAGGAAGAAAAGAAGGAGCCACGGAAGGTGATGCTCAGCGAAAACTCTGGCTTTGACAAATACCTAGCTGACCAAGCCAGTATGGCAGAGCAGAGGAAGAAAACCCCCCAGAAGAAGAAGGCCAAAAAGACTTCCCTATCAGAGGCTCCTAAGAACGGTGTTTCGACCAAACAAGAGAAGAAGCTGCAGAAGCGCATGCGAAAGCTTCAGAGGACAGCCTTAAAGGCTCACCCTAAAGCCAGACCTAAAGTGGAGAAAGAGTTTCCTCAGACCAAGAAGAAGAGACATCGGGAAGGAGACTCGGACAGTGAGGGCTCAGTGTATGTTCCTAGTGATGAACTTATGGACCCTGACGAACCGGAGCCAGATGATGAGTTCTGGGTTGATGAAAATGAGGAGTATAAACTAAAGCCctataagaaaaagaaagaggccAAGCCCAGGAAGCCCAGGAAAGAAGACGATAGTGATGAATACCTCCCCAGCAGCTCAGAAGAGGATGAGGAGTCCGGGAAAAACGGCAAGATGAAGAAATACAAAGACGACGGCGATATTGAATACTACCGGCAAAGGATTAGGAAGTGGAAGAGGCAGAGACTCCAGGACAAAGAGCGGAGGAGACAAGCAGGAGAGGATGAGTCTGAGGAGAGCGACGTTGAGTTTGATGAAGGTTTTAAGATGCCAGGCTTTCTGTGGAAGAAACTCTTCAAGTATCAGCAGACAGGTGTCAGGTGGATGTGGGAACTGCACTGCCAGCAGGCAGGAGGCATTCTGGGAGACGAGATGGGCCTTGGCAAGACCATCCAGGTAATTGCCTTCCTGGCAGGCCTGAGCTACAGCAAGCTGAGGACACGCGGCTCCAATTACAGGTATGCTGGATTAGGGCCCACTGTCATCGTATGTCCAGCTACAGTCATGCATCAGTGGGTGAAGGAATTCCATACCTGGTGGCCTCCTTTCCGTGTGGCGGTTCTTCATGAGACGGGTTCCTTTACTAGCAAGCGGGAAAAGCTCATCCCTGAGATAGCTGCTGGTCACGGCATCCTCATCACTTCTTACTCGTATGTGCGGATCATGCAGGATTACATCCAGAAGTACGACTGGCATTATGTCATCCTGGATGAGGGCCACAAGATCAGGAACCCCAATGCAGGAGTCACTGTTGCATGCAAGCAGTTCCGGACCCCTCACCGCTTCATCCTCTCCGGCTCACCCATGCAGAACAACCTGAAGGAGCTGTGGTCCCTCTTTGACTTTGTGTTCCCAGGGAAACTGGGCACTCTTCCTGTCTTCATGGAGCAGTTCTCTGTGCCTATCACCATGGGAGGATATTCCAATGCCTCTCCAGTGCAGGTGCAGACTGCCTATAAGTGTGCCTGTGTCCTGCGCGACAGTATCAACCCGTACCTGCTGAGGAGGATGAAGGCTGATGTAAAGGCTAATCTTGCATTACCAGATAAAAGCGAGCAGgtgctTTTCTGCAGATTAACTGAAGACCAGCGGAAAGTCTATCAGGACTTTCTGGATTCCAAAGAAGTGTATCAGATTCTGAATGGAGATATGCAGGTTTTCTCTGGTCTTATAGCCCTGAGGAAGATCTGTAACCACCCAGACCTGTTCTCTGGTGGGCCACGGCTTCTGAAGGGTGTGCCTGAGGAGGAACTGTCCGAGGAAGAGCACTTTGGGTACTGGAAGCGTTCGGGGAAGCTTATAGTGGTGGAGTCTCTGCTCAGGCTGTGGTATAAACAGGGACATCGTGTCCTGCTCTTCACACAGTCCAGACAGatgctggAGATCCTGGAGGTGTTTGTGAGGGGAAATGGATACTCCTTCCTCAAAATGGACGGCACCACCACCATCGCATCCAGGCAGCCACTCATAGCTCGGTACAATGAGAACAAGGATATATTCGTTTTTCTTCTGACGACCAAAGTCGGAGGCTTGGGTGTCAACCTGACTGGAGCCAACAGAGTCATCATCTACGACCCAGACTGGAACCCCAGTACAGACACTCAGGCCCGTGAGCGTGCCTGGAGGATAGGACAGAAGCAGCAGGTGACTGTTTACAGGCTACTGACTGCCGGGACCATTGAAGAGAAGATTTACCACAGACAGATCTTCAAGCAGTTTCTCACCAACCGTGTGCTCAAGGATCCAAAGCAGCGCCGATTTTTCAAGTCCAACGATATTTATGAGCTTTTTACACTTAGCAGTCCTGATGGCTCCCAGGGAACAGAGACCAGCGCAATATTCGCAGGCACTGGTTCAGATGTACAGATTCCAAAGAGACACAAAACACCTCAGATGCCATCAAAGCCAGCGGAGAGCCAGTCTTCTTCATTGCATGTTAAAGACCAAAATGCTTCCTCAGATCCATCATCACACAGAGGCACTACCTCACTCCGCCTCTCCAACAATAACTCCAAAATAGACTCTTTAAATGTTGAATCCACACAGAACTCTTCTGCAGGCTCGTTAACGAACAGCCCTCAGAATGACCGTTTTGGTCCCAGCActtcacagaaacacagagagaagaagaagcacTGTGACAAAACAGACACGACGAGTGTACCTTCAGATACTCACAAACACAAGCATAAAAAGCGCAAGCACCGAGAGGATGCCCGATTTGAAGGCCATCGCATTTCTCACCTGGTGAAGAAGAGACAGTACAAGAAAGAGGACAATGAGgagcaggaagaaaaaaaagatgagcgcaAGAGTGATGATTATGTTCTTGCCAAACTGTTCAAGAAATCAGGAATACACAGCGTCATGAAACATGACACCATCATGGAGGCATCGAACCCAGACTATGTCCTGGTCGAGGCTGAGGCCAACCGGGTTGCTAAAGATGCTCTGAGAGCACTGAAGGTGTCTAGACAACAATGCAGATTACCCTACTCCAGAGGACCCGCACAAGCCACACCAGCACCTGCCAGGAAAAGATTCGGACAGAAGAAAAATCCAGTACTCGCTCAGCCATCTGGACCCACGCAAAAATCAACAGAGAAGTGCAAGgaTGCAGCTATTATAAAGAAATCCGGGATCAAGAAACCAGGGTCATCTGCCCATTTCAGCGGAGAGGGAGTGGAGGAAGAGTCAGTTTCTGCTTccctctcctcttcctcactgCTGGCCAAAATGAAGGCCAGGAATCATCTTAGCTTACCACAGGgtcaggaagaggaagaggaggtggAAGGAAGCCAGTCTTCTGCCCCTCCTGCCCCACCTACAGAGCACGATGAGCTGCTGGTGGACCTGAGGAACTTTGTGGCCTTCCAGGCTCAGGTGGACGGCCAGGCCAGCACTAAAGAGATCTTAGAGTACTTCACCCCCCGGCTGACCTCCTCACAGACTCCAGTGTTTAGAGAACTGCTCAGGAACATCTGTGACTTCCATAGGACCCCTGGGCAGGAGGGGATGTGGAAACTTAAAACTGACTATAGATGAGGAGAGTGGGATGCGTTGTCCTGTTATACAGAGATTTTATAAGCTTGAAATAATTGAGTACCATTTGTTATGGTATGAATTGACACAGCTTAAGGTTGAATGCAGTTATTTGgcaacactttatttaaagtatacatacatacatacatacatacatgtctTCATAACACATTCGTAAGCAtcatattatgtatttttacagCAGTGCTTGAATATTTATGACCAGCTTATGCCATTACCTACAATATGCCGTAATACAATCAGATTGTATTAATACAACACACATGAGCCTCAAAATAATTCATAGAAATTATCCACATTATTTATAAGTGGGAATCTGTCTTAAGAAAATCCTAACACAAAAAAAGCATATAAGAGTTTTGAACacttcatatacagctctgaaaaaagaggccacttaaaattataagtttctttgattttacaaaattgaaaacctctgg

