slc3a1 (slc3a1,LOC107585281)


Basic Information

Item Value
gene id slc3a1
gene name slc3a1,LOC107585281
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 27473909 ~ 27492416 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255771.3
ATGAGCCTGAAGAAGGGCGAGGAGAGCTGCGGGGTGGAGATGAAGGAGGGGGTGGAGAACGCGGGGTTTCAGGAGGACTCTCAGGCGGAGGAGGCGAGCCCCCGGCGGGCTGCGGAGCCGGCGGTGTCCGCGGAGAGCTGCGCGGCCGGGGAGGAGAGTTACACGCAGCTCAGGCCGTACGCGGGCATGCCCAAAGAGGTGCTGCTGCTGTACTCCAGCCAGGCGCGCTACCGGGTGCCCCGCGAGATCCTCTTCTGGCTCACCGTGGCCTGCACGCTCGCGCTCGTGGCTCTCACCGTCACCGTCATCGTGCTGTCCCCCCCCTGCCTCAGCTGGTGGCAGACCACCCCCGTCTACCAGGTGTACCCGCGCTCCTTTAAAGACTCCGACGGAGACGGAGTGGGAGACCTCAGAGGTATTAAGGAAAAACTGAGCCATTTCCAGTACCTGAACATCAAAGCAGTCTGGATCAGCCCTTTCTATAAGTCCCCCATGGCTGACTTTGGCTACGATGTGGAAGACTTCAGAAGAGTGGATCCTCTCTTTGGAACGATGGAAGATTTTGATAACCTTTTGGCCAGCATGCATAGCATGGGGCTCAAGCTGATTATGGACTATATCCCCAACCACACCAGCGATAAACACGCCTGGTTCCAGCTCAGCCGCAACCGCACAGATTACTACTCTGACTTCTACATCTGGGTTAACTGCACTGAGGGCATACCGCCTAACAACTGGGTGAGTGTGTTTGGGAACTCCACCTGGACATACGACCCAATCAGGGGGCAGTGCTACTTCCACCAGTTCCTGAAAGAACAGCCAGATCTCAACTTCCGCAACCCTGACGTCATAAAGGAGATGACGGATATAATCCATTTCTGGTTGAAGAAGGGGGTGGATGGCTTCCGCATGGATGCAATCAAGCACATGCTTGAAGCTACGCATTTAAGGAATGAACCCCAGGTTGACCCTAATCAGCCTCCCGAGACTGTGAACACAGAGTTTGAGCTGTATCACGACTACACATACACTCAAGTGGGTCTGCATGACATTCTCAGAGGATGGAGAGTAGATCTGGATGAATACAGCAGAGAACCAGGGCGATACAGATTCATGGTGACTGAGAGTTACGACTATGAAGAAATTGAAAAGACCATGATGTATTATGGAACTGATTTCGTCAAAGAGGCTGACTTCCCCTTTAACTTCTATCTGCTGGACCTTCCTGAGGGTCTGTCTGGGTTCAGAGCCAAAGAACTAGTCGAACTGTGGATGTCAAACATGCCGAAGGGAAAATGGCCAAACTGGGTGGTGGGGAATCATGACAAGCCACGCATGAGCGACAGAGCTGGTGAGGAATACGTCAAAGTCATCAATATGCTACTGTTAACACTGCCAGGAACACCAACTACATATTACGGAGAGGAGATCGGCATGGAAAACGTCAATGTATCCGTTACCCAGGATCCTTTTGGAAAGTTCGACCCAAATAACAGCAGAGATCCTTCAAGAACGCCCATGCAGTGGAGTAATAGTACCAACGCCGGTTTCAGTGACAGTAAGAACGGCACCTGGTTAGACATTGGTCCAAAGTACCAAACAGTCAACGTAGAGATCCAGCAGGGTGACCCGTTCTCTGTGCTGGAGCAGTACAGAGCTTTGAATCTCATCAGAGAGAGGGAAGTAGCACTGGCTCGGGGATGGCTCTGCTATGTCTGGGCCGATAACAACGTGTTTGCTTTCTTACGCGAGCTGGACGGACAGGACCGAGCCTTCTTGGTGGTCCTTAACTTTGgagaaaatgcagaaatggaCCTCTCTGTATTTAAAGAGCTGCCAGATCGCCTCACTCTTCACCACAGTACACTCCCTAATGCTCCGAGCAGCTTCCCTAAGTCCAAAATCACAACCTCCAAGGGGCAGGGACTTCTGCTGGAATACTCCACTAGTAACCGCTTTCATACTGACCATGCAGCCCAGTGTTACGTTTCTGAGAAGGCCTGCTACCTGAGTGCTCTGGACATTCTGTACAAGTGCTGACAATGTAGCAGCAAACATATCACCTGTTTAAGACCCATCTGATTTCCTTTGCTTAGAAAAATGttgaatgttttaattaaactgCAGATGGATTGAA

