LOC103035882


Basic Information

Item Value
gene id LOC103035882
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 8209706 ~ 8227224 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256065.2
TAATGGCCCAAGTGTGattatcaccaccaccacctcacATCCTGCCTgcctgtatgtatatatatctaaGCATAGATTCAGTTAAATATACTCTGGTGCATCCAACAGAAGACCAGGTGTATCCAGAGGAGACTGAGAGTTCGAGCTGAAGCTGGAGATGTGgtcagcagtgtgtgttatCACTCTGGGAGTGCTGCTCTCCAGAGCTCAGGCATTTTTGCCAGTTGGAACTAAAGGTAACACACATGTGACTATCACCAAAAATGCAGTGATGAAGAAGATCAATGAAGTGTGTAAAGCTGAGGCTGTGTCAGCAGGCAGAACGTTCAACCCAACGggttcctcagtggaGGAGATACTGCGGGCATGTCTCGGTACATCCACCGGTACAGTCTCTGCAGCTAAGTTTCATGAAGCCCTGAATCAGATCTACCTACAGAACAGCCTGGTGGACCGAGACTTCATGAGCAGTGATCCTCATCACTTCAACAGTGAGGCTTTCATTCAGGGACGCACTCTGATCACGCAGGGCATGGCCACCGTAAAAAACAACATTCGCAAAGAAAACTTCCAGGCTGCCAGAGAAGCACTGGGCAGAGTCCTGCACACTCTTCAGGATTTTTACAGCCACAGTAACTGGGTTGAGCtgggaaacaaaaaaacatacccCAACCTTCTCAGACGTGACCTCACCATCGACAATGTCGCAGcTCCGAACATGGCAACCTGCCGTGATTGTGCCAGTGGAACTTGTCCAAACCAGCTGACGTCCACTATTTTACGCAGGAAGAAACTCACATCTGGATACATCAACCTGACCTCTTCAAACAAACCCAAAGgtaaatgcaGTCACGGTGGGGCTACTGACCTGAGCAGTAAGCAGATGCCTCGGGGTGGGATCAGTAAAGATGAACTGCTGAGCCATAATGCAGAACTGCACAAGGCAGCTGTTGCTCTGGCCACTCAGGCCTCCGTTGAGCTGCTGGACAACATTGTAGCGGCGGTGGGAAATCAGGAATATCTGAGgtTTATGGGTATCACTCGTTTTGTTATTCTGTGCTTTGTGATTGACACAACAGGCAGCATGGCTGACGACATCGCTGAGGCTAAACGAGTTGCACACAACATCATTGACAGTAAGAAAGGGACCCCTGATGAACCTTCAGAATACATCCTGGTCCCGTTCAATGATCCAGATTTTGGACCAGTTATAAGGACCACTGACCCAAATAAGATGAAGGCAGAGATCTCAAAGCTTGGTGCGGACGGGGGCGGGGATACACCAGAGATGTGCATGTCTGGACTGCAGctGGCTCTGACTGCAGCTCCCACTTCTTCTGAGATCTATGTTTTTACCGACGCTCCAGCTAAAGATACACACTTAGAAAAAACTGTCTTTGCCCTCATTGCCAGCACCAAGTCTACAGTGAACTTTTTTAAGACGTCCGGAACGAGATCACGGAGATCAACTGGCAGTTCAGATTTCGAGCTGTATTCTAAATTGGCTTTGGCCTCTGGAGGTCAAGCTATTAGGGTGTCCAAGGCTGAACTGCCAAAGGCCACTGATATCATCATTGATACCTCCACATCAGCTCTGGTGACGATTCTGCAGCGGGCCAGGAAAACAGGCAGTGTGGAGAGTTTCTCCTTCCTGCTGGATTCATCACTTTCCAAAGTCACCGCCTACATCACCGGAGATTCACTCAAATTCACCCTGAAAAGCCCCTCagGTGTGTCTCAGTCTAATAGTGTTGCTTCTGGATCTCTTGCCAAGATTCAGACTGTAGGAAACCTGTGGCGCCTTCAGTTCAACTCTGCCACAGAGACTGGCCTGTGGACCATCAACATGGATTCGAAAGCGGCCTACACTATCAAAGTCACTGgtcaAAGTTcgattacattcatttacaactTTGTGGAGGAATTTAAAGGACCTCACCCAGGGTTTGCTGTGATCGAGGGTCGCCCTCAGACAGGCCTTCCCACTAAGCTGCTGCTAACAGCAACATCACAGAAAGGTGCAGAGTCTCTGACGGTGAAGGAAATCGCTCTAGTGGAGGTTTCAGGTTCTCAGGTGGTGGATGGAAAGATACAGGAGATGGGAGGCGGGGACTTCTTGGTTTCTGTGGATAAGATTCCAGCAGGAGAATTCGTGGTCATGATGAAAGGAGAGGAGAAGGCTTCCTCCAGCAAATTCCAAAGACAGAGCACCACTCAGATGTCTCTGTCTAAAATCACTGTCAAGgCTACAGTAGACAGCACTCTGGTACCAGGAGAATCCTTCAAACTGCCTTTTACTGTAAAAACCAGTGGAAAAAGCGGGACCTACACTATCAGTGCCAGAAATGACAAAGGCTTTCCTCTTGTCTATAGCACATCGGTGAGCCTGGTGACTGGGGTCAGTGCTGCAGGTACAGTGGTTGTGAAACCACCTGCAAACACTGAGTCAGGAACTGAAATCACTCTGACCATCGCCGCTGAAGCTCCAGGGGGATTCGATTCCAACTACGCCATACTCCGCCTTACTGTCCTCGCCAAGGTGACAGATTTCACTCCTCCGGTGTGTGAGATTACGGGTGTAAATTCCGCCTGTCCTTCTGACTGCACCAAGTCTAACTGGGACGTGGCTTTCAACATCACTGATGGAAACGGCACGGGGATTGAGAACATCTTCATCCAGGAAGGCAAAGGAAGCCTCACCCAGAAAACAGTGGTGGAAGGGGGGATAACTGTAGTGAAGGGCAACTTcacctcctcctgctgctcacCTAATGTAACTATATCCATCGTGGATAAGGAAGGAAATGTGGGTAAATGCACTCACTCTattgaggaggaggaggaggaggaggaggagggggaggagaaTAAAGAGGGAGGGCTTGCTTTCAGATTGTTTCTGTCACTGCAGGCCTGGATTAAGCCCTGAATAAACAGCAGGATATCTTTCTACTACTGTCCTGAGAAAGACCAGATTTAaccaatgcaaataaaaaatgaataaaaaaagttaaaagctcAGTTAAACTCTTTCTGACTGCTCATCTCATGTCCCTCttgcagtattaaaaaaaaaaaacacaataaacctACACATTCATTTAA

