LOC103033826 (LOC108443358)


Basic Information

Item Value
gene id LOC103033826
gene name LOC108443358
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 19080725 ~ 19089231 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249538.3
TTAAATCAGGACCGTGCAGTTGGGCAGTAGTAACGGTCGGTTTCGCTTGTTGTGGCTGTCTTCCCTTGTCTTGTTGTTTGGTTAGTTGGCAGCAGCTTCCGTTGCTTTTTCCCAGTAAAGGAGAAAGTTAGACATTATAAATGAAGATCTTGTTCTTTCAGCACTGAGGCTGCTGTTACCGCCACGGTGATGCGGTACAATGTCTTTAAGTACAGTGACTGGAGGAAGCGGGGTGTTTGAGGCTGTTCAGAGAGGAGATACCGAGCGGGTCACCCAGCTCATTGAAGACGACACGACCGTCTTACAGCAGAAAGgttGGGGTGGTTTTACTGCCCTTCATTTTGCTGCTCTTCATGGAAACCGTCCAATAGCTGAGCTCCTCTTAAATTGTGGAGCCGATCCCAACATTCCTTGTGATGCAGGACAAACCCCTTTTCACTTTGCATGCCGACATGGCAACATCAGCATCATGCATAAAATGCTGCAGCATGGTGCAGACCTGGCTGCTGTGGATCTACAGGGGAAAACATCACTCCACCATGCAGTCAGTGGGGGAAACATTGTTGCCATGCAGTATCTGTCAGAGACCACCATGTTCCGGTTTTCAGATGGTGATCACTTCCAGGTCACTCCTCTACACATAGCTGCTTCCATGGGGAATACTGATGTGGTCAGGTACCTTCTACGCAACAATAGATGTGCAGCAGATGCAGTGGACCAGCAGGGGGCGACAGCACTGCACGTGGCTGCAGAGAAGGGCATGATTGAGGTGTGCTGGCTGCTACTGCAGAGTGCGGGATTCCACATTTTACACATGAAAAACCACACTGGCCTCACACCTCTAGACCTCTGTAATCACGGAACCACTTATAGACATCAGCAACTCAGCAAAATCTTAACTCCATTCTACAATAAACCAAAAGATCAGAAACCCAAAGAGTCATATGTGGTGTACTACTGGATGCTTTTGGTGCCCAGTCTCAGTGGGGCAGCAGTGCTCCTCATAGCTGCAGCACTGGGAGAATATGGAGGAGTATTTTGTGGAGTGTTCTTTCCCTGGATGGCAAAAGTCACCCTTTCACAGTACCACAGAATGAGCAGCTATCAGAAGTTACCAAATCCCATCTATCTGGGAACTCTGACTGCAGGCATCGTTCATTCCTTAGTCTGCTTTTACTATAAAATTCTTCCTAGTATTTGGCCAGCACATACACTTTTGCATGTTTCAGTTCTCCATTTCTGTGTGCTTCTTGGGCTTTTCTGGAAAGTTCTGAGACAAAATCCAGGCCGACTCCGAGCAGCTGATGCAGACCACAGGTTCGCCAGCATAGCTGAGCTGCTAAAGGCCAATCAGAATCCCAGTCGTTTCTGCATTTACTGCGAGCTATTTCAAGTGGATAACTGCAAGCACTGCCGCCTGTGTGACTTTTGTGTTCTGGATTATGACCACCACTGCCTCTTCCTCAACCACTGTGTTGGGCGCAACAACCACCGGACCTTCATGCTCTTCATCCTGGCCATGATTGTCGCGCACCTCATCTTCGTCAGCAGCGCTGGCTTTTATCTGTACAGGAGGCTGGCCTTGGAGGAGCACtggagctggacctcagtagcAGGGAGAGAGGCTTGGGTgctcctgctgctcctgctcAACATCCTCACTCTCGTCTGGCAGGTCTGGCTGCTCACAGAGCAGTTTGATGCCATTTCCACTGGAAGCACCAGCTACTTTAGACACTCTCACCGTAAGAAGCTTTCTTGGAGAAAGCGTCTTGCCACAGTTCTCTCTTTTCTGATTGAAGGGAAGAGTTTTAAAGGCCTTCAGCAGAAATCTGTTGACATTTAGTATTAAAATTATCATTTCGGTCATAGACATTTCCTTCACTTCAAAACTCGGGGCTGATTTTATAACTGTGAACTAAAAATCACACCATTTCCTGGTAATGCATCTGTTTCTGTTTACACAAACttgtaatttcctttttttgcacCAAGCTTATTTTCTAAGATTTTAACACTGGCTTACTTCAAGACATTTCATTAATTACTGTGAAATAGGCTTTGAGTTCTTGGGAACTTAATGAACTGTTAATTATTGAGAATTTTTTGTGTAAGTATTAAACCTTTTTCCCCCTCATTTCATTATGTAACTCCCTAGGTCCCCACAAAATCATTGGGGATGCAAACATTTGTATACCTTTGTACAAATATAGTCAATGTCAGGCATGTACAATATGTACAAAATGTCACACAGTCCATGGATTGTCATgagtatttaaacattaaacatggtCTAAATTTCA