Function

symbol description
slc3a1 Predicted to enable catalytic activity. Predicted to be involved in amino acid transport. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in cystinuria. Orthologous to human SLC3A1 (solute carrier family 3 member 1).

NR:

description
neutral and basic amino acid transport protein rBAT

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0043169 cation binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K14210 SLC3A1, RBAT; solute carrier family 3 (neutral and basic amino acid transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255771.3 True 2137 mRNA 0.52 10 27473909 27492416

Neighbor

gene id symbol gene type direction distance location
ppm1b ppm1b,ppm1ba,LOC107747533,LOC107666482,LOC107733761,LOC107585253 coding upstream 5925 27432862 ~ 27467984 (+)
abcg8 abcg8,LOC107666472 coding upstream 180824 27282600 ~ 27293085 (+)
cep170 cep170 coding upstream 291992 27094098 ~ 27181917 (+)
LOC103024575 akt3,akt3a,LOC103024575,LOC108422057,LOC107666430,LOC106589689 coding upstream 496135 26827348 ~ 26977774 (+)
adss adss,LOC107585249,LOC107666526,LOC107698758,LOC107733748 coding upstream 753604 26692153 ~ 26720305 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107585255,LOC107733780,LOC107602502,LOC107666367 coding downstream 17798 27510214 ~ 27711719 (+)
six3 six3,six3a,LOC107733790 coding downstream 348428 27840844 ~ 27844241 (+)
LOC103033108 LOC108420482 coding downstream 1086240 28578656 ~ 28607913 (+)
LOC103028596 calm1,LOC102778633,LOC102293206,LOC107396020,LOC105896953,LOC107668515 coding downstream 1123638 28616054 ~ 28621231 (+)
stpg4 NA coding downstream 1131854 28624270 ~ 28631758 (+)
G219657 NA non-coding upstream 65819 27373876 ~ 27408090 (+)
G219620 NA non-coding upstream 131471 27264767 ~ 27342438 (+)
G219651 NA non-coding upstream 143701 27312708 ~ 27330208 (+)
G219643 NA non-coding upstream 169843 27295416 ~ 27304066 (+)
G219639 NA non-coding upstream 210034 27262554 ~ 27263875 (+)
G219891 NA non-coding downstream 436118 27928534 ~ 27928739 (+)
G219896 NA non-coding downstream 455445 27947861 ~ 27948095 (+)
G219917 NA non-coding downstream 690445 28182861 ~ 28185425 (+)
G219914 NA non-coding downstream 727279 28219695 ~ 28224612 (+)
G220032 LOC108422531 non-coding downstream 1072599 28565015 ~ 28568032 (+)
LOC111196018 NA other upstream 237293 27200452 ~ 27236616 (+)
LOC103047652 NA other upstream 2031328 25438719 ~ 25442581 (+)
G219171 cunh4orf32,c3h4orf32 other upstream 2171322 25256950 ~ 25302587 (+)
dapp1 dapp1,LOC107579178,LOC107556904,LOC107667071,LOC107585227,LOC107733757 other upstream 2299201 25161727 ~ 25174708 (+)
G219050 NA other upstream 2631376 24842302 ~ 24842533 (+)
plekhh2 plekhh2 other downstream 998430 28490846 ~ 28551769 (+)
G220074 NA other downstream 1226840 28719256 ~ 28720661 (+)
G220194 NA other downstream 1648951 29141367 ~ 29142018 (+)
LOC103047316 NA other downstream 2143645 29636061 ~ 29640401 (+)
G220336 NA other downstream 2295523 29787939 ~ 29793496 (+)

Expression


Co-expression Network