LOC103036078 (LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922)


Basic Information

Item Value
gene id LOC103036078
gene name LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 13866821 ~ 13870131 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252269.3
TTCAGAGCTGCACAGATCTGTAGAAGCAATACCAAAAGGTTTATAAACATGGTCTCAGGAAACAGACATGGTTGATTCTTTAAAAAGCACTGAAGAGAAAAGTACCATATCCATTCCGTATGAATCTCCCACTATCGAGCAGCTGGAGGACATATTACACGGAGGTCAGCTGTCATGTAATCATGTGGATGAAGTGTGGCCCAACTTGtttctgggagatatGTACATGTCTCATGACAGATATGGTCTATGGAGGCTTGGTGTAACTCATGTTCTGAATGCGGCTCATGGTAAAATGTGTTGCAAAGGAAGTGATGATTTCTATGGAACAACAGTGAAGTACTATGGAGTGGCAGCTAATGATCTGCCTACATttgatatttcacattttttctaCCCTTCTGCCCAATATATTCATCAGACTCTGAGCACTGCTGGAGCCAAGATTTTCGTCCACTGTGCTGTTGGAGTGAGTCGCTCTGCTGCCCTGGTCCTGGCTTATTTAATGATCTTTCACAATTACACACTGGTGGATGCAATCCTGAAAGTCAAGGAAAAGAGGTGGATCTTTCCAAATCGAGGATTTCTTAAACAGCTTATAGCTCTGGACTCAACATTAAAGAGCAAATCACAGACTGAGAAACCTACACAAGATGACTTGTAATTCgctgttttctttactttgtaATTTAAGTGCTTTCATCAATGAAGAAACATAGGTCTAAATAAGGCACatgctttatataaaacatgctTATGCTGGTTTCATTACTTTTCCGTAATATGTACATACTGTTTAGAACATGCACATGCACGTTTCCCAGATCTCTAATGCATGAAACAGTATTGATCTTCAATATCAGATTTTATTTGTGTGCGCATTGATTTTACGGTGAGACAATTAGACAGTTAGACaattgttatatttattattattattattattatttgaaggGAGCAGCTTTCACCTATAAGCATTGTGCATGTAGAAGAGCCCCAAAGTCAAAAAATTAACATATGCTTATATGTTGTCCAATTTCTTCCTAATTATTTGTcattactgtttaaaaatatgtacataatGTTATATGAAACATGTATGTGTACATTTCCCAAGTGGCAAAATCCATGTTTATTTTCCATCTCTTATGCATTGAAACAACATTGAGCTCCTATGCCAtggttatataataataatagcacatAGTTAAAATAATGTTGGAGAAACAGTAATGCAGTATAAGTGATTGCTAGTCAATCACTTATACATTGCATCACAATGTGgtaaaactaaaatgttttattgcttGGCTAAATAATAGTATAATGTTAAGCTACATGTTGCCTGACCAAATAAATGTAACATCAGTATTGCTAACGGAGTTAGCCTACATACAGTTAGGgcttactaataataataggcCTACTTTATCTTATGCTCTTAACCTTCATATTAATAAgattaagtattattattagtttatttgtgTCAGAATTTCAACTGATACTtatgatactgatactgatacttttAAAGGTTGTTTCACCATCAACATTAAATTATGTAATGTGaccaaaaaaaggttttgtattttttttgtcttttgaacTTGTTTAGCATTTTTTCTTCTGACTCTTTATTGTCTATTGCACTTTTGTACAATGTCCTTGCCTGTATAGGCTGCACTTGAGACTTGTACTGTATGACAATAATGACAATGACTGAACCGACTTAAAttggaacaataaataaagtttgatCTAAAGACTTGGTTGTAACAATGTAACTGATTTGTGTTTTCCTCCTGTTTACTAGAGAGCACAATAATAGCAGCTCCAGCCTTTCCCCTCCTTTCTGTCCTGCACTCACTCACCAACTAAATGCGCTACATTTATTTCCCACCTGCATTCCGACAGTTCAGCCTCCTGCGCTGTGATTGGCCAGTATTTTTTACAATTCACCCTTTTCACATGAGAACCACCCCAATAAGGCTACTACTTATTCCCACACATCCCGCCTCTCCTCCAATCAA

Function

NR:

description
PREDICTED: dual specificity protein phosphatase 13-like

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K14165 K14165; atypical dual specificity phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252269.3 True 2033 mRNA 0.36 3 13866821 13870131

Neighbor

gene id symbol gene type direction distance location
LOC103040224 NA coding upstream 36429 13799778 ~ 13830392 (+)
adam8 NA coding upstream 127852 13724592 ~ 13738969 (+)
LOC103037925 LOC103037925,LOC108426815 coding upstream 151467 13712173 ~ 13715354 (+)
fuom fuom coding upstream 221813 13640020 ~ 13645008 (+)
echs1 echs1,LOC107743519,LOC107676592,LOC107601864,LOC107666378 coding upstream 230432 13632198 ~ 13636389 (+)
LOC103035759 zgc:153981,LOC103035759,LOC108426808,LOC108262675,LOC107725455,LOC107666543,LOC107601871,LOC107743612 coding downstream 70 13870201 ~ 13875666 (+)
LOC111195973 dusp13a,LOC108426746,LOC107725429,LOC107666542,LOC108263393,LOC107743611,LOC107601810 coding downstream 11601 13881732 ~ 13887312 (+)
dupd1 LOC108426746 coding downstream 23289 13893420 ~ 13899909 (+)
ap3m1 LOC108426803,LOC107743512,LOC107655430,LOC107559324,LOC107726964,LOC108263184,LOC107666495 coding downstream 351775 14221906 ~ 14228630 (+)
chuk chuk,LOC107726965,LOC107601877,LOC107559325,LOC107743510 coding downstream 461066 14331197 ~ 14339931 (+)
G216310 NA non-coding upstream 31588 13830829 ~ 13835233 (+)
G216307 NA non-coding upstream 75163 13790670 ~ 13791658 (+)
LOC111195921 NA non-coding upstream 90015 13775106 ~ 13776806 (+)
G216303 erlin1,LOC108263345,LOC108426813,LOC103476975,LOC103134047,LOC106944811 non-coding upstream 97387 13766537 ~ 13769434 (+)
G216284 NA non-coding upstream 127012 13739549 ~ 13739809 (+)
G216339 NA non-coding downstream 192819 14062950 ~ 14063241 (+)
G216341 NA non-coding downstream 281351 14151482 ~ 14231704 (+)
G216344 NA non-coding downstream 338308 14208439 ~ 14258450 (+)
G216354 LOC108426801,LOC107726962 non-coding downstream 385276 14255407 ~ 14265349 (+)
G216355 NA non-coding downstream 389212 14259343 ~ 14262684 (+)
spef1 spef1 other upstream 116515 13740513 ~ 13750306 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other upstream 382450 13479176 ~ 13484371 (+)
trnay-gua_11 NA other upstream 550659 13316075 ~ 13316162 (+)
trnay-gua_10 NA other upstream 551621 13315112 ~ 13315200 (+)
LOC103038358 NA other upstream 554334 13308037 ~ 13312487 (+)
gsto1 gsto1 other downstream 472101 14342232 ~ 14347333 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other downstream 852269 14722400 ~ 14780313 (+)
borcs7 borcs7 other downstream 3134410 17004541 ~ 17007537 (+)
LOC111195981 tacc2 other downstream 3279211 17149342 ~ 17184251 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 4134122 18004253 ~ 18039352 (+)

Expression


Co-expression Network