LOC103031316 (LOC108426755)


Basic Information

Item Value
gene id LOC103031316
gene name LOC108426755
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 14418969 ~ 14430741 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252252.3
GGTACCTAACTGCAGTCAAAAAGCTTCAGAGTCCAGTGAGGACCACAGAGAGAATACACACTGCACCTCAGTGAGCATCACCATGCAGAAACTCAACAACCGGGCAGAGAGCCACCTGAGCAGCCAGGTGGAGTGTGAACTGGAGAACTTGGGGAAAAGGGCATGGGTGAACCAGGCCTACTGCGGCACTCCTCCACCGGTGCATCGCTCCATCAGCACTGTCTATAACCCTCAACCCCTCTTCCACAGCCAGCTGGACAGCATGGGCAAAGTCAGTGCACCCAATCCGTACCCTGCAGAGAACAGCGTGATGAACCAGTACCACGAGAAGAAAAGCTCTGGATGCTGCTCCTTCCTTCTAAGAGGTATTAAAGGGCTGTGGGGAACTACGCTGACAAAAGATACGACAGAGAATCGAGAACTGTTTGTAAGAACCACCCTGCGAGAGTTAGTCGTCTACATTGTTTTTCTTGTGGatatgtgtctgtTGACATACGGTATGACCAGCTCCACCACCTACTACTACACTAAAGTTATGACGGATCTGTTTGTGAACGCTCCGAGTGACAGTGGGGTCACATTCCAGTCCATTGGAACAATGGATGATTTCTGGAGTTATGCACAAGGTCCACTGCTGGATGGTCTCTACTGGACCAGCTGGTACAACAACCAGTCTCTTCagactggaactcactccttcATCTACTATGAGAACATGCTGCTGGGTGTCCCCCGCGTCCGTCAGCTGAAAGTAAAGAACAAGTCGTGTAAGGTGCACAAGGACTTCGAGGAGGAAATCTCTGACTGTTTTGATGTGTACAATGAGAAGAAAGAAGATGACAGCTCATTTGGGCTCATCAATGGGACAGCgTGGCAATACCACACTGAAAAAGAACTAAAAGGGTCAAACCACTGGGGCATGCTGGCCACATACAGTGGAGGAGGGTACTACCAGGACCTGGCCTTAACCAAAGAGGAAAGTGCTGGTGTTCTTGCAAATCTCAACAATAACCTGTGGCTGGACCATGGAACCAGGGCTGTTTTCATCGACTTTTCAACATATAACGCCAATATTAATCTCTTCTGTGTTATTAGATTAGTGGTTGAGTTCCCAGCCACTGGCGGAGCGATCCCTTCCTACCAGATCCGAACAGTGAAGTTGATTCGGTACATTACCACATGGGACTACTTTATCATTGGCTGTGAGATagtgttctgtgtgtttattctgTACTACATTGTGGAGGAGATACTGGAGCTCCGTATACACAAACTCTCATACTTCAAAAGCATCTGGAACATTCTGGATGTGGTGATCATAATGcttgCTATTGTTGCAATTGTCTTCAATGTATTTCGGACCATTAAAGTTGACAAATTACTTGGGAATCTACTAAAAGAGCCGAGCATATATGCAGATTTTGAATTTCTGGCATTTTGGCAAACACAGTACAACAACATGAATGCTGTCAACTTGTTCTTTGCCTGGATCAAGATATTTAAGTACATCAGTTTCAATAAGACGATGACTCAGCTGTCCTCTACTCTGGCCCGCTGCGCCACTGATATCCTGGGCTTTGCCATCATGTTCTTCATTGTGTTTTTTGCTTACGCTCAGCTGGGTTATCTTCTCTTCGGCACTGAGGTTGAATCATTCAGCACTTTTCACAAATGCATATTTACACAGTTTCGCATCATCCTTGGAGATTTTGACTATGATGGCATTGAAAGGGCAAACAGAGTCCTGGGAcccatttacttttttacatatgTGTTCTTTGTGTTCTTTGTACTACTGAACATGTTTTTGGCCATCATCAATGACACATATTCTGAGGTGAAGGAGGAGCTTGCATCCCAGAAAGATGATCTCCAGATTACTGACCTAATTAAACAGagtTATTCAAAAACCTTCATGAAGCTGAAGCTTAAAAAGGAAAAGATCTCCGATGTCCAAAAGGTCTTGCGTTCAGGATCAAAAGAGCTTGAATTCAAAGACTTCAGAGAAACTCTGAAAGAAATGGGTCATGCTGATCATGAGATTTCAGCAGCTTTCTCCAAATTTGACTACGATGGGAACCAGATCCTAGACAAGGAGGAGCAGGAGACTATGAAACAAGAGCTGGAGGAGAAAAGGGATGCACTCAGTGTAGAGCTCCATAATCTTGGaataaactatgaaaaaaatggaaaagaaacaGACGATAATGAGAAAACAAACTCCGTCTTAGTGACTGCGCAACAGTTCCAGATGTTGGTTAAACAGGTGGTTGAACTGGAATGTTCTCTAGCCACCACAATGGCCAAGATTGATGTGGTCATGGAGAAACTGGGACTTCAGGACGctggtaaaacaaacaaaaaagatgccacAGGAAAACATCTGACTATCAGGAATGAGCAGGAGAGGCCTGTCTCTGGAGGGAATGTTCTGGTAAACCTGGACCGAAGCCTGGGGCCATCCTGGCCATCAGCTGCTCGCACTGGGAATGCAGGCAGTGGTTTATATTCAGACATAGGCTGGCCTGTTGTCACAGAAAACAGCACCTCTTCACGCCACTGAAACAGGCACAAGGACACATGGCATCACAGTAATGCACAAACAAATTAAGGCTTTATGAGACACATCATACAACAAATATTGTAGAAATGTTTATAAGTATATAGTGTGGAACAGTGATTACTATTCCTCCTATTGGACATTTGCTTTCCTCTATAGTTAAACTCTAGTCAATCAAATTGTTAACTTCAGATGTTCATAGGAGCAATTCAGTCACCCGATTCGTTACCTTCTCTTTATGGATGTGAAAATGTACAAACATTTACCTGTCAGTCATTGCATGTCTGTTGAAGAAAGTGTGTATTGCTTGGTGTTGGAAGATGATGTAAATGAAGGTAGTTGATCAACTGCTGTCCCTCAACTCCACATTCTGTGGGAGGACATAGAGTAAGCCTGTATTGGCAAAAACATGGTGATACAATAGAGTGGTTATGATTTAATATagcatatttttcgcactataaggtgcacaggataggcgcactatcaatgagcATCTAGTTTCTGGTATTTTTTCGTACAAAAGGCGCATCAGATTATGCAagctagtaaggaacaggggtgtcgcaagctgaacaggggtgtcaaacaagcgctggatgttaatctacacaa
>XM_022684677.1
GGTACCTAACTGCAGTCAAAAAGCTTCAGAGTCCAGTGAGGACCACAGAGAGAATACACACTGCACCTCAGTGAGCATCACCATGCAGAAACTCAACAACCGGGCAGAGAGCCACCTGAGCAGCCAGGTGGAGTGTGAACTGGAGAACTTGGGGAAAAGGGCATGGGTGAACCAGGCCTACTGCGGCACTCCTCCACCGGTGCATCGCTCCATCAGCACTGTCTATAACCCTCAACCCCTCTTCCACAGCCAGCTGGACAGCATGGGCAAAGTCAGTGCACCCAATCCGTACCCTGCAGAGAACAGCGTGATGAACCAGTACCACGAGAAGAAAAGCTCTGGATGCTGCTCCTTCCTTCTAAGAGGGCTGTGGGGAACTACGCTGACAAAAGATACGACAGAGAATCGAGAACTGTTTGTAAGAACCACCCTGCGAGAGTTAGTCGTCTACATTGTTTTTCTTGTGGatatgtgtctgtTGACATACGGTATGACCAGCTCCACCACCTACTACTACACTAAAGTTATGACGGATCTGTTTGTGAACGCTCCGAGTGACAGTGGGGTCACATTCCAGTCCATTGGAACAATGGATGATTTCTGGAGTTATGCACAAGGTCCACTGCTGGATGGTCTCTACTGGACCAGCTGGTACAACAACCAGTCTCTTCagactggaactcactccttcATCTACTATGAGAACATGCTGCTGGGTGTCCCCCGCGTCCGTCAGCTGAAAGTAAAGAACAAGTCGTGTAAGGTGCACAAGGACTTCGAGGAGGAAATCTCTGACTGTTTTGATGTGTACAATGAGAAGAAAGAAGATGACAGCTCATTTGGGCTCATCAATGGGACAGCgTGGCAATACCACACTGAAAAAGAACTAAAAGGGTCAAACCACTGGGGCATGCTGGCCACATACAGTGGAGGAGGGTACTACCAGGACCTGGCCTTAACCAAAGAGGAAAGTGCTGGTGTTCTTGCAAATCTCAACAATAACCTGTGGCTGGACCATGGAACCAGGGCTGTTTTCATCGACTTTTCAACATATAACGCCAATATTAATCTCTTCTGTGTTATTAGATTAGTGGTTGAGTTCCCAGCCACTGGCGGAGCGATCCCTTCCTACCAGATCCGAACAGTGAAGTTGATTCGGTACATTACCACATGGGACTACTTTATCATTGGCTGTGAGATagtgttctgtgtgtttattctgTACTACATTGTGGAGGAGATACTGGAGCTCCGTATACACAAACTCTCATACTTCAAAAGCATCTGGAACATTCTGGATGTGGTGATCATAATGcttgCTATTGTTGCAATTGTCTTCAATGTATTTCGGACCATTAAAGTTGACAAATTACTTGGGAATCTACTAAAAGAGCCGAGCATATATGCAGATTTTGAATTTCTGGCATTTTGGCAAACACAGTACAACAACATGAATGCTGTCAACTTGTTCTTTGCCTGGATCAAGATATTTAAGTACATCAGTTTCAATAAGACGATGACTCAGCTGTCCTCTACTCTGGCCCGCTGCGCCACTGATATCCTGGGCTTTGCCATCATGTTCTTCATTGTGTTTTTTGCTTACGCTCAGCTGGGTTATCTTCTCTTCGGCACTGAGGTTGAATCATTCAGCACTTTTCACAAATGCATATTTACACAGTTTCGCATCATCCTTGGAGATTTTGACTATGATGGCATTGAAAGGGCAAACAGAGTCCTGGGAcccatttacttttttacatatgTGTTCTTTGTGTTCTTTGTACTACTGAACATGTTTTTGGCCATCATCAATGACACATATTCTGAGGTGAAGGAGGAGCTTGCATCCCAGAAAGATGATCTCCAGATTACTGACCTAATTAAACAGagtTATTCAAAAACCTTCATGAAGCTGAAGCTTAAAAAGGAAAAGATCTCCGATGTCCAAAAGGTCTTGCGTTCAGGATCAAAAGAGCTTGAATTCAAAGACTTCAGAGAAACTCTGAAAGAAATGGGTCATGCTGATCATGAGATTTCAGCAGCTTTCTCCAAATTTGACTACGATGGGAACCAGATCCTAGACAAGGAGGAGCAGGAGACTATGAAACAAGAGCTGGAGGAGAAAAGGGATGCACTCAGTGTAGAGCTCCATAATCTTGGaataaactatgaaaaaaatggaaaagaaacaGACGATAATGAGAAAACAAACTCCGTCTTAGTGACTGCGCAACAGTTCCAGATGTTGGTTAAACAGGTGGTTGAACTGGAATGTTCTCTAGCCACCACAATGGCCAAGATTGATGTGGTCATGGAGAAACTGGGACTTCAGGACGctggtaaaacaaacaaaaaagatgccacAGGAAAACATCTGACTATCAGGAATGAGCAGGAGAGGCCTGTCTCTGGAGGGAATGTTCTGGTAAACCTGGACCGAAGCCTGGGGCCATCCTGGCCATCAGCTGCTCGCACTGGGAATGCAGGCAGTGGTTTATATTCAGACATAGGCTGGCCTGTTGTCACAGAAAACAGCACCTCTTCACGCCACTGAAACAGGCACAAGGACACATGGCATCACAGTAATGCACAAACAAATTAAGGCTTTATGAGACACATCATACAACAAATATTGTAGAAATGTTTATAAGTATATAGTGTGGAACAGTGATTACTATTCCTCCTATTGGACATTTGCTTTCCTCTATAGTTAAACTCTAGTCAATCAAATTGTTAACTTCAGATGTTCATAGGAGCAATTCAGTCACCCGATTCGTTACCTTCTCTTTATGGATGTGAAAATGTACAAACATTTACCTGTCAGTCATTGCATGTCTGTTGAAGAAAGTGTGTATTGCTTGGTGTTGGAAGATGATGTAAATGAAGGTAGTTGATCAACTGCTGTCCCTCAACTCCACATTCTGTGGGAGGACATAGAGTAAGCCTGTATTGGCAAAAACATGGTGATACAATAGAGTGGTTATGATTTAATATagcatatttttcgcactataaggtgcacaggataggcgcactatcaatgagcATCTAGTTTCTGGTATTTTTTCGTACAAAAGGCGCATCAGATTATGCAagctagtaaggaacaggggtgtcgcaagctgaacaggggtgtcaaacaagcgctggatgttaatctacacaa