Function

symbol description
ercc6 Predicted to enable ATPase, acting on DNA. Acts upstream of or within cellular response to DNA damage stimulus and response to UV. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in several diseases, including Cockayne syndrome (multiple); De Sanctis-Cacchione syndrome; UV-sensitive syndrome; age related macular degeneration 5; and primary ovarian insufficiency 11. Orthologous to human ERCC6 (ERCC excision repair 6, chromatin remodeling factor).

NR:

description
DNA excision repair protein ERCC-6

GO: NA

KEGG:

id description
K10841 ERCC6, CSB, RAD26; DNA excision repair protein ERCC-6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249533.3 True 4796 mRNA 0.49 20 18909946 18938453

Neighbor

gene id symbol gene type direction distance location
c25h10orf10 LOC103031081 coding upstream 177425 18731597 ~ 18732521 (+)
LOC103029282 ppifa,LOC108442288,LOC107588732,LOC107668776,LOC108263515,LOC107564349,LOC107673899,LOC105909881 coding upstream 269071 18636068 ~ 18640875 (+)
LOC103028339 LOC108443181 coding upstream 275343 18376648 ~ 18634603 (+)
rps24 LOC102780737 coding upstream 556916 18349740 ~ 18353030 (+)
LOC103025593 LOC108443100,LOC108263458 coding upstream 572125 18322590 ~ 18337821 (+)
drgx drgx,LOC107673892,LOC107548637,LOC107588616,LOC107708289 coding downstream 3795 18942248 ~ 18948011 (+)
LOC107197625 vstm4 coding downstream 36606 18975059 ~ 18990050 (+)
LOC103032870 NA coding downstream 78854 19017307 ~ 19019746 (+)
LOC103033826 LOC108443358 coding downstream 142272 19080725 ~ 19089231 (+)
LOC103035106 arhgap22,LOC108443345,LOC108263673,LOC107668831 coding downstream 157297 19095750 ~ 19144236 (+)
G217439 NA non-coding upstream 136535 18718305 ~ 18773411 (+)
G217442 NA non-coding upstream 159866 18747392 ~ 18750080 (+)
G217438 NA non-coding upstream 195636 18714051 ~ 18714310 (+)
G217435 NA non-coding upstream 210795 18697993 ~ 18699151 (+)
G217433 NA non-coding upstream 214152 18688372 ~ 18695794 (+)
G217472 NA non-coding downstream 572 18939025 ~ 18939903 (+)
LOC111195980 NA non-coding downstream 281060 19219513 ~ 19231760 (+)
G217696 NA non-coding downstream 334484 19272937 ~ 19273154 (+)
G217715 zdhhc16,LOC108443446 non-coding downstream 424225 19362678 ~ 19365255 (+)
G217768 NA non-coding downstream 559611 19498064 ~ 19518320 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other upstream 62918 18837344 ~ 18847028 (+)
LOC103030769 LOC103030769 other upstream 165619 18743206 ~ 18744327 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other upstream 592718 18311893 ~ 18317228 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other upstream 870594 18004253 ~ 18039352 (+)
LOC111195981 tacc2 other upstream 1725695 17149342 ~ 17184251 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other downstream 222200 19160653 ~ 19216989 (+)
rrp12 rrp12,LOC106529656 other downstream 385453 19323906 ~ 19345404 (+)
G217874 nkx2-3 other downstream 1081961 20020414 ~ 20074343 (+)
LOC103032529 prkg1,LOC108443637,LOC108263833,LOC103355670,LOC103373746,LOC107665604,LOC107747254 other downstream 1397494 20335947 ~ 20415643 (+)
mark3 mark3 other downstream 3122510 22060963 ~ 22098259 (+)

Expression


Co-expression Network