Function

NR:

description
PREDICTED: probable protein S-acyltransferase 23 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249538.3 True 2303 mRNA 0.46 10 19080725 19089231

Neighbor

gene id symbol gene type direction distance location
LOC103032870 NA coding upstream 60979 19017307 ~ 19019746 (+)
LOC107197625 vstm4 coding upstream 90675 18975059 ~ 18990050 (+)
drgx drgx,LOC107673892,LOC107548637,LOC107588616,LOC107708289 coding upstream 132714 18942248 ~ 18948011 (+)
ercc6 ercc6 coding upstream 142272 18909946 ~ 18938453 (+)
c25h10orf10 LOC103031081 coding upstream 348204 18731597 ~ 18732521 (+)
LOC103035106 arhgap22,LOC108443345,LOC108263673,LOC107668831 coding downstream 6519 19095750 ~ 19144236 (+)
LOC103036761 LOC108442312 coding downstream 174745 19263976 ~ 19269426 (+)
LOC103037070 antxr1d,LOC108443423,LOC108263270,LOC107673963,LOC107668779,LOC107708254,LOC107588727,LOC106589351 coding downstream 190939 19280170 ~ 19316024 (+)
mettl18 NA coding downstream 283342 19372573 ~ 19374811 (+)
marveld1 marveld1,LOC107665576 coding downstream 294918 19384149 ~ 19387991 (+)
G217472 NA non-coding upstream 140822 18939025 ~ 18939903 (+)
G217439 NA non-coding upstream 307314 18718305 ~ 18773411 (+)
G217442 NA non-coding upstream 330645 18747392 ~ 18750080 (+)
G217438 NA non-coding upstream 366415 18714051 ~ 18714310 (+)
G217435 NA non-coding upstream 381574 18697993 ~ 18699151 (+)
LOC111195980 NA non-coding downstream 130282 19219513 ~ 19231760 (+)
G217696 NA non-coding downstream 183706 19272937 ~ 19273154 (+)
G217715 zdhhc16,LOC108443446 non-coding downstream 273447 19362678 ~ 19365255 (+)
G217768 NA non-coding downstream 408833 19498064 ~ 19518320 (+)
G217784 NA non-coding downstream 494850 19584081 ~ 19584405 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other upstream 233697 18837344 ~ 18847028 (+)
LOC103030769 LOC103030769 other upstream 336398 18743206 ~ 18744327 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other upstream 763497 18311893 ~ 18317228 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other upstream 1041373 18004253 ~ 18039352 (+)
LOC111195981 tacc2 other upstream 1896474 17149342 ~ 17184251 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other downstream 71422 19160653 ~ 19216989 (+)
rrp12 rrp12,LOC106529656 other downstream 234675 19323906 ~ 19345404 (+)
G217874 nkx2-3 other downstream 931183 20020414 ~ 20074343 (+)
LOC103032529 prkg1,LOC108443637,LOC108263833,LOC103355670,LOC103373746,LOC107665604,LOC107747254 other downstream 1246716 20335947 ~ 20415643 (+)
mark3 mark3 other downstream 2971732 22060963 ~ 22098259 (+)

Expression


Co-expression Network