supv3l1 (supv3l1,LOC107725491,LOC106612443,LOC107601833,LOC107666535)


Basic Information

Item Value
gene id supv3l1
gene name supv3l1,LOC107725491,LOC106612443,LOC107601833,LOC107666535
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 9483598 ~ 9494529 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256102.3
ACATACTCAGCCACCTACATCTGCGGGTCTTCTCCCCCACGTGTCCTCTGGTCCAGGCTGTAGTGGATCATGACCGAcctcagtgtttctgtgttcaCCAGTAGCATGGGTGCTATACactgagggatctgtacctgcaCCACACAGCCTGCTGCCCCCGGAGCGTAGCTCCTCTCCCCGGCGTCATGATGGCCCTGAACCGCTGTGCTAGCCTGCTGCGCCGCCGGTCCTGCTCTCTGTTCCGCCGccgcgctgctgctgctcctgctcccAGCTCCGGCAGCAGTGGCGTGACTCTGGGCTTCACCCCACCGCTGAGTCGCTCCACCTCGGACAGGACGCCCAGAATCCCGGACACTTCTCTGTTCGTGCCGGTGGCTGTAAAGAGCAACGGGGACGGAGCGGTGGGAGCAGAGCTAACAAAGCCTCTGGAAAAagGTGAACTTCTGAAGGTCCTAAATAAATTTTACAAAaggaaggagatgcagaagcttGCTGCTGACCAGGGGTTTGATGCTCGACTTTTCCACCAAGCCTTCGTCAGTTTTAGGAAGTTTGTCCTGGAGATGAATGCGCTTGATGCCGATCTGCACATCATTCTCAGTGATATCTGCAATGGAGCAGGCCATGTAGATGATATTTTCCCCTACTTCATGAGGCATGCCAAGCAGATCTTTCCCATGCTAGACTGTATGGATGACTTGCGCAAAATAAGCGATTTGCGTGTTCCAGTTAACTGGTACCCAGATGCCAGGGCTATTCAGCGGAAGATTGTTTTCCATGCAGGTCCCACCAACAGTGGTAAAACTTATCACGCCATTCAGAGATACCTGGAAGCCAAGTCTGGAGTTTACTGTGGTCCTCTTAAGCTGCTGGCCCACGAGATCTTtgagaaaagtaacactgcaGGTGTACCATGTGATCTGGTGACAGGAGAAGAGAGAACCTTTGTGGATCCAGAGGGGAAGCAGTCTAGTCATGTTGCCTGTACCATTGAGATGTGCAGTGTAACCACTCCATATGAGGTAGCGGTAATAGATGAGATTCAGATGATCAAAGATCCCTCCAGAGGATGGGCCTGGACTAGAGCTCTTTTGGGTTTGTGTGCAGAGGAGATCCATGTGTGTGGTGAAGCTGCAGCCATTAACTTTATCACTGAGCTCATGTACACTACTGGTGAGGAGGTGGAGGTCCATAACTACACAAGGCTGACTCCATTCTCCATCTCGGATAAGGCAGTGGAGAATTTGGATAACCTGGAGCCTGGTGACTGCATTGTGTGTTTTAGCAAGAACGACATCTACTCTGTGAGTAGGCAGATCGAGATCCGTGGATTGGAATGTGCCGTTATATACGGAAGCCTTCCCCCTGGCACAAAGCTGGCTCAAGCGAAAAAGTTCAATGACCCAGATGACCACTGTAAGATCCTCGTGGCTACAGATGCGATTGGAATGGGTTTGAACTTGAGCATCAGGAGGATAATCTTTAACTCTCTGGTGAAGCCCAATGTGAatgagaaaggagagaaagagatgctTCCTCTCTCCACCTCCCAGGCTCTTCAGATTGCAGGACGAGCAGGACGCTTCAGTTCTGTGTTTAAGGAGGGTATGGTGACCACTATGCATAGGGAAGACTTACCTGTGCTGAAGGAAATCCTGAGCAGACCTGTGGATCCTGTGGAGACAGCAGGGCTGCACCCCACAGCAGAGCAGATCGAGATGTTTGCATATCACCTTCCTGAGGCCACGCTCTCCAATCTCCTCGATATATTTGTAAGTCTCTCTCAAGTGGATGGCCTTTACTTTGTCTGCAACATCGATGACTTCAAATTCCTGGCAGACATGATTCAGCACATTCCTCTCCACCTGCGCTCTCGCTACGTCTTCTGCACCGCCCCCATCAACAAGAAACAGCCATTCGTCTGCACATCCTTTCTAAAGTTTGCCAGACAGTTTAGCAGAGATGAGCCACTGACATTTGACTGGGTTTGTCGGCACATCAGCTGGCCCCTCACCCCCCCAAAGAACCTCAAAGACCTGGTCCATCTAGAGGCTGCCCATGACGTACTGGATCTTTACCTCTGGCTCAGCTATCGGTTCATGGACATGTTTCCGGATGCTAACCTCATCCGAGAGATCCAGCAGGAGCTGGATGGTATAATCCAGGTTGGCGTGCGGAACATCACACGACTTATTCGGGCCACAGAGGCCCAGGCTCCCAGCCCAGCCCCTAATTCCAAAACTCCTGGCCCGAAGCCCCAGTCACCCTCACTCAGAGGAGCTCGGGTCTCAAGAGCCCAGACCAGCAAGGAGGAGAAGGACAGGACTGTGAACACCTCGCTGAGCTCACGCCTGTTGCAGGAAGGACTGCTTACACCAGAGCTCCTGCAGCAGCTGCAGAAAGAGTGGTCTAAAGACAACAACTACAGTGCAAGTTTTAGAAAAGGAACTGCAACCAAACTGAAGAAAAATAAGTGACACAGACTGACATTAAATGTTTGTGCAGGCTCCTATTTAACTAGTACATAGTGTCCTGATGTGGACCTTTTTTTGAACTGATATGTGATTTTGTTTCTGGGAAGCTACAGACTTTGGGGGAAATGTCAGGAGAGTTGGAGCATCCATGGTTCagaataaaacagtttttattggtttcaaatgaaaatgttaaattGAGGCTGATTACACAGTGGCTGATTTTAAATGTAAGCAATATGCTTACACTAAACTTGTTTGCTTGGTCATAGTTCAGGATTCAGCCATTTTTGatggttatttttgtattttatatcaaATTAGTCTATGTAAAAGAGTTTAGAAGATTTTCCTTCCATGTAACATGCATTTATGATAGGAACTGTGTACCATGTGACTATCCTTCGTGTAATTAAAACCCAGATATGTTCTTCCTTCTCAAAAAGAGGGAATCTCATAAACTCTAATTCTAGACTATAGTACAGAGGAATTTCTCACATGTGCCTAAATGCAgagtttaaagcagcagtatgaagtatttttactttaaaataaccaCTTCCTAATCTGTTGATCTGCCACTGGCCTGTAATGGGGAGAGTAATGCCACCTTCATTGCTACTCGGGACTCAGCATGCCAGAAAATATAGGACTATATAATATTAGTGAGGTAATGAGTAATATTTGGGTAACATACAGTAATGTAACTTTATTGCAGCAATCCAcatgtttctttaatttcatATACTGTATCTCAGTAAAGttggataaaaaaaagtgtgtccTTCCCCCTGAGCAAAAAATGATAGTTCTcccataatgctgctttaataatgtttaaaggccaatttattatttaaaagctggccaaattgtgttttttaaccGATCTGATGAGATGTCCACACTGTTATTTGCAAgtgatcagattggatttgtTGCTCCGCGTGAAGTTctataattgtttgttttttgatgaTATAGAAAAATGGCTAGAGCATCTAAACTGAGACAcatctgtacaaatctgattGTCGTCACATTTCAGACCACCTCCAAATATGTTGGAtctgctttaatttaattaatttattttttgtttgccaCAAATCAGATTTGGAATGACATTCTGAACACAGCCTTTTTATGCATCCATAagtagtgtaaaaaaatatatatatatattaatgatattaatgaccataaaatgtattaagaaaaaaaaaagatctttaatAACTaacaatatggtaaaataatgttgatttttgagttttcacaTTGCATTCATCACTATGTTTTGGCACAGAGACAACattgcatatatttattttttatatactaaaCCATCTCTTTGTAATAAAACCATCAGTGGTCAGAAAATACTGATGATATCCATGAAACACTGGAGCTGGATAATGAGTGTCCTGtgctttagtgtgtgtttttttatgtggtgTGGAAGGAACAGTAGGTCAGGCTGAGCAGAGGCCTCCTGATGTGGCTTAACACGGACGTGATTTAGAACATCATCTTCTGTTTTGTGTTTGCTGATCTTACCGTTTAGTCTGTGACTGTCACCATGGCCACTGCAGAAATCATGCTGATGAAAGCAAGCAACTTCACACACTGTGATCTTACAGTTAAATCACTGGTAAAAGTTTAACAATGTCTATGATATcgattaatgaataaaatatattttaaataaa

Function

symbol description
supv3l1 Predicted to enable helicase activity and nucleic acid binding activity. Acts upstream of or within liver development. Predicted to be located in mitochondrial matrix and nucleus. Predicted to be part of mitochondrial degradosome. Orthologous to human SUPV3L1 (Suv3 like RNA helicase).

