LOC103047009 (hkdc1,LOC103047009,LOC106612435,LOC107676583)


Basic Information

Item Value
gene id LOC103047009
gene name hkdc1,LOC103047009,LOC106612435,LOC107676583
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 9496834 ~ 9515939 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256103.3
GAACAAGGGCTTAACTCTCTCACAGGAAAAGCAGCAGGAGAAAACTTTCACAACACACAGAGGAGCTGGGATTAGGAGGAGAACACCTCTCAGCTCAGTGGAGTACTGGGGAAAGCTAGGAACAGCTGATGTATGAGGTTTCCTTTTTTTACTCAAGtttatttaagtaagtaaagcaCCTGTGTGATTTGTAGACGCTCCAAGAGGAAGTCAAGATGTTTGCTGTGCACCTGCTCTCCTTTTACTTCACCAAGCTGCAGGAGGATCAGATCAAAAAGGTGGACCGCTTCCTGTATGCCATGCGTCTCTCGGACGAACAGCTTTTGGAAATTTCACATCGGTTCAGAGATGAGATGGAGAAAGGTCTGTCACGAGAAAGTAATGCTGCAGCAGCCCTGAAAATGCTGCCCACACATGTGTTCTCCACTCCAGATGGCTCAGAGAAGGGTGAGTTCCTGGCGCTGGATCTCGGTGGTTCTAAGTTCAAAGTGCTCCAGGTGAAGGTATCTGAAGATGGGAACAGGAAGGTGCAGATGGAAAGTGAGATATTTCCAATCCCTGAGGAGGTTATCAATGGCAGAGGAACAGATCTTTTTGATCATGTGGCCGATTCTTTAAAAAACTTCATGCAGAAGAATAACATCAACCAGAAGAAGAAACCTCTGGGCTTTACCTTCTCTTTCCCTTGTCTCCAGTCTAAACTAGATGAGGGTGTGTTACTCTCATGGTCAAAGAACTACAAGGCCAGAGGGGTCCAAGGCACCAATGTTGTACAGGCATTGAGGCAAGCCATCAACAAAACTGGGGGGATTGATGTGGATGTACTGGCACTTGTCAATGACACGGTAGGCACCATGATGACCTGTGGATACGATGACCAGCACTGTGAGGTTGGAGTCATCATAGGTACAGGTACTAATGCGTGCTATATGGAGGAGCTGAGACACATTGACCTGGTGGAAGGAGACGAGGGCAGGATGTGTATCAACACAGAGTGGGGAGCTTTCGGAGACGATGGGGCACTTCATGATTTTATCACGGGTTTTGACAGTGAAATCGATGCAGCATCCATCAACCCAGGAAAACAGCTGTTTGAGAAGATGGTGAGTGGGATGTATATGGGAGAGCTGGTGAGGCTCATTCTTCTGAAGATGