LOC103022067 (slc17a5,LOC107673875,LOC107585335)


Basic Information

Item Value
gene id LOC103022067
gene name slc17a5,LOC107673875,LOC107585335
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 16089846 ~ 16101919 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252223.3
TGTGTGGCCGGTGTTTGAGGCGACGGAGGGCAGAGTAAACAGTTCCACAGACAGGAGCTGCACCATGGAGCCCTCAGGATCAGACTCAGAAACGGATGATTACCAGCAGCCTCTGCTCCACCGGAGAGAAAATGAGGAGGAGGTGAAACGAGCTCCAGCACTCTGCTCTTCACGCTATGGCTTGGCCTTACTGTCCTGTTATGGGTTCTTTGTGGCTTATGCACTGAGGGTCAACCTCAGTGTGGCAATGGTGGACAtgctgaacagcagcagcagcaacagtggTGCCAATGACTCAGTCTGCCCGAGGCACAACAGTCCTGCACGGCCCAAACACAACCACACGGCCAGCGTGTATGACTGGGACTCGGAGACTCAGGGCTGGATCCTGGGCTCTTTCTTTTATGGCTACATCATCACTCAGATACCAGGTGGTTACCTGGCACGCAAGTATGGTGCCAAGTGGCTGCTGGGTTTTGGAATCCTGGGAACTGTGAGCTTCACTCTGCTCACGCCTGTGGCTGCAGACATGGGTGCTGGCTACCTCATTGCAGTCAGGGTGTTGGAAGGCATAGGGGAGGGTGTGACGTTTCCTGCTATGCATGCTATGTGGGCATCGTGGGCCCCACCACTGGAGAGAAGTCGGCTTCTCACAATCTCTTACGCAGGTGCCCAGCTTGGCACTGTGGTAGCTCTCCCCTTGTCTGGACAGATATGCTTTTATTTGGACTGGACATatgttttctacatttttgggGCTGTTGGACTTCTATGGTTTGTCTTGTGGGCTTTTCTGGTCAGTAGCAATCCAAGCTCACATAGGCGAATATCAGACACTGAGAAGACGTACATCACATCTTCTTTAAAAAACGAGCTCTCCCCAACTTCTGACCACATACCATGGATGTCCATCCTAACATCTGTACCTTTATGGGCCATCGTTGTTGCACATTTCTCGTACAACTGGACATTTTACACCTTGCTCACTCTCTTGCCCACCTACATGAATGACATATTGGGCTTCAGCATTAAGCAGAATGGGATGCTCTCTGCTCTGCCCTACTTGGGCTGCTGGTTACTGGCTATGGGAGGAGGCCAGCTGGCAGACTACCTGAGGGAGACCTGCTTCTATCGCACTGTGATCGTGCGCAAGTCCTTCACTATCATAGgtaTGGTGGGTCCAGCTGTGTTTCTGGTGGCAGCAGGATACACTAATTGTAATTACGTCCTTGCTGTTGCTTTCCTCACCATCTCCTCATCTCTGGGAGGCTTATCAGCATCCGGGTTTAACATCAACCATCTAGACATTGCTCCATCatatgcTGGAATTTTGCTTGGAATCACAAACTCGTTTGCGACCGTGCCGGGCATGATTGGTCCTGTGATTGCAAGATCGCTGACCAAATCTaacacaaTTGCAGAGTGGCAGACAGTTTTCTACATTTCAGCTGGGATCAATCTGTTTGGTGCAGTCttttacacagtgtttggaAAAGGTACTGTACAGCCCTGGGCAGTCAACAGAGTGCACATACAATGAAAAACTTTTCAATAAAGTAAAGGGACACAGACTAACAGCATCGGTGGAAAAGTGAAGACAATTCTGTATGAGGACTCCAGCACTACTGATGAAATGTCAGTAAACCTCTACTgtttttgactttgacttttaaatcatttaaagtcAGAATACTAACCAGCTATCAAGCTTAGCCGCCTTAAAAAATATCAATGGATTAAAGTGAGAATATTAAGGTATTCCAGAGAATaccatacatatatacaaatgcTCACCCTTGATTTACCCCTCTGAGGACATGAAGTCACTGTGCTGCAGGCAAGCTGGAGTCACTAATGTTTCTCAGGAAAAGGGAAGTGAGATTTCTCCATGACTCttggggggggaaaaaaaagttattttattcactAAATGGTAATTCGTGCACACGTAAAGAACATTCCTCTGTTAAATGATTTAATGACTGATTAAAATGATCTAAATATGATTGATAGAAAGCAAAGTAATGAGTCATTCCTTTTTTACCTCCTCATTTCTTTGACTTTGGTAACATTACAGCCATTCTGTTATAAAATGTAGCAAAGTGTATtgtcacatttaaaactttTCTCTTCTGGGACTTCTTGTAAAGAATACACTGGGATACATGTCATAAGATGATTGTTATTCACTTGTATTTAAACTAAGATGAAATAAGGgccttattgttctttttttcttttctttgtgccTTAAACTCATATTGTATCCCCTCTTAATTTTTATGGTCTAGATAATACAGGAAAACATGTAGTAGAATATAAAAAGCTGCTTTATGTGTACAACTGTTtacattttgttatttgttactATAATGCGGGTTcattctttttgtttattatgatttacattatttttgtattttatctctACAGTACATTGTTCTTTAATTTGTATAAATGAAAACTCAGGAATATGTAAGGTGAGATTTTGCAGTGAAACAAAATCTAAGCCATATGTCCAAATTAAGCAGTCTAATCTACTGCCTGTTCCCCCTCTTGATCCTGAAAATGATTAGTCACAGAAATTAAAAGGAATTCAATGATCATG