Function

NR:

description
PREDICTED: polycystic kidney disease 2-like 1 protein

GO: NA

KEGG:

id description
K04990 PKD2L1; polycystin 2L1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252252.3 True 3175 mRNA 0.44 15 14418969 14430741
XM_022684677.1 False 3166 mRNA 0.44 15 14418969 14430741

Neighbor

gene id symbol gene type direction distance location
atoh7 atoh7,LOC108426756,LOC107666420,LOC107726941,LOC107601814,LOC107655428,LOC107743508 coding upstream 7546 14410095 ~ 14411423 (+)
LOC103031627 LOC108426796,LOC107559326,LOC107655434,LOC107743509,LOC105911640,LOC106576688,LOC103353499 coding upstream 23901 14382712 ~ 14395068 (+)
calhm2 calhm2 coding upstream 39795 14373831 ~ 14379174 (+)
LOC103038684 LOC103038684,LOC108426744 coding upstream 46142 14367304 ~ 14372827 (+)
calhm3 calhm3,LOC107559321,LOC107578949,LOC102205420,LOC102305682 coding upstream 51784 14364681 ~ 14367185 (+)
bag3 bag3 coding downstream 11935 14442676 ~ 14450871 (+)
inpp5f inpp5f,LOC107666413,LOC107726944 coding downstream 23275 14454016 ~ 14479060 (+)
sec23ip sec23ip,LOC107655440,LOC107666414,LOC107743502,LOC107601884 coding downstream 63112 14493853 ~ 14505846 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 coding downstream 177434 14608175 ~ 14612568 (+)
LOC111195974 NA coding downstream 209125 14639866 ~ 14640543 (+)
G216435 NA non-coding upstream 15505 14402585 ~ 14403464 (+)
G216410 NA non-coding upstream 64150 14353101 ~ 14354819 (+)
G216408 NA non-coding upstream 67056 14351568 ~ 14351913 (+)
G216354 LOC108426801,LOC107726962 non-coding upstream 153620 14255407 ~ 14265349 (+)
G216437 tial1 non-coding downstream 1368 14432109 ~ 14474597 (+)
G216441 mcmbp,LOC107743503,LOC107559330,LOC107655439,LOC107726945 non-coding downstream 57018 14487759 ~ 14488523 (+)
G216505 NA non-coding downstream 183405 14614146 ~ 14616451 (+)
G216508 NA non-coding downstream 186577 14617318 ~ 14618083 (+)
G216507 NA non-coding downstream 192919 14623660 ~ 14630795 (+)
gsto1 gsto1 other upstream 71636 14342232 ~ 14347333 (+)
spef1 spef1 other upstream 668663 13740513 ~ 13750306 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other upstream 934598 13479176 ~ 13484371 (+)
trnay-gua_11 NA other upstream 1102807 13316075 ~ 13316162 (+)
trnay-gua_10 NA other upstream 1103769 13315112 ~ 13315200 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other downstream 291659 14722400 ~ 14780313 (+)
borcs7 borcs7 other downstream 2573800 17004541 ~ 17007537 (+)
LOC111195981 tacc2 other downstream 2718601 17149342 ~ 17184251 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 3573512 18004253 ~ 18039352 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other downstream 3881152 18311893 ~ 18317228 (+)

Expression


Co-expression Network