cog2 (cog2,LOC107601846,LOC107725477,LOC107552949,LOC107666500,LOC107743537)


Basic Information

Item Value
gene id cog2
gene name cog2,LOC107601846,LOC107725477,LOC107552949,LOC107666500,LOC107743537
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 8514358 ~ 8530448 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256069.3
GTGAGTGATGCTGGATGGAGCCCGGCGGGGGGCGCTGGAGGGATCTCTCCGCTTCAGCTCCACACTGACTGCTGCTCGTGCCATGTTTGCGGAAGTGTCTGTATGGAGCTGAAGAACATTAGACAGTGTAGTTTAGTGAATAATGGACTTTAATGCCGCAGAGTTTCAGCAATAAACAGCCggacagcagcactgctgtgctcaGACTCACTAATGATGAACCTGCCGAAGGGACCAGACTCTCTGTGCTTTAATAAAGACGAGTTTATGAAGGATGACTTTGATGTGGACAGATTTGTGGCCGAGTGCAGGAAACATGTGCAGCTGGAGCAGATGCGGGAGGACCTGGAGCAGTATTACAGGCTCCTCAAAACTGCTATGGTTGAGCTCATCAACAAAGACTATGCAGATTTTGTCAACTTGTCCACTAATCTTgTTGGAATGGATAAAGCCCTCAACCAGCTTTCTGTTCCGCTGGGCCAACTACGTGAAGAAGTGCTGAGTCTCAGGTCAGCAGTTAATGAAGTAATCCAAGCCATAGATACACAGTTGTCCAAACAAGATGACATTCAAAAGAAAAAGATCAGTGTATTGAGACTCATACATGTCGTTCGGTCGGTGGAGAAGATTGAGAAAATCCTACACTCTCAAAACGCCAAAGACACAACATCTCTAGAATCTAGCAGTCCTTTACTAGCTGGTCAGATTCTCGAGCGGATTGCCACTGAGTTTAACCAGCTGCAGTTTCATGCGGTCCAGAGCAAAGGGATGCCACTGCTGGACAAAGTGCGACCGAGGATTGCTGGCATTACTGCTATGCTCCAGCAGTCTTTAGAGGGTCTACTAATCCAGGGTCTGCAGACATCCAACGTGGACATTGTGCGGCACTGCCTCCGCACATACGCTACCATCGACAAGACTAGAGACGCAGAGGCACTGGTGGGACAAGTCTTAGTTAAGCCTTACATGGATCAGgttATAACTGAGCAGTTTGTGAAGTCCAGCCCTAATGGTCTTCAGCTGATGTATGCAAAGCTGCTGGAATTTGTGCCTCATCATTGCCGACTGCTCCGAGAGGTCACAGGAGGGACTATTTCCAGTGACAAAGCTGACATCGTGCCAGGTTACGACTTCCTGGTTAACTCGGTCTGGCCTGAGATCATTAAAGGTGTTGAGGGGCGGATTCCCTTCCTTTTCAACCCTGGCAACCCTGATGCTTTTTATGAGAGATACTGCATTAGCATGGACTTTGTACGGAAGTTTGAAAGACAGTGTGGCTCTCAGGCTAGTGTGAAGAGGCtccgagcacacgcctcctacCAAAGCTTCCACAACAAATGGAACCTCCCTGTCTACTTTCAGCTACGGTATAAGGAGATTGCTGCATGTTTAGAAAACGCCATTACAGAAGGACTAGGAGCAGCTCCAGtgGGCAGCCGCTACCGTCTGCAGGTGACTGAGGTGTtatggagctgtgtgtgtaggtgttggGCGGAGCACATCTACCTGCCTCCGCTGGCTCATCGTTTCTGGAAGCTAACACTACAGCTTCTCTCCAGATATGCTGCGTTCCTCACTGAGGTTCTAACAAAAACGCCGCCTCCTGAATCTACCAAAGACCCAGTGAGGCCACTGCCAAGCTCCGCCTCCTCCACATCAAGCCGCACCTCTCAAGATGCAGACAGTGAGAGCGGAGGACCCACAGCTCTCTCCACCAAACAGCTGGTCTTCATCGCAGCTGATGTGGACCATTTACAGGAGCAGATTCCAGAAATCTCTGAGCTGATCCGAGAGAGACTTGAGGGAATAGGATTCAAAATCTTTGCTCTTGTTTCAGATGCCTTGGAAGACTCCAAATCTGCCTTGTCTGTATGCATCCCAACACTGAGCAACAGAATGACTCAGCATCTGACGGAGAGGAGTGTCCGCTTCCTGAAGAATGCTTCAGAAGTCCCGCGACTTTATCGAAGGACCAACAAGGAAGTGCCAACCAGAGCCTCGGCCTACATGGATAACGCTTTGCGGCCACTTCATCAGCTGGTCACTGACTCCACAGGTGTGGTGAAGGACTCCATCATCCAGCAGTGGCTACGTGTTACTCTTTCAGATTGCACCCACAGATACTTTGAGACCATATCTGATGTGCTGAGCTCCGTGAAAAAGATGGAGGAGAGTCTGAAGCGGTTGAAACAGGCGAGGAAAACCGCCACAACCAGCACAGCAGGAGCCAACACCGGCCCCTCTGATGACTCTAAGATCCGTCTGCAGCTGGCTCTGGATGTGGAGTATCTCGGAGAGCAGATTCAGAAGATGGGTCTTCAGCCAAGTGACATCCCCATGTTCTCCTCTCTGCTGGACTTGGTGCAAGAAGCAAGGGATCTGGCCACAGCAGAGCAAGCCGGTTCCTAGGAGTCACCTTCCGGGTTTCCTCATCCCACATGGACTCAGCAGACACATGCTCTAAGCAGTGAAGGGAGTAAAGGAAAAGGGCTGCCCTTATAGTTCTTATGTTGCAATTCTCAGAACCCTGGTGGTCTAATTACAGTTATTAGGCTGAATCACGGCTGATCTGGGATTCCCAGCTGTAACCTTTTCCCGTGCAGTGAAGAAGCACACAACAAGAATGTGTCTACACACTCAGATCTTATTTATTCTGCAATCAGATCAGATAATatgtaacaaaaatgtttaatatcagaATTAACACAGTGAGATTATATATATCATGTAAATGTTAATTCTTAACATGTTAGGATTCGAGAAGTGAGTGGGGTTTGTATGCTGTGTGTCATGTGTCACGGTTCATGTTGTTATGACCTGTCATGCACTCTTGCATTAAGCCATGAAATTAGTATGATGACTAATGACTCTGAAAACtggtcttatttaaaaaaaaaaaaaaaaaaaatcgctatTTCATGACCTAAGCTGACCTCAGCTTCTCTATCAGAATGAATCCATAAAACACCTCCGCCACAGTGCCTCCTCTGAGGCCTGCCAGGCAACATGAAGCCCAGAGCCCTGTAGAGCCTCGCGGGATTATATTGGCATTTTAAACACCATGGGAACATGGCCGTTATACTTTACATGTTGTTTTACTGGACAAGAATGGGACGTCTGTAACTTTTAACCATAGatttgacaataaaaaaaaggtttgggaTAATA

Function

symbol description
cog2 Predicted to be involved in Golgi organization and intra-Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be part of Golgi transport complex. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIq. Orthologous to human COG2 (component of oligomeric golgi complex 2).

NR:

description
conserved oligomeric Golgi complex subunit 2-like isoform X2

GO:

id name namespace
GO:0007030 Golgi organization biological_process
GO:0015031 protein transport biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K20289 COG2; conserved oligomeric Golgi complex subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256069.3 True 3168 mRNA 0.48 18 8514358 8530448

Neighbor

gene id symbol gene type direction distance location
galnt2 galnt2,LOC107725470,LOC107676591,LOC107666462,LOC107743534 coding upstream 60540 8306242 ~ 8453818 (+)
LOC103036505 LOC107556808,LOC107556784 coding upstream 247745 8254584 ~ 8266613 (+)
LOC107197794 LOC108434776,LOC106930291,LOC102224490,LOC103132489,LOC106944652,LOC105931504,LOC103464124,LOC107393648,LOC106518818 coding upstream 261787 8245563 ~ 8252571 (+)
LOC103029746 LOC103029746 coding upstream 270656 8238862 ~ 8243702 (+)
LOC103035882 NA coding upstream 287134 8209706 ~ 8227224 (+)
phactr2 phactr2 coding downstream 10517 8540965 ~ 8649769 (+)
LOC103040587 rgs17,LOC103040587,LOC108262465,LOC108434957,LOC107725462,LOC107552952 coding downstream 300797 8831245 ~ 8861433 (+)
LOC103042822 si:ch211-120p12.3,LOC108434955,LOC108263591,LOC103372805,LOC107375814,LOC107676554,LOC107666507,LOC107552954 coding downstream 390020 8920468 ~ 8940545 (+)
LOC103044072 LOC108443735,LOC108263510 coding downstream 733191 9263639 ~ 9293642 (+)
kif1bp kif1bp,LOC107743600 coding downstream 902156 9432604 ~ 9440914 (+)
G214853 NA non-coding upstream 58195 8454744 ~ 8456163 (+)
LOC111195960 NA non-coding upstream 269343 8237642 ~ 8245015 (+)
G214704 ctnnd1 non-coding upstream 429081 8074834 ~ 8085277 (+)
LOC111195956 NA non-coding upstream 585193 7927113 ~ 7929165 (+)
G214684 NA non-coding upstream 587854 7899502 ~ 7926504 (+)
G214868 NA non-coding downstream 85645 8616093 ~ 8658455 (+)
G214875 NA non-coding downstream 167480 8697928 ~ 8699697 (+)
G214881 NA non-coding downstream 188375 8718823 ~ 8722998 (+)
G214942 NA non-coding downstream 308106 8838554 ~ 8841483 (+)
G214947 NA non-coding downstream 347910 8878358 ~ 8881610 (+)
G214773 NA other upstream 403033 8110948 ~ 8111325 (+)
LOC103021346 LOC108412479 other upstream 637240 7856162 ~ 7877118 (+)
pold4 NA other upstream 701322 7810978 ~ 7813036 (+)
LOC111196031 NA other upstream 2105290 6399076 ~ 6409068 (+)
G214175 NA other upstream 2229990 6283781 ~ 6284368 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other downstream 427851 8958299 ~ 9030598 (+)
sprn sprn other downstream 2045047 10575495 ~ 10583088 (+)
G215513 polr1b other downstream 2416631 10947079 ~ 10948287 (+)
cpeb3 cpeb3,LOC106604870 other downstream 2595252 11125700 ~ 11195423 (+)
LOC111195936 NA other downstream 3079870 11610318 ~ 11613123 (+)

Expression


Co-expression Network