Function

symbol description
slc17a5 Predicted to enable sialic acid transmembrane transporter activity. Predicted to be involved in sialic acid transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be active in lysosome. Predicted to be integral component of plasma membrane. Is expressed in several structures, including axis; cardiovascular system; hatching gland; polster; and yolk syncytial layer. Human ortholog(s) of this gene implicated in sialuria. Orthologous to human SLC17A5 (solute carrier family 17 member 5).

NR:

description
PREDICTED: sialin

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K12301 SLC17A5; MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252223.3 True 2608 mRNA 0.43 12 16089846 16101919

Neighbor

gene id symbol gene type direction distance location
rin2 LOC108442550,LOC107673857 coding upstream 2882 16024820 ~ 16086964 (+)
LOC103022884 NA coding upstream 67007 16017400 ~ 16022839 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 coding upstream 74171 15894605 ~ 16015675 (+)
LOC103023506 LOC103023506 coding upstream 235093 15849852 ~ 15854753 (+)
fancl fancl,LOC107585345 coding upstream 547165 15516738 ~ 15542681 (+)
LOC103021740 LOC108442579,LOC108263602,LOC108258313,LOC108441988,LOC105023253,LOC107716315,LOC107693767 coding downstream 1309 16103228 ~ 16108566 (+)
mb21d1 NA coding downstream 8346 16110265 ~ 16116490 (+)
LOC103032358 asrgl1,LOC103032358,LOC105911569,LOC107695955,LOC107585330,LOC108442615,LOC107673965 coding downstream 337678 16439597 ~ 16452704 (+)
b3gat2 b3gat2 coding downstream 422198 16524117 ~ 16551646 (+)
LOC103035008 slc2a15a,LOC103035008,LOC108442702,LOC107716293,LOC107673883,LOC108262874,LOC107585370,LOC107708408,LOC107696166 coding downstream 750785 16852704 ~ 16879760 (+)
G216831 NA non-coding upstream 166535 15914931 ~ 15923311 (+)
G216793 NA non-coding upstream 420110 15669518 ~ 15669736 (+)
LOC111195977 NA non-coding upstream 1166568 14911999 ~ 14923278 (+)
LOC111195976 NA non-coding upstream 1177859 14892201 ~ 14911987 (+)
G216541 NA non-coding upstream 1344527 14744717 ~ 14745319 (+)
G216893 NA non-coding downstream 6810 16108729 ~ 16109441 (+)
G216894 ddx43,LOC107693529,LOC107588708,LOC105911636 non-coding downstream 15940 16117859 ~ 16128583 (+)
G216910 NA non-coding downstream 153569 16255488 ~ 16323301 (+)
LOC103031925 NA non-coding downstream 353418 16455337 ~ 16469869 (+)
G216953 NA non-coding downstream 383983 16485902 ~ 16487538 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other upstream 1309533 14722400 ~ 14780313 (+)
gsto1 gsto1 other upstream 1742513 14342232 ~ 14347333 (+)
spef1 spef1 other upstream 2339540 13740513 ~ 13750306 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other upstream 2605475 13479176 ~ 13484371 (+)
trnay-gua_11 NA other upstream 2773684 13316075 ~ 13316162 (+)
borcs7 borcs7 other downstream 902622 17004541 ~ 17007537 (+)
LOC111195981 tacc2 other downstream 1047423 17149342 ~ 17184251 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 1902334 18004253 ~ 18039352 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other downstream 2209974 18311893 ~ 18317228 (+)
LOC103030769 LOC103030769 other downstream 2641287 18743206 ~ 18744327 (+)

Expression


Co-expression Network