LOC103044072 (LOC108443735,LOC108263510)


Basic Information

Item Value
gene id LOC103044072
gene name LOC108443735,LOC108263510
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 9263639 ~ 9293642 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256092.2
GTTATTACGCAACTGATCTCACGCATGGGCATGACAGGACAGTGAAAACCTGTGAACAGTGGAAACTGTACAAAAAGAGAGCGTGAGGTGTTGGTTTATCTGCTTCCTGCTGAAAGCTGAGGATGAAGCCGGTGATGGTGGTGCACGGTGGGGCGTGGGCTATACCGGATGCGTTTGCCGAGGCGTCTGTGGCCGGGGTGAAGGCTGCTGCTCGGGCGGGGAACGCGGTTCTGAAGATTGGGGGAAGTGCACTGGATGCTGTTGAGGCTGCTGTGAGGATAATGGAGGATGATCCAGTATTTGATGCTGGTCACGGAGCCGTGCTGAATACTGATGGAGAAGTGGAGCTGGACGCCATCATCATGGAGGGAAAAACACTGGCCGCCGGAGCTGTTTCTTCAGTCCGAAACATCGCCAACCCCGTTAGCCTCGCCCGCGCCGTGATGGAAAAGacCCCCCATGTCATGTTGACCGACCGCGGAGCAAACCAGTTTGCAGAAAGCATTGGCATTAGCATGCTGCCCACAGACGCTCTGGTGACtgaggaagagaggagagagtgggAACACTGTAAGAAGTATGTTGTTGGTGTCAAAGAGCTCTTTAACTCACAATGGGGCCACGACACTGTCGGAGCTGTGGCGCTGGATTCTATGGGTAATGTCGCCTGTGCGACTTCAACTGGAGGAATCAGGAACAAAATGGTGGGAAGAGTCGGAGATTCTCCCATTATAGGATCAGGTGGATATGCAGACAATAAGAGTGGTGCAGTGTCCTGCACTGGTCACGGAGAGTCTATTCTCAAAGTCACCTTAGCCAGGCTCATCCTCTTTCACATGGACCAAGgacGGACGGCCTCTGAAGCAGCTGAGCACTCTCTGCAGTACATGGGCGAGCGTGTgcagggtggtggtggggttATAGTCGTGTCCCCCACCGGAGACTGGACCGCCACATTCACCACAGAGCGCATGGCCTGGGCAGCCGTGGATGAGGATGTTCTGAGCTATGGATTAAATCCTAAAGACAAATTTACGGAAACAGTTAATTAATACTTATAATGATAGATTTCtatgtacatacagctctggaaaaaagtaagagaccacttaaaattgatgagtttctttaattttaccaaattggaaacctctgggatttaatcaagagtaagatggatgatcacaagccatcaaaccaagctgaactgcttgaatttttgcatcaggagtaaaggcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgccaagatgcataagaAACAGGGTTaatcctccaaatattgatttctgaactttcttgttttctttgcattattcaaggtctgaaagctctgcatattttttgttattttctgcaaaatagtttatagaataaaacaacaatgttcattttactcaaacataaacctataaatagcaaaatcagagaaactgattcataaactgaagtagtctcttaatgttttttttccagagcaggtTTGACTATTAAATCCTCCCTATGTAACAGACTTTACTAATAAAACACACTCTATTAACTGTTCTccttattaaaaatatagacCTACATTTATCTTTTGATACATCTCCACTAAATGGGCTGCTGTGTTATTTAAAcactaaaagaaaaagaaaggaaattaTTAATCTGGGAGGAGAAAAACTGTAGCTTGTTGATTAACTATAAGAATGATGCATTCATTTCAAAAACACTCATTTGTGCTTAATTCACTACATAATTTCAGTCTAatgtaatacaaataaaatattgcactGTATTACAAGCTATTATACATATGTCAACATTCATCTACTATACAAGACTGAAATACACAGTGTACATGGTGCAGCTAAATCACAGCACTAGAGCTGAGAATgagaattaaatatttttgcacTA

Function

NR:

description
PREDICTED: isoaspartyl peptidase/L-asparaginase-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K13051 ASRGL1, iaaA; L-asparaginase / beta-aspartyl-peptidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256092.2 True 1942 mRNA 0.43 7 9263639 9293642

Neighbor

gene id symbol gene type direction distance location
LOC103042822 si:ch211-120p12.3,LOC108434955,LOC108263591,LOC103372805,LOC107375814,LOC107676554,LOC107666507,LOC107552954 coding upstream 323094 8920468 ~ 8940545 (+)
LOC103040587 rgs17,LOC103040587,LOC108262465,LOC108434957,LOC107725462,LOC107552952 coding upstream 402206 8831245 ~ 8861433 (+)
phactr2 phactr2 coding upstream 613870 8540965 ~ 8649769 (+)
cog2 cog2,LOC107601846,LOC107725477,LOC107552949,LOC107666500,LOC107743537 coding upstream 733191 8514358 ~ 8530448 (+)
galnt2 galnt2,LOC107725470,LOC107676591,LOC107666462,LOC107743534 coding upstream 809821 8306242 ~ 8453818 (+)
kif1bp kif1bp,LOC107743600 coding downstream 138962 9432604 ~ 9440914 (+)
srgn srgn coding downstream 167688 9461330 ~ 9466106 (+)
vps26a vps26a,LOC107666532 coding downstream 175442 9469084 ~ 9480545 (+)
supv3l1 supv3l1,LOC107725491,LOC106612443,LOC107601833,LOC107666535 coding downstream 189956 9483598 ~ 9494529 (+)
LOC103047009 hkdc1,LOC103047009,LOC106612435,LOC107676583 coding downstream 203192 9496834 ~ 9515939 (+)
G215011 NA non-coding upstream 193772 9068995 ~ 9069867 (+)
G214990 NA non-coding upstream 277524 8981914 ~ 8986115 (+)
G214988 NA non-coding upstream 283231 8979328 ~ 8980408 (+)
G214986 NA non-coding upstream 284859 8978409 ~ 8978780 (+)
G214947 NA non-coding upstream 382029 8878358 ~ 8881610 (+)
G215094 NA non-coding downstream 172978 9466620 ~ 9468399 (+)
G215102 NA non-coding downstream 187673 9481315 ~ 9481538 (+)
G215103 NA non-coding downstream 188030 9481672 ~ 9482581 (+)
G215197 NA non-coding downstream 401275 9694917 ~ 9695273 (+)
G215199 NA non-coding downstream 466646 9760288 ~ 9762248 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other upstream 233041 8958299 ~ 9030598 (+)
G214773 NA other upstream 1152314 8110948 ~ 8111325 (+)
LOC103021346 LOC108412479 other upstream 1386521 7856162 ~ 7877118 (+)
pold4 NA other upstream 1450603 7810978 ~ 7813036 (+)
LOC111196031 NA other upstream 2854571 6399076 ~ 6409068 (+)
sprn sprn other downstream 1281853 10575495 ~ 10583088 (+)
G215513 polr1b other downstream 1653437 10947079 ~ 10948287 (+)
cpeb3 cpeb3,LOC106604870 other downstream 1832058 11125700 ~ 11195423 (+)
LOC111195936 NA other downstream 2316676 11610318 ~ 11613123 (+)
G215834 NA other downstream 2911859 12205501 ~ 12206164 (+)

Expression


Co-expression Network