LOC103036761 (LOC108442312)


Basic Information

Item Value
gene id LOC103036761
gene name LOC108442312
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 19263976 ~ 19269426 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249549.3
AACAAGTGTAAAGTGAACAGGTTGAGTGATACGTAGCGGATCAGGCGACTGAGgagagttgtgtttttttagagcTTCAGAACGACAGAAAAAAGGCCAGAAAACGACTGAAACGGGAACAGCGTAGGCCTGAATGGAAGATAACTTTCTGGGGAAAGTTTACTGCGCATGGTCAGACGGTTATTGAGCGTTTAAAAGACTTTTAGTGCTTTCTGACTCGCTCACGTGCTGTATTTTTGAAGCCTAGTTGGTTTCTTGAACTTGctgtggtttatttattttaatatggcGCTGAAACGCCTGTTTTTGCTGCACctgccgccgctgctgctgctgctggtgtcaGAGTCCGTGTTGGGAGAAGCCCCCAGCGCTGAGGAGCGCACTGACAGCACGACCACCGACATGCTGGAGCAACACATGTTCAAACTGTACGAGAAATACAGCAGAGTAGCGCAGGAACCTAAAGAGGGAAACACTGTGAGGAGTTTTAAAGCAAAGACTGAAAACACGGCGCAGAGAGTTTTGTACCGTCTGAATCTAACCTCCCTCCAAGAGTCTGAGGTGATTCTCACAACCACACTGCATTTCTTCTTCGATAAACGCCCACGCCAGAGGTCCTGGTTCTGCAAGCGCCTCAAGAACCCCTCCTGCCGCATCCAGAACCTTCACCAGCTGCCTTCCTTTCGCATCCTTTTCCGATGTCCTTTGTCTGGCTCTTCTCCGGACTTGCTGCTTGGAAACATCACCTTGTATCCTCACAGACGGGGGATTTGGCAGACCAAAGATGTCTCACACATTATAAAGGAGGCGAGAAACAGGAATCGGCTTGTTGTAACACTGGAGTTTGATTATGGAGAAAAGTACCAGAAGTATCAGGACCAGTTGCCAGCATCCAGCCTACCATACATGCTGGTGTATGCCAATGACCTGGCCATATCTGAACCTAACAGTGTGGCTATGAGCTTACAGAGGTATGACCCCTTCGTCGCAGATGAGCAGACCACTCGCTCTCCAAATTCTTCGCCTGACGTGCGAGTCAAGCGGGACTtgtattttcctgaccccatcCAGAACAATGAACTCCCTGAGGTGGAGTACGACAGCTTCAAGCAGCACGATATGTGGGAAAGCACTTATCAACCGCTAAAGCCAAAGCCCTCtaagaaagagaggagaaagaaagtTCAAGAGCACCCTGACAGACTGAACAAGTCTCAGGTTCTCAGCTTTGATGAGAAAACCATGAAGAAAGCAAGGAAGAGACAATGGAAAGAGCCTCGCAGCTGCACCAGGAGGTACCTGAAGGTGGACTTTGCAGACATCGGCTGGAGCGAATGGATCTTGTCTCCGAAGTCCTTCGATGCATACTACTGCGCAGGAACCTGTGAATTCCCCTTACCTAAGATTGTTCGCCCTTCCAACCATGCAACCATCCAGAGCATAGTGAAGACAGTCGGTATCATTCCAGGCATCCCAGAGCCCTGCTGTGTACCTGAGAAAATGAACCCCCTCAGCGTCCTCTTCCTGGATGAGTCCAGAAACATCGTACTAAAGGTTTACCCTAACATGTCTGTGGAGACGTGTTCTTGTCGATAGTCCTGAAGATCAAAGCAGTGATGGCAGAAATAAGTGTTGTGGTTACAACACTAAAAGAACTAAACGTGAACAAGAGGCATATTGTCTTTTATGTTGTTTAAAGGATGTGCTCCCTCCATGTACACTCTTTATTACAGCTTATAGTTTTCTGTTAGTTGCAGTAAACAGTGTACAGAAAATTctgtgtacttttttttatttgtgatgtGCGTTTTATTTTGGTGAACTTGTCTTGTCTATGAGAAGACCACGTGTGTATAATTGTTTGAAGACGTGGTTTAGGTGTTATTGCATTGCTGCTTTCTATGTACATAAAACCTAAAAATGAGCCATTATTTAAAGATGGTCCTTACGGTCTATATTACTAACATTAAGTAGTACAAAAGCTTGGTTTGTAAAGTGCCATGTAGAAATTTCATGGTGGAAAGTGAGTTCATGTAAATGTTGGAATGGAATGAAAATCAATGTCCATAGTGTAGCACTTTCCATGCAACAAGAAGCCCATGTTTAAGTAAACAAAGTTCTTGGTTTGAGTTACtttaaatagtataaaatatttaacactcCTTCGGAACTGTGCTTTCATGTCAAGCATGCATCCGAAAGCATTGGTAGAAACCTAATTCCAAACAGTTCAGTCTCAAAACTAATAAAGAGACTTTGAATCCA

