LOC103032870


Basic Information

Item Value
gene id LOC103032870
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 19017307 ~ 19019746 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249535.3
CACCTCGGGCATGTGTTGCTTAGCAACAAAGTTAAAACAGGACAAAAGTTCTTTCGCCTTCACAGACACGTCTGAGTGAAGAGGCACTTTCTCTAAAGTTTCAGCTGGATATGTGAAGCTGGTTTAAAGTAAACTTAGTAAAATATATCTCTCTTTTGAAACAGAAATGAACGAACTCGTAACGAGAACGCCTGGCTGACTTCAATACAAACAAGGATTACAGACAACGCAAGTGACCTCTTAGACTCAGCTACTATTAATGACACTGCACCATGGCGAAGGGGAAGAAGAGTGGACCAAAGGGCAAAAAGATCACCCTCAAAATGGCCAGGAACGCCCTCAGATTAACCCCTGAAGGAAAACGACGGTTGGACCTGAGCAACATGGGAATCGACACCGTTCCCAAATGCCTCTTGAAACTGTCGGATGTGGAGGAGCTGGACCTGAGTCGCAATCAGCTGAAGAAGATTCCAGACTTCATTGGTCAGATGACCAGCGTCCACTGGCTGGACCTCCACAGCAACTACATCCAGCAGCTGCCGAAGAACATCGAACAGCTGGACACCCTGCGTCACCTCAACCTGAGCAACAACAGGATCAACTCCAGTGGATTACCTGCTGAAATAGGCAACCTGAGGAGCCTGCAGACCCTCAACCTGGGCATGAACCGACTGACCACTCTGCCCCCAAGCATGGCTGCTCTGAGCAACCTGAGAGAGCTGGGTCTGTTCGATAACCAGCTCACTGCTATTCCAGAATATATCCGAGCGCTGCCCAACCTGAAGAAAATCAACACCACACGCAACCCTATAGCCTGCGCTCAAGGAGACAAAAAAGATGTCAAGGCAAGCGAGGGTCTGTTCCTGGTGAGGGAGGAGGACCTGTGTGAGCTCTGCCTGGAGAAGTATAAGGAGGGGAGAAAGAGACTGAATGAGCAAAGGTTTTCAGATCAGTCTCAGAAGAGgggtgctttctcagggctgaTCACACCAAACTCAACAGCGCAGAGAAACCAGGAGCTGTGGCGATAAAAACACTGCCTTAAGACCAGCTTCTAAACAGCAGCAGACTGACCTACCTAAGAATTATATGGACTTTCATATACTGCACAGACTGTGTAATAAGACCGTTCAGAGCTGTAAACACTGCAAATTGGTCatgaaataaaagaacaaaaatgttgactgaaaa

Function

GO: NA

KEGG:

id description
ko04978 Mineral absorption

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249535.3 True 1191 mRNA 0.48 2 19017307 19019746

Neighbor

gene id symbol gene type direction distance location
LOC107197625 vstm4 coding upstream 27257 18975059 ~ 18990050 (+)
drgx drgx,LOC107673892,LOC107548637,LOC107588616,LOC107708289 coding upstream 69296 18942248 ~ 18948011 (+)
ercc6 ercc6 coding upstream 78854 18909946 ~ 18938453 (+)
c25h10orf10 LOC103031081 coding upstream 284786 18731597 ~ 18732521 (+)
LOC103029282 ppifa,LOC108442288,LOC107588732,LOC107668776,LOC108263515,LOC107564349,LOC107673899,LOC105909881 coding upstream 376432 18636068 ~ 18640875 (+)
LOC103033826 LOC108443358 coding downstream 60979 19080725 ~ 19089231 (+)
LOC103035106 arhgap22,LOC108443345,LOC108263673,LOC107668831 coding downstream 76004 19095750 ~ 19144236 (+)
LOC103036761 LOC108442312 coding downstream 244230 19263976 ~ 19269426 (+)
LOC103037070 antxr1d,LOC108443423,LOC108263270,LOC107673963,LOC107668779,LOC107708254,LOC107588727,LOC106589351 coding downstream 260424 19280170 ~ 19316024 (+)
mettl18 NA coding downstream 352827 19372573 ~ 19374811 (+)
G217472 NA non-coding upstream 77404 18939025 ~ 18939903 (+)
G217439 NA non-coding upstream 243896 18718305 ~ 18773411 (+)
G217442 NA non-coding upstream 267227 18747392 ~ 18750080 (+)
G217438 NA non-coding upstream 302997 18714051 ~ 18714310 (+)
G217435 NA non-coding upstream 318156 18697993 ~ 18699151 (+)
LOC111195980 NA non-coding downstream 199767 19219513 ~ 19231760 (+)
G217696 NA non-coding downstream 253191 19272937 ~ 19273154 (+)
G217715 zdhhc16,LOC108443446 non-coding downstream 342932 19362678 ~ 19365255 (+)
G217768 NA non-coding downstream 478318 19498064 ~ 19518320 (+)
G217784 NA non-coding downstream 564335 19584081 ~ 19584405 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other upstream 170279 18837344 ~ 18847028 (+)
LOC103030769 LOC103030769 other upstream 272980 18743206 ~ 18744327 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other upstream 700079 18311893 ~ 18317228 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other upstream 977955 18004253 ~ 18039352 (+)
LOC111195981 tacc2 other upstream 1833056 17149342 ~ 17184251 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other downstream 140907 19160653 ~ 19216989 (+)
rrp12 rrp12,LOC106529656 other downstream 304160 19323906 ~ 19345404 (+)
G217874 nkx2-3 other downstream 1000668 20020414 ~ 20074343 (+)
LOC103032529 prkg1,LOC108443637,LOC108263833,LOC103355670,LOC103373746,LOC107665604,LOC107747254 other downstream 1316201 20335947 ~ 20415643 (+)
mark3 mark3 other downstream 3041217 22060963 ~ 22098259 (+)

Expression


Co-expression Network