rin2 (LOC108442550,LOC107673857)


Basic Information

Item Value
gene id rin2
gene name LOC108442550,LOC107673857
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 16024820 ~ 16086964 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252224.3
gagagagagatagtaagtAGAGTTTACAGCTAAACAACATCACTTGTGGAGAGCAGCTCCTCGCTCAGGAATGGGACAGACTCGGAGAGGAGCTCTATTTggctgttgtgttgtgtttttcacTGTTTCACCAATGGACGCTGCTGAACTGTGTTGTGAGCGTGTAGCTGAAGAACAAGCTTCGTGAGAAACCGGAGCTGCTCGAGTCTCAGCCGTCGCCGAGAGCCCTGGCAGCACCAGCTGCATACAGCAGAGCAGCCCGGACGCCATGATGGACGCTGACGCAATGGTGCAGCCCTGCCAAATGGACCGCAGCGGCAGCTTCTTTAAGCTCATAGACACTTTCTCTACTGAGATCTCAGAGCTGAAGCAGGAGATGGTTCAAACAGCCAGAGACCCTGATACTAAGCTCCTACAAGGGCTAGAGGGTGAGGTGAGCGGCCTGTTCCTGCAGTCGTCTGTCTGCACTGGTGCCGTGGGGGTCCGCGACTCGGGCTATGACTCTTTGCGCCGGCGCATGAGTGTTCTCGATAGACTGACGCACACACACTCCGTCTGGCTGCTGCTTTCACTAAGCGATGACGACGCAACTCGCATTCTGGAGGCACAGCCGCCAGGGACCTTCCTGGTGAGGAGGTCATCTAAGCTCCAGAAGAAGGTTATTTCCCTGCGAATGGACAGCGACAGTACCGCATTGACTGTGAGGGACTTCCCAGTCAAAGAGAGCCAATACACCTTCTCCCTAGAGGGCTCGGGGATCAGCTTTGCAGACCTCTTTCGTCTGGTGGCTTTCTGCTGCATAAGCAGGGACGTTCTTCCTTTCACTTTGAAGCTTCCTGAGGCCATTTCTTCTGCAAAGACTCCTTCGGATCTCGAGGAAGTTGCCAAGTTGGGAATAGAGTTTTGGAACTCCAAGTTGTGCCATAAGAAGAAGAGTTCTTTGTCTGATGGAACTCCTCCAGACAATACACCGCAGAGACTGAAGCAGGAGACGCCGAAGACATCCCCCAAAGACGAGGTTCCACCCATCCTGCGCACTCGCAGCCCGTCTCAGCTGGAGTGTAGCCAATCTAATGGAGCATTGTGCTTCATTAACCCTCTCTTCCTAAAGACGCATCGCTCTGACACGACTCAACCTTCATCTGTCTCTGACGACAAAAGCACCAGCTCCTTTCCACTTGACACAAGCAGCGCAAGCCCTCAAAACGACACCGACGTCCTTTGTCGAGACGCTAACACAGAACAGGCTGGCAGAGCAAAGAGCACACCACGTTCCCCTCCACCACGTCCACCTCCACCTCGCACTATCCCACGCAGACCAGCTCTGCCACGCAAGCAAAACAGCATGCCCAGCACGGCCGTGAGCTGGATCAAAACACCGCAGGAGAAAGGTGGCTTGCTGGGACGTCTTGGCTCCTCTTTTGGCTCCTTCTCACCCTCATCTTCGCCCCCAAAGAAGATCAGCTCGCCCATCCCCACACCTTCATCTCGCAACAAAAGATCTCCCAACCTACCCGACGCAGAAGGCCACCGCTGCCACCTGGCACTGGAGGACGAAACCATCGAGGAAGCTGTGTCGCTCAGTTTGGCCAAGCTGTCCTTGAGGAACGCAGCCTTGACAGAGAGCAGTGGCAGTCCCTCTGGACGGGAGCGCCTTAGTGACATAAGCATCTCCTCTACATCTTCCGATTCTCTGGACTTTAATCACAGCTTCTCACTACCAGCAGCTGGCACAAGCCCCTCCAGAACCAACCGAGCAGGAGGTGACAGCAGCccggaagaggaggaagaggaagaggaggaggaagaggaagactTTGGTGTGAGTGTAGAGAGTGACCAGGAGATCAGCATGGAACCACCCTTCAAATCCAAGAAGCGGCACAGTGGTGGCGCCTTCGTGCTGCAGCGGGCGCTGAAGGGCCACCTCCGTAAGGTCAGTGGCGTCTTCAACTCGCtcatgacccctgagaagagggCCATCCGGAGGATCTCAGAGCAATCCCGGGACAAAGGCACTTACTTCGGCTGCCTGGTGCAGGACTATGTAAGCTTCTTGCAGGAGAACCGTGGCTGCCACACCTCAGGACTGGACCTGCTGCAGACGCTCAGGCAGTTCATGACTCAGATGAAGTCCTACCTGCTGCAGAGCTCTGAGCTCGACCCTCCAATCGAGTCTCTCATCCCTGAGGACCAGATTGATCAGGTACTGGAGAAGGCCATGCATAAATGTATACTGAAGCCTCTGAAACCTGTGGTGGAAGCAGCTCTGCACGACTTCGAGATGAGCAGTGGCGCCTGGCAGCAGCTGAAGGAGAATTTGGCACTGGCCAAAACTAAGCAGCCAGCGGAGATGGGTGTAGACGGAGCCATGCCTCCGGACCCTATGGCCATAGAGAAGATCCGACATAAGTTTCAAAACATGAGCAAGCTCTACTCACCAGAGAAGAAGGTGTCACTCCTGCTGCGTGTGTGCAAGCTCATTTACACCATCATGGAAGACAATTCAGGGAGAATGTATGGAGCAGATGACTTCCTACCCATGCTGACCTATGTGTTGGCCCAGTGTGACATGCCTCAGCTGGACACAGAGATTCAGTATATGATGGAGTTACTAGACCCTTCCCAACTGCATGGAGAAGGTGGATACTACTTGACTAGTGCGTATGGAGCCATGTCTCTCATTAAGAACTTCCAGGAGGAGCAGGCTGCACGGGTGCTGAGCTCAGAAACCCGTAACACACTCCACCAGTGGCACAGAAGACGCACAGCCCAGCGCACCACACCAACTGTGGATGACTTCCAGaacTACCTAAGAGTGGCGCTGCAGGAACCAGGCAGCGGCTGCACTGCCAAAACCCTGCAGGTGCGGCCGTACGCCACCACAGAGGAGGTGTGTCGGAAATGTGCTGAAAAGTTTAAAGTCTCGGACCCGGACAGCTATGCCTTGTTCCTGCTGACAGAAGAGACCACACAGCAGCTGGCCCcagacacacacccacaaaAGATCAAAGCAGAGCTGCACAGTCGCCCACAGGTGCTGCCTTTTTACTTCGTCTATCGGCGCATCCAGAACCTCAACCTCACTGTCCCTGCAGATCAACTCAACGGCAACTCCGTGCCTAACTGTGCCTGAAGCTGTCCGGAAGCTGCCGATCATCCGCTGCCTCTCCGGCTTTAATGCAGTGTGtttttccacacaaacacacagctacTGTGTTGTTTTTGAAGCGTTTGCGTTTGAAGGAAACGGAAAATGTCTCTGAGCCGGGAGAAAAGGGGGAAGGAAGGACGTGTCTGACAGATGCAGCATTTTCTCCTGTCTTTTGTCTTGGTTATTTCTGAAACATGGCTTTTTGGGAAGTGGCACGCGACCGTGACATGTGAGGGTAGCTACGTTTGTTTATGCTATAGTGCTAAAACAAAAATAGGTCTTAAAGTGTAAAGTTTACTGGTGCAGTATAAATGAGTATGCTCATGGTGGTTTCAGGCCTATTCAGTATCTTTTTGTCAGGAAAATGTTCTGGGCATTGCACTTTCTATACTTTATAATTCAGTAGTGCCTGTTTTAACTATGCTGAGAAATACTGCAGTGCTTCATACGATTGCTCTCCCATTAAGAGCAAGACCTATACTGTGCATGTGTTAAATGGCCTGCCTGTTCATACTCAAGAGTGGATGGCTTGAGGAGGCTGCTCACCTCACCATCTGCTTTCCGGCATGTTCAGTAAGGCAAGCTGTGCCTTTACCATGGACATATAGGAATGGATATTCATATCCAATCTCCAGTTTCTtataattattatgtttttttatacgtAGTGAAAAAGgtattttgtaatattgttttttttttttggcagttgCTGGTAaactgctttctttttttatatctaaagttattagtataatattgcatgtgtttatttgttggtAAGAAAATATCAAATTAAGAACCAGGCGTTCTCGCCAGTGATATTTTATCCTATGTCttttattataaacaaaatcAGTTAGCTCTGGTAGTCAAACTTTAGTCCACACATTGTTGGTATTCTTctccctgtttatttataatgcattccAGGATGAAGATCAAATCATGAgaccaagttaaaaaaaaaaaaatatactgtactactggCAAGCTAAAAGCTTGTATGTGAATATATCTGATCTTCATCTCAGTTCGTAGTCTTCTGTGGCAAGTTTCTGTAAGTGTGCAATGAGTTACAATGGTTTTTGCAAGTAGGTGCAATGGAGCAGGAGGTGGTATGTAAGGGACACAAAGAAAAAGATGCGAAGatagaaaagaggagaaaaggaaaagaacGGAATCACATTAGGTTTTAGAAGATCGTcacaagtatttttttcatgtttcactgtaaaatatatgatCAGGGAATAATGGGTTAAATGGaggcttttttgtgtttttcaaaaCTGTAAACATACCTACAAATATAACAACTTACCAAGTGTGTGATTTTCTTCTAAAATGCTATGGGTTTATATGTATTGGTGTAAACTCAGGACAGATTAGTTTAAAGAGTCATACGAACACTGTCTGTCAAATATCACATGACCAGATCAGTGAAGTTAGCAGTCTAACATTTTGTAGCATTGATAGAAAAACTTGCCTTCTCTGTCTGGAAACATGTTagcagtgaagtaaaagtgttaaaatgtttgagtgttttttgttgttattgttttgGAGGTCTAGgtttgtaatgtaaatgtaattttaacaaGATATTTGAAGTatgttatgtatatatttatatgtgatCTGTGCAGGGATTTTCAcagattttctgaaaaaaaaaaagaaaacctcaaTTCAGTTGTATTAAAGTGTATTTGTTTGCAAATACTCCACTACTAGCACTCCATTAAGAGTCAGTTTGTCATATGTTGCATTTATTCATGAACAGTACTCTTTTGCACACAATAAATTGAGAATATAAA
>XM_022684688.1
TGTTGGAGTGCACAAATGGGTTCTATTTTGGGTACTGAGAGTAAGAGCCCTGGCAGCACCAGCTGCATACAGCAGAGCAGCCCGGACGCCATGATGGACGCTGACGCAATGGTGCAGCCCTGCCAAATGGACCGCAGCGGCAGCTTCTTTAAGCTCATAGACACTTTCTCTACTGAGATCTCAGAGCTGAAGCAGGAGATGGTTCAAACAGCCAGAGACCCTGATACTAAGCTCCTACAAGGGCTAGAGGGTGAGGTGAGCGGCCTGTTCCTGCAGTCGTCTGTCTGCACTGGTGCCGTGGGGGTCCGCGACTCGGGCTATGACTCTTTGCGCCGGCGCATGAGTGTTCTCGATAGACTGACGCACACACACTCCGTCTGGCTGCTGCTTTCACTAAGCGATGACGACGCAACTCGCATTCTGGAGGCACAGCCGCCAGGGACCTTCCTGGTGAGGAGGTCATCTAAGCTCCAGAAGAAGGTTATTTCCCTGCGAATGGACAGCGACAGTACCGCATTGACTGTGAGGGACTTCCCAGTCAAAGAGAGCCAATACACCTTCTCCCTAGAGGGCTCGGGGATCAGCTTTGCAGACCTCTTTCGTCTGGTGGCTTTCTGCTGCATAAGCAGGGACGTTCTTCCTTTCACTTTGAAGCTTCCTGAGGCCATTTCTTCTGCAAAGACTCCTTCGGATCTCGAGGAAGTTGCCAAGTTGGGAATAGAGTTTTGGAACTCCAAGTTGTGCCATAAGAAGAAGAGTTCTTTGTCTGATGGAACTCCTCCAGACAATACACCGCAGAGACTGAAGCAGGAGACGCCGAAGACATCCCCCAAAGACGAGGTTCCACCCATCCTGCGCACTCGCAGCCCGTCTCAGCTGGAGTGTAGCCAATCTAATGGAGCATTGTGCTTCATTAACCCTCTCTTCCTAAAGACGCATCGCTCTGACACGACTCAACCTTCATCTGTCTCTGACGACAAAAGCACCAGCTCCTTTCCACTTGACACAAGCAGCGCAAGCCCTCAAAACGACACCGACGTCCTTTGTCGAGACGCTAACACAGAACAGGCTGGCAGAGCAAAGAGCACACCACGTTCCCCTCCACCACGTCCACCTCCACCTCGCACTATCCCACGCAGACCAGCTCTGCCACGCAAGCAAAACAGCATGCCCAGCACGGCCGTGAGCTGGATCAAAACACCGCAGGAGAAAGGTGGCTTGCTGGGACGTCTTGGCTCCTCTTTTGGCTCCTTCTCACCCTCATCTTCGCCCCCAAAGAAGATCAGCTCGCCCATCCCCACACCTTCATCTCGCAACAAAAGATCTCCCAACCTACCCGACGCAGAAGGCCACCGCTGCCACCTGGCACTGGAGGACGAAACCATCGAGGAAGCTGTGTCGCTCAGTTTGGCCAAGCTGTCCTTGAGGAACGCAGCCTTGACAGAGAGCAGTGGCAGTCCCTCTGGACGGGAGCGCCTTAGTGACATAAGCATCTCCTCTACATCTTCCGATTCTCTGGACTTTAATCACAGCTTCTCACTACCAGCAGCTGGCACAAGCCCCTCCAGAACCAACCGAGCAGGAGGTGACAGCAGCccggaagaggaggaagaggaagaggaggaggaagaggaagactTTGGTGTGAGTGTAGAGAGTGACCAGGAGATCAGCATGGAACCACCCTTCAAATCCAAGAAGCGGCACAGTGGTGGCGCCTTCGTGCTGCAGCGGGCGCTGAAGGGCCACCTCCGTAAGGTCAGTGGCGTCTTCAACTCGCtcatgacccctgagaagagggCCATCCGGAGGATCTCAGAGCAATCCCGGGACAAAGGCACTTACTTCGGCTGCCTGGTGCAGGACTATGTAAGCTTCTTGCAGGAGAACCGTGGCTGCCACACCTCAGGACTGGACCTGCTGCAGACGCTCAGGCAGTTCATGACTCAGATGAAGTCCTACCTGCTGCAGAGCTCTGAGCTCGACCCTCCAATCGAGTCTCTCATCCCTGAGGACCAGATTGATCAGGTACTGGAGAAGGCCATGCATAAATGTATACTGAAGCCTCTGAAACCTGTGGTGGAAGCAGCTCTGCACGACTTCGAGATGAGCAGTGGCGCCTGGCAGCAGCTGAAGGAGAATTTGGCACTGGCCAAAACTAAGCAGCCAGCGGAGATGGGTGTAGACGGAGCCATGCCTCCGGACCCTATGGCCATAGAGAAGATCCGACATAAGTTTCAAAACATGAGCAAGCTCTACTCACCAGAGAAGAAGGTGTCACTCCTGCTGCGTGTGTGCAAGCTCATTTACACCATCATGGAAGACAATTCAGGGAGAATGTATGGAGCAGATGACTTCCTACCCATGCTGACCTATGTGTTGGCCCAGTGTGACATGCCTCAGCTGGACACAGAGATTCAGTATATGATGGAGTTACTAGACCCTTCCCAACTGCATGGAGAAGGTGGATACTACTTGACTAGTGCGTATGGAGCCATGTCTCTCATTAAGAACTTCCAGGAGGAGCAGGCTGCACGGGTGCTGAGCTCAGAAACCCGTAACACACTCCACCAGTGGCACAGAAGACGCACAGCCCAGCGCACCACACCAACTGTGGATGACTTCCAGaacTACCTAAGAGTGGCGCTGCAGGAACCAGGCAGCGGCTGCACTGCCAAAACCCTGCAGGTGCGGCCGTACGCCACCACAGAGGAGGTGTGTCGGAAATGTGCTGAAAAGTTTAAAGTCTCGGACCCGGACAGCTATGCCTTGTTCCTGCTGACAGAAGAGACCACACAGCAGCTGGCCCcagacacacacccacaaaAGATCAAAGCAGAGCTGCACAGTCGCCCACAGGTGCTGCCTTTTTACTTCGTCTATCGGCGCATCCAGAACCTCAACCTCACTGTCCCTGCAGATCAACTCAACGGCAACTCCGTGCCTAACTGTGCCTGAAGCTGTCCGGAAGCTGCCGATCATCCGCTGCCTCTCCGGCTTTAATGCAGTGTGtttttccacacaaacacacagctacTGTGTTGTTTTTGAAGCGTTTGCGTTTGAAGGAAACGGAAAATGTCTCTGAGCCGGGAGAAAAGGGGGAAGGAAGGACGTGTCTGACAGATGCAGCATTTTCTCCTGTCTTTTGTCTTGGTTATTTCTGAAACATGGCTTTTTGGGAAGTGGCACGCGACCGTGACATGTGAGGGTAGCTACGTTTGTTTATGCTATAGTGCTAAAACAAAAATAGGTCTTAAAGTGTAAAGTTTACTGGTGCAGTATAAATGAGTATGCTCATGGTGGTTTCAGGCCTATTCAGTATCTTTTTGTCAGGAAAATGTTCTGGGCATTGCACTTTCTATACTTTATAATTCAGTAGTGCCTGTTTTAACTATGCTGAGAAATACTGCAGTGCTTCATACGATTGCTCTCCCATTAAGAGCAAGACCTATACTGTGCATGTGTTAAATGGCCTGCCTGTTCATACTCAAGAGTGGATGGCTTGAGGAGGCTGCTCACCTCACCATCTGCTTTCCGGCATGTTCAGTAAGGCAAGCTGTGCCTTTACCATGGACATATAGGAATGGATATTCATATCCAATCTCCAGTTTCTtataattattatgtttttttatacgtAGTGAAAAAGgtattttgtaatattgttttttttttttggcagttgCTGGTAaactgctttctttttttatatctaaagttattagtataatattgcatgtgtttatttgttggtAAGAAAATATCAAATTAAGAACCAGGCGTTCTCGCCAGTGATATTTTATCCTATGTCttttattataaacaaaatcAGTTAGCTCTGGTAGTCAAACTTTAGTCCACACATTGTTGGTATTCTTctccctgtttatttataatgcattccAGGATGAAGATCAAATCATGAgaccaagttaaaaaaaaaaaaatatactgtactactggCAAGCTAAAAGCTTGTATGTGAATATATCTGATCTTCATCTCAGTTCGTAGTCTTCTGTGGCAAGTTTCTGTAAGTGTGCAATGAGTTACAATGGTTTTTGCAAGTAGGTGCAATGGAGCAGGAGGTGGTATGTAAGGGACACAAAGAAAAAGATGCGAAGatagaaaagaggagaaaaggaaaagaacGGAATCACATTAGGTTTTAGAAGATCGTcacaagtatttttttcatgtttcactgtaaaatatatgatCAGGGAATAATGGGTTAAATGGaggcttttttgtgtttttcaaaaCTGTAAACATACCTACAAATATAACAACTTACCAAGTGTGTGATTTTCTTCTAAAATGCTATGGGTTTATATGTATTGGTGTAAACTCAGGACAGATTAGTTTAAAGAGTCATACGAACACTGTCTGTCAAATATCACATGACCAGATCAGTGAAGTTAGCAGTCTAACATTTTGTAGCATTGATAGAAAAACTTGCCTTCTCTGTCTGGAAACATGTTagcagtgaagtaaaagtgttaaaatgtttgagtgttttttgttgttattgttttgGAGGTCTAGgtttgtaatgtaaatgtaattttaacaaGATATTTGAAGTatgttatgtatatatttatatgtgatCTGTGCAGGGATTTTCAcagattttctgaaaaaaaaaaagaaaacctcaaTTCAGTTGTATTAAAGTGTATTTGTTTGCAAATACTCCACTACTAGCACTCCATTAAGAGTCAGTTTGTCATATGTTGCATTTATTCATGAACAGTACTCTTTTGCACACAATAAATTGAGAATATAAA

Function

NR:

description
ras and Rab interactor 2-like isoform X1

GO: NA

KEGG:

id description
K23687 RIN2_3; Ras and Rab interactor 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252224.3 True 4974 mRNA 0.48 12 16024820 16086964
XM_022684688.1 False 4796 mRNA 0.47 12 16043971 16086964

Neighbor

gene id symbol gene type direction distance location
LOC103022884 NA coding upstream 1981 16017400 ~ 16022839 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 coding upstream 9145 15894605 ~ 16015675 (+)
LOC103023506 LOC103023506 coding upstream 170067 15849852 ~ 15854753 (+)
fancl fancl,LOC107585345 coding upstream 482139 15516738 ~ 15542681 (+)
LOC111195974 NA coding upstream 1384277 14639866 ~ 14640543 (+)
LOC103022067 slc17a5,LOC107673875,LOC107585335 coding downstream 2882 16089846 ~ 16101919 (+)
LOC103021740 LOC108442579,LOC108263602,LOC108258313,LOC108441988,LOC105023253,LOC107716315,LOC107693767 coding downstream 16264 16103228 ~ 16108566 (+)
mb21d1 NA coding downstream 23301 16110265 ~ 16116490 (+)
LOC103032358 asrgl1,LOC103032358,LOC105911569,LOC107695955,LOC107585330,LOC108442615,LOC107673965 coding downstream 352633 16439597 ~ 16452704 (+)
b3gat2 b3gat2 coding downstream 437153 16524117 ~ 16551646 (+)
G216831 NA non-coding upstream 101509 15914931 ~ 15923311 (+)
G216793 NA non-coding upstream 355084 15669518 ~ 15669736 (+)
LOC111195977 NA non-coding upstream 1101542 14911999 ~ 14923278 (+)
LOC111195976 NA non-coding upstream 1112833 14892201 ~ 14911987 (+)
G216541 NA non-coding upstream 1279501 14744717 ~ 14745319 (+)
G216893 NA non-coding downstream 21765 16108729 ~ 16109441 (+)
G216894 ddx43,LOC107693529,LOC107588708,LOC105911636 non-coding downstream 30895 16117859 ~ 16128583 (+)
G216910 NA non-coding downstream 168524 16255488 ~ 16323301 (+)
LOC103031925 NA non-coding downstream 368373 16455337 ~ 16469869 (+)
G216953 NA non-coding downstream 398938 16485902 ~ 16487538 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other upstream 1244507 14722400 ~ 14780313 (+)
gsto1 gsto1 other upstream 1677487 14342232 ~ 14347333 (+)
spef1 spef1 other upstream 2274514 13740513 ~ 13750306 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other upstream 2540449 13479176 ~ 13484371 (+)
trnay-gua_11 NA other upstream 2708658 13316075 ~ 13316162 (+)
borcs7 borcs7 other downstream 917577 17004541 ~ 17007537 (+)
LOC111195981 tacc2 other downstream 1062378 17149342 ~ 17184251 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 1917289 18004253 ~ 18039352 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other downstream 2224929 18311893 ~ 18317228 (+)
LOC103030769 LOC103030769 other downstream 2656242 18743206 ~ 18744327 (+)

Expression


Co-expression Network