Function

NR:

description
PREDICTED: growth/differentiation factor 10-like

GO: NA

KEGG:

id description
K22674 GDF10, BMP3B; growth differentiation factor 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249549.3 True 2268 mRNA 0.45 3 19263976 19269426

Neighbor

gene id symbol gene type direction distance location
LOC103035106 arhgap22,LOC108443345,LOC108263673,LOC107668831 coding upstream 119740 19095750 ~ 19144236 (+)
LOC103033826 LOC108443358 coding upstream 174745 19080725 ~ 19089231 (+)
LOC103032870 NA coding upstream 244230 19017307 ~ 19019746 (+)
LOC107197625 vstm4 coding upstream 273926 18975059 ~ 18990050 (+)
drgx drgx,LOC107673892,LOC107548637,LOC107588616,LOC107708289 coding upstream 315965 18942248 ~ 18948011 (+)
LOC103037070 antxr1d,LOC108443423,LOC108263270,LOC107673963,LOC107668779,LOC107708254,LOC107588727,LOC106589351 coding downstream 10744 19280170 ~ 19316024 (+)
mettl18 NA coding downstream 103147 19372573 ~ 19374811 (+)
marveld1 marveld1,LOC107665576 coding downstream 114723 19384149 ~ 19387991 (+)
LOC103037144 LOC108443489,LOC103368019,LOC106916418,LOC106964416 coding downstream 504890 19774316 ~ 19804731 (+)
slc25a28 slc25a28,LOC107601050,LOC107719215 coding downstream 738744 20008170 ~ 20019444 (+)
LOC111195980 NA non-coding upstream 32216 19219513 ~ 19231760 (+)
G217472 NA non-coding upstream 324073 18939025 ~ 18939903 (+)
G217439 NA non-coding upstream 490565 18718305 ~ 18773411 (+)
G217442 NA non-coding upstream 513896 18747392 ~ 18750080 (+)
G217438 NA non-coding upstream 549666 18714051 ~ 18714310 (+)
G217696 NA non-coding downstream 3511 19272937 ~ 19273154 (+)
G217715 zdhhc16,LOC108443446 non-coding downstream 93252 19362678 ~ 19365255 (+)
G217768 NA non-coding downstream 228638 19498064 ~ 19518320 (+)
G217784 NA non-coding downstream 314655 19584081 ~ 19584405 (+)
G217787 NA non-coding downstream 329552 19598978 ~ 19599243 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other upstream 46987 19160653 ~ 19216989 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other upstream 416948 18837344 ~ 18847028 (+)
LOC103030769 LOC103030769 other upstream 519649 18743206 ~ 18744327 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other upstream 946748 18311893 ~ 18317228 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other upstream 1224624 18004253 ~ 18039352 (+)
rrp12 rrp12,LOC106529656 other downstream 54480 19323906 ~ 19345404 (+)
G217874 nkx2-3 other downstream 750988 20020414 ~ 20074343 (+)
LOC103032529 prkg1,LOC108443637,LOC108263833,LOC103355670,LOC103373746,LOC107665604,LOC107747254 other downstream 1066521 20335947 ~ 20415643 (+)
mark3 mark3 other downstream 2791537 22060963 ~ 22098259 (+)
G218351 NA other downstream 2947873 22217299 ~ 22218860 (+)

Expression


Co-expression Network