Function

GO:

id name namespace
GO:0008237 metallopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256065.2 True 3105 mRNA 0.48 17 8209706 8227224

Neighbor

gene id symbol gene type direction distance location
LOC103029427 LOC108434779 coding upstream 3599 8183415 ~ 8206107 (+)
slc43a3 slc43a3 coding upstream 82418 8115079 ~ 8127288 (+)
LOC103028482 LOC108434761,LOC105891496,LOC106611657,LOC101069382,LOC108243062,LOC106594846,LOC106604652 coding upstream 180535 8020649 ~ 8029171 (+)
tmx2 tmx2,LOC108412483,LOC105022872,LOC107664575 coding upstream 317208 7883194 ~ 7892498 (+)
LOC103021660 si:dkey-28b4.8,LOC108434786,LOC107664566,LOC107551445,LOC108262771,LOC107556825 coding upstream 369317 7815823 ~ 7840389 (+)
LOC103029746 LOC103029746 coding downstream 11638 8238862 ~ 8243702 (+)
LOC107197794 LOC108434776,LOC106930291,LOC102224490,LOC103132489,LOC106944652,LOC105931504,LOC103464124,LOC107393648,LOC106518818 coding downstream 18339 8245563 ~ 8252571 (+)
LOC103036505 LOC107556808,LOC107556784 coding downstream 27360 8254584 ~ 8266613 (+)
galnt2 galnt2,LOC107725470,LOC107676591,LOC107666462,LOC107743534 coding downstream 79018 8306242 ~ 8453818 (+)
cog2 cog2,LOC107601846,LOC107725477,LOC107552949,LOC107666500,LOC107743537 coding downstream 287134 8514358 ~ 8530448 (+)
G214704 ctnnd1 non-coding upstream 124429 8074834 ~ 8085277 (+)
LOC111195956 NA non-coding upstream 280541 7927113 ~ 7929165 (+)
G214684 NA non-coding upstream 283202 7899502 ~ 7926504 (+)
G214686 NA non-coding upstream 301939 7905695 ~ 7907767 (+)
G214670 NA non-coding upstream 359273 7849697 ~ 7850433 (+)
LOC111195960 NA non-coding downstream 10418 8237642 ~ 8245015 (+)
G214853 NA non-coding downstream 227520 8454744 ~ 8456163 (+)
G214868 NA non-coding downstream 388869 8616093 ~ 8658455 (+)
G214875 NA non-coding downstream 470704 8697928 ~ 8699697 (+)
G214881 NA non-coding downstream 491599 8718823 ~ 8722998 (+)
G214773 NA other upstream 98381 8110948 ~ 8111325 (+)
LOC103021346 LOC108412479 other upstream 332588 7856162 ~ 7877118 (+)
pold4 NA other upstream 396670 7810978 ~ 7813036 (+)
LOC111196031 NA other upstream 1800638 6399076 ~ 6409068 (+)
G214175 NA other upstream 1925338 6283781 ~ 6284368 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other downstream 731075 8958299 ~ 9030598 (+)
sprn sprn other downstream 2348271 10575495 ~ 10583088 (+)
G215513 polr1b other downstream 2719855 10947079 ~ 10948287 (+)
cpeb3 cpeb3,LOC106604870 other downstream 2898476 11125700 ~ 11195423 (+)
LOC111195936 NA other downstream 3383094 11610318 ~ 11613123 (+)

Expression


Co-expression Network