LOC103022884


Basic Information

Item Value
gene id LOC103022884
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 16017400 ~ 16022839 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252226.3
TGATAACTCCCAATGTTCTGCCAACATTGCTGTGACGTTGCGGTAACGTGATAACGCCTGCTGGTTGGGGACAGTTGGATAAGCACTTCCGCCTCTTtatctctcagtgtttcttatTGGGAATCTTGTGAAGTGTGTTCAGCTCGTGAACTGTGTTTACTGATAGAAACTAGCCGCGCTGCCCGCGGGCTCGCCGAGTTGCGTAATCCATGGAAACGAACAACGGGAACGGGTCAAACTGGGCGATCCAGCGGCGAGTGGAGGGACTGGTGAACAAACACATGGCAGACATGGCACTGGAGACGCTCCAGCAGCGGCTTTCCGCTGTCTCTGAAGAGATCAACCATCTGACTGATGACAGATCCCGGAGAGAAGACGCTCCTAAAGCGGCGGAAGAAGCGCCGCGGCGGACTGAGACCAACTTCAGATCAGAGTCCTCCTACCcccccgcagcagcagcagcagcaggagcgaGAGCGGGGGAAAAGTTAATGCTGAACacaccatcatcatcttcacTGTCCTcgtcatcatcctcatcatcaccagcagcagcagcagcccaatCATCAGAAACTGCAGCCCAAAGAAAGATTATATCGCTCCTACTGGAGATTAAAGAAGAGCAGCAGAGGCAGTGGGCTGTGTTGAAAGACTTGCAGGCCAGAGTTCAAGGACAGGTGTGGGAAGAAGAGGTTGAAGCACTCGACGTAGATCTTCCAGTACGGACTATGGAACAGCTTGATGAGATGGAAAAGCATCTGGAGGACACTGGAGCACAACAGAAAATGGTGTCCCACCTCTCCCGAATGGGTGGAGCAACCGTGGATGATGCGGTGAGGCGCTTGATGCAGGCAGTTTTGTCTTTTGCCGTAGGTTCCGAGTTAAACTGGGTTGGCAGGGGACAAAAAAGGAGCTTCAGAAACACCAGACTGCAAGGGGTATTGTTCCGTGCTTTAAAGAGAACCCCTGTAGGAAAGGAGGCCACACACCATCAGTTTGCAGATGTTGTAAAGAAATGGCTACGATTTGCACCATACAGACAAGGCGGCAGTGGCCGGAGACAGCATTACAAGCCTCCTGTTGAGTTCATGTGCACCAAGTATCCTGATACAGAGGGGTGATTGCATCACAATCACCGCATTTAACCTTATATTTCAACACGgttacatttaaaatcattaaaatctgTCCATTCTGTTTGTGcgtttcaaaatgttttttttttattttttatgatgcaGTGTGTCTAATATTTTGGATAATTGTTTCTGGCTATGACCGTAATCAATAGCATAAATCATGCATATGGTTGAGGTACATTTCAGTATGTCAGAGTTCATGAACAGGAGTGTcctctagagcaggggtcagcaattaagtttgttggccgcgggccagatattttccaagccattacgtggcgggccacaaaaaaaaaaaatctgttttggaaaatgaagtgtaatgggatggagtgctacagactagtagctctccagcccagagggttgttaaacccaactgcagaacagttgatctcaaagcaggtaaacccaagaagaaaggaaaaaataaataaataaacacacagcttcTCACGCGGGATCAAACCTGTGTCATCAGTgtcacggtccaatacactaccgcagcatttttttttctccattatcGTTCAttgtagttcaaacaacctcacgggcgcCGTGCGccacctattgccgacccctgctctagagtTTTTGTCACCTTTGTTGAgcataaaattaaaactgttaaaactaaTCTTTGCTGTTCTTGAGATTAAtctcaaataaacattttatttcttaaaatgtttcacaA

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252226.3 True 1845 mRNA 0.47 4 16017400 16022839

Neighbor

gene id symbol gene type direction distance location
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 coding upstream 1725 15894605 ~ 16015675 (+)
LOC103023506 LOC103023506 coding upstream 162647 15849852 ~ 15854753 (+)
fancl fancl,LOC107585345 coding upstream 474719 15516738 ~ 15542681 (+)
LOC111195974 NA coding upstream 1376857 14639866 ~ 14640543 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 coding upstream 1404832 14608175 ~ 14612568 (+)
rin2 LOC108442550,LOC107673857 coding downstream 1981 16024820 ~ 16086964 (+)
LOC103022067 slc17a5,LOC107673875,LOC107585335 coding downstream 67007 16089846 ~ 16101919 (+)
LOC103021740 LOC108442579,LOC108263602,LOC108258313,LOC108441988,LOC105023253,LOC107716315,LOC107693767 coding downstream 80389 16103228 ~ 16108566 (+)
mb21d1 NA coding downstream 87426 16110265 ~ 16116490 (+)
LOC103032358 asrgl1,LOC103032358,LOC105911569,LOC107695955,LOC107585330,LOC108442615,LOC107673965 coding downstream 416758 16439597 ~ 16452704 (+)
G216831 NA non-coding upstream 94089 15914931 ~ 15923311 (+)
G216793 NA non-coding upstream 347664 15669518 ~ 15669736 (+)
LOC111195977 NA non-coding upstream 1094122 14911999 ~ 14923278 (+)
LOC111195976 NA non-coding upstream 1105413 14892201 ~ 14911987 (+)
G216541 NA non-coding upstream 1272081 14744717 ~ 14745319 (+)
G216893 NA non-coding downstream 85890 16108729 ~ 16109441 (+)
G216894 ddx43,LOC107693529,LOC107588708,LOC105911636 non-coding downstream 95020 16117859 ~ 16128583 (+)
G216910 NA non-coding downstream 232649 16255488 ~ 16323301 (+)
LOC103031925 NA non-coding downstream 432498 16455337 ~ 16469869 (+)
G216953 NA non-coding downstream 463063 16485902 ~ 16487538 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other upstream 1237087 14722400 ~ 14780313 (+)
gsto1 gsto1 other upstream 1670067 14342232 ~ 14347333 (+)
spef1 spef1 other upstream 2267094 13740513 ~ 13750306 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other upstream 2533029 13479176 ~ 13484371 (+)
trnay-gua_11 NA other upstream 2701238 13316075 ~ 13316162 (+)
borcs7 borcs7 other downstream 981702 17004541 ~ 17007537 (+)
LOC111195981 tacc2 other downstream 1126503 17149342 ~ 17184251 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 1981414 18004253 ~ 18039352 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other downstream 2289054 18311893 ~ 18317228 (+)
LOC103030769 LOC103030769 other downstream 2720367 18743206 ~ 18744327 (+)

Expression


Co-expression Network