NR:

description
ATP-dependent RNA helicase SUPV3L1, mitochondrial

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0070827 chromatin maintenance biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0070584 mitochondrion morphogenesis biological_process
GO:0000958 mitochondrial mRNA catabolic process biological_process
GO:0000962 positive regulation of mitochondrial RNA catabolic process biological_process
GO:0000965 mitochondrial RNA 3'-end processing biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0001889 liver development biological_process
GO:0035945 mitochondrial ncRNA surveillance biological_process
GO:0035946 mitochondrial mRNA surveillance biological_process
GO:0030307 positive regulation of cell growth biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0005634 nucleus cellular_component
GO:0042645 mitochondrial nucleoid cellular_component
GO:0045025 mitochondrial degradosome cellular_component
GO:0034458 3'-5' RNA helicase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function
GO:0003725 double-stranded RNA binding molecular_function

KEGG:

id description
K17675 SUPV3L1, SUV3; ATP-dependent RNA helicase SUPV3L1/SUV3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256102.3 True 4189 mRNA 0.44 15 9483598 9494529

Neighbor

gene id symbol gene type direction distance location
vps26a vps26a,LOC107666532 coding upstream 3053 9469084 ~ 9480545 (+)
srgn srgn coding upstream 17492 9461330 ~ 9466106 (+)
kif1bp kif1bp,LOC107743600 coding upstream 42684 9432604 ~ 9440914 (+)
LOC103044072 LOC108443735,LOC108263510 coding upstream 189956 9263639 ~ 9293642 (+)
LOC103042822 si:ch211-120p12.3,LOC108434955,LOC108263591,LOC103372805,LOC107375814,LOC107676554,LOC107666507,LOC107552954 coding upstream 543053 8920468 ~ 8940545 (+)
LOC103047009 hkdc1,LOC103047009,LOC106612435,LOC107676583 coding downstream 2305 9496834 ~ 9515939 (+)
hk1 hk1,LOC107676584 coding downstream 30290 9524819 ~ 9542971 (+)
tspan15 NA coding downstream 71419 9565948 ~ 9614642 (+)
cfap43 NA coding downstream 137862 9632391 ~ 9653852 (+)
rufy2 rufy2,LOC107676589,LOC107743555,LOC107725492,LOC107563060 coding downstream 165971 9660500 ~ 9679057 (+)
G215103 NA non-coding upstream 1017 9481672 ~ 9482581 (+)
G215102 NA non-coding upstream 2060 9481315 ~ 9481538 (+)
G215094 NA non-coding upstream 15199 9466620 ~ 9468399 (+)
G215039 NA non-coding upstream 173425 9288076 ~ 9310173 (+)
G215011 NA non-coding upstream 413731 9068995 ~ 9069867 (+)
G215197 NA non-coding downstream 200388 9694917 ~ 9695273 (+)
G215199 NA non-coding downstream 265759 9760288 ~ 9762248 (+)
G215215 fam35a non-coding downstream 292623 9787152 ~ 9788616 (+)
G215224 LOC107601818 non-coding downstream 324735 9819264 ~ 9890322 (+)
G215236 bmpr1aa,LOC108438195,LOC107666410,LOC107696892 non-coding downstream 396293 9890822 ~ 9891888 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other upstream 453000 8958299 ~ 9030598 (+)
G214773 NA other upstream 1372273 8110948 ~ 8111325 (+)
LOC103021346 LOC108412479 other upstream 1606480 7856162 ~ 7877118 (+)
pold4 NA other upstream 1670562 7810978 ~ 7813036 (+)
LOC111196031 NA other upstream 3074530 6399076 ~ 6409068 (+)
sprn sprn other downstream 1080966 10575495 ~ 10583088 (+)
G215513 polr1b other downstream 1452550 10947079 ~ 10948287 (+)
cpeb3 cpeb3,LOC106604870 other downstream 1631171 11125700 ~ 11195423 (+)
LOC111195936 NA other downstream 2115789 11610318 ~ 11613123 (+)
G215834 NA other downstream 2710972 12205501 ~ 12206164 (+)

Expression


Co-expression Network