drgx (drgx,LOC107673892,LOC107548637,LOC107588616,LOC107708289)


Basic Information

Item Value
gene id drgx
gene name drgx,LOC107673892,LOC107548637,LOC107588616,LOC107708289
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 18942248 ~ 18948011 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249534.3
gagagagagagagagagagagagagagagagagagagaagaggagtaGTCCAGGAGTGACTGACACAGATCTCCACACTAgacaagagagtgagagagagagagtatcttTCACTGCTCTCACAACAAGATCCTCATCACTACAGGACACTTCACAACTCCCAGGAAAGAAGATCCTGAGGAGATCGCCCATATCCTTAACTCAAGTCTGATTTTCTTTTGAGAAAAAGGCCAAGAAGAGCAGCATCATGTTTTACTTCCACTGTCCTCCTCAGCTCGAGGGAGAATGTTGTAGGACAAACTCATTGAACTCCAACGGCTTTGGAAATCACTCCTCTGGAGACTTTGATGATGGTTTTCTTAGGAGGAAACAGCGGAGGAACAGGACAACCTTCACTTTACAGCAGctGGAAGCTCTGGAAGCCGTGTTTGCCCAAACTCACTATCCGGACGTGTTTACAAGAGAAGAACTGGCCATGAAAATCAACCTGACGGAGGCCCGAGTCCAGGTGTGGTTTCAGAACCGGAGAGCAAAGTGGAGGAAGACTGAAAGAGGCAGCTCAGATCAGGAGGGCAGTAAGGAGCAGATGAGTGAAGGGGCCGCCCCTGCTAGAAGCCTCAGCCAGTCCCCTGTGGATCAGAGCAGGAACAAGAAAGAACCTCTGGAAGCACAACAGAATATTAACAGGGCGGTTGGTCCTGGGGGGCCATTTTTCCCATCCTGTTTGCCTGGGACTCTACTAAACACTGCAACTTATGCTCAAGCCTTGTCACAAGTGGCCACTCTAAAAGGAAGCCCCCTCTGCTCTTGCTGTGTGCCAGACCCTATGGGTCTGTCCTTCCTCCCTCCCTACGGGTGCCAAAGTAACCGGACGGCCAGTGTGGCAGCACTGCGCATGAAGGCCAGGGAACACTCTGAAGCTCTGCTGCAGTCTGCTAACCTGCACGGGGCCGTAGGAGCTGTAGGAGCCGTAGGAGCTGTAGGCCTGGGTCACAGCCCTAGCACTGTTGGAGGGGCAGACTCCAGTCCTGGCTCTAGTTCCTCGAAGGTGCCGACCCGAGGAACTTCCCCTGACAAGCAGCTGCACTGCCCCAAGGAAGGCCCGGATAAAAAATAAGGGAGTCCTTTCGCCCAGAAAGCACGTTTGCTCTCGATATAAGGATTTACAATCTCTTGACGAATGCCTGCTGCCCCTTTCCTCACATGCACTGATGTACAGCAGAGGACGAGGTGCTCAGTGCATTCTACTATTGTAGAATTTGAGTGTTTGTGCATCAAACTATTTATTCAATTGTAATTTATCTATTATTGTTACCTACATTTTGCTCATCATTACTGACTGATTTGTTTGCTCATATTGCCACATTGCCAATATTGTAATAGGTTTGGACGGTGGACGGACTGGACTCTCTGAATGCACTGTGTAAGGGGACGTTTTTACCCTGGCTGCCAATGTGAATtcatattttttggaaaatccACTTTGATGTAGGGCTCATACTGCCTTGTATACTGTGAAGTCGGGTGATGTTAGAAACTGCATTGTGTCAAGAACAATTTCTTAatgtaaaacataatatataccatgcacaaatataagaCCTTATGTGAAAGAATTATAATGatgatgaaaataataataatatgcaaatGTA
>XM_015605843.2
agagagagagagagagagagagagagagagagagaagaggagtaGTCCAGGAGTGACTGACACAGATCTCCACACTAgacaagagagtgagagagagagagtatcttTCACTGCTCTCACAACAAGATCCTCATCACTACAGGACACTTCACAACTCCCAGGAAAGAAGATCCTGAGGAGATCGCCCATATCCTTAACTCAAGTCTGATTTTCTTTTGAGAAAAAGGCCAAGAAGAGCAGCATCATGTTTTACTTCCACTGTCCTCCTCAGCTCGAGGGAGAATGTTGTAGGACAAACTCATTGAACTCCAACGGCTTTGGAAATCACTCCTCTGGAGACTTTGATGATGGTTTTCTTAGGAGGAAACAGCGGAGGAACAGGACAACCTTCACTTTACAGCAGctGGAAGCTCTGGAAGCCGTGTTTGCCCAAACTCACTATCCGGACGTGTTTACAAGAGAAGAACTGGCCATGAAAATCAACCTGACGGAGGCCCGAGTCCAGGTGTGGTTTCAGAACCGGAGAGCAAAGTGGAGGAAGACTGAAAGAGGCAGCTCAGATCAGGAGGGCAGTAAGGAGCAGATGAGTGAAGGGGCCGCCCCTGCTAGAAGCCTCAGCCAGTCCCCTGTGGATCAGAGCAGGAACAAGAAAGAACCTCTGGAAGCACAACAGAATATTAACAGGGCGGTTGGTCCTGGGGGGCCATTTTTCCCATCCTGTTTGCCTGGGACTCTACTAAACACTGCAACTTATGCTCAAGCCTTGTCACAAGTGGCCACTCTAAAAGCAGGAAGCCCCCTCTGCTCTTGCTGTGTGCCAGACCCTATGGGTCTGTCCTTCCTCCCTCCCTACGGGTGCCAAAGTAACCGGACGGCCAGTGTGGCAGCACTGCGCATGAAGGCCAGGGAACACTCTGAAGCTCTGCTGCAGTCTGCTAACCTGCACGGGGCCGTAGGAGCTGTAGGAGCCGTAGGAGCTGTAGGCCTGGGTCACAGCCCTAGCACTGTTGGAGGGGCAGACTCCAGTCCTGGCTCTAGTTCCTCGAAGGTGCCGACCCGAGGAACTTCCCCTGACAAGCAGCTGCACTGCCCCAAGGAAGGCCCGGATAAAAAATAAGGGAGTCCTTTCGCCCAGAAAGCACGTTTGCTCTCGATATAAGGATTTACAATCTCTTGACGAATGCCTGCTGCCCCTTTCCTCACATGCACTGATGTACAGCAGAGGACGAGGTGCTCAGTGCATTCTACTATTGTAGAATTTGAGTGTTTGTGCATCAAACTATTTATTCAATTGTAATTTATCTATTATTGTTACCTACATTTTGCTCATCATTACTGACTGATTTGTTTGCTCATATTGCCACATTGCCAATATTGTAATAGGTTTGGACGGTGGACGGACTGGACTCTCTGAATGCACTGTGTAAGGGGACGTTTTTACCCTGGCTGCCAATGTGAATtcatattttttggaaaatccACTTTGATGTAGGGCTCATACTGCCTTGTATACTGTGAAGTCGGGTGATGTTAGAAACTGCATTGTGTCAAGAACAATTTCTTAatgtaaaacataatatataccatgcacaaatataagaCCTTATGTGAAAGAATTATAATGatgatgaaaataataataatatgcaaatGTA

Function

symbol description
drgx Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in nervous system and trigeminal placode. Orthologous to human DRGX (dorsal root ganglia homeobox).

NR:

description
dorsal root ganglia homeobox protein

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24895 DRGX, PRRXL1; dorsal root ganglia homeobox protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249534.3 True 1655 mRNA 0.48 7 18942248 18948011
XM_015605843.2 False 1655 mRNA 0.48 7 18942251 18948011

Neighbor

gene id symbol gene type direction distance location
ercc6 ercc6 coding upstream 3795 18909946 ~ 18938453 (+)
c25h10orf10 LOC103031081 coding upstream 209727 18731597 ~ 18732521 (+)
LOC103029282 ppifa,LOC108442288,LOC107588732,LOC107668776,LOC108263515,LOC107564349,LOC107673899,LOC105909881 coding upstream 301373 18636068 ~ 18640875 (+)
LOC103028339 LOC108443181 coding upstream 307645 18376648 ~ 18634603 (+)
rps24 LOC102780737 coding upstream 589218 18349740 ~ 18353030 (+)
LOC107197625 vstm4 coding downstream 27048 18975059 ~ 18990050 (+)
LOC103032870 NA coding downstream 69296 19017307 ~ 19019746 (+)
LOC103033826 LOC108443358 coding downstream 132714 19080725 ~ 19089231 (+)
LOC103035106 arhgap22,LOC108443345,LOC108263673,LOC107668831 coding downstream 147739 19095750 ~ 19144236 (+)
LOC103036761 LOC108442312 coding downstream 315965 19263976 ~ 19269426 (+)
G217472 NA non-coding upstream 2345 18939025 ~ 18939903 (+)
G217439 NA non-coding upstream 168837 18718305 ~ 18773411 (+)
G217442 NA non-coding upstream 192168 18747392 ~ 18750080 (+)
G217438 NA non-coding upstream 227938 18714051 ~ 18714310 (+)
G217435 NA non-coding upstream 243097 18697993 ~ 18699151 (+)
LOC111195980 NA non-coding downstream 271502 19219513 ~ 19231760 (+)
G217696 NA non-coding downstream 324926 19272937 ~ 19273154 (+)
G217715 zdhhc16,LOC108443446 non-coding downstream 414667 19362678 ~ 19365255 (+)
G217768 NA non-coding downstream 550053 19498064 ~ 19518320 (+)
G217784 NA non-coding downstream 636070 19584081 ~ 19584405 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other upstream 95220 18837344 ~ 18847028 (+)
LOC103030769 LOC103030769 other upstream 197921 18743206 ~ 18744327 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other upstream 625020 18311893 ~ 18317228 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other upstream 902896 18004253 ~ 18039352 (+)
LOC111195981 tacc2 other upstream 1757997 17149342 ~ 17184251 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other downstream 212642 19160653 ~ 19216989 (+)
rrp12 rrp12,LOC106529656 other downstream 375895 19323906 ~ 19345404 (+)
G217874 nkx2-3 other downstream 1072403 20020414 ~ 20074343 (+)
LOC103032529 prkg1,LOC108443637,LOC108263833,LOC103355670,LOC103373746,LOC107665604,LOC107747254 other downstream 1387936 20335947 ~ 20415643 (+)
mark3 mark3 other downstream 3112952 22060963 ~ 22098259 (+)

Expression


Co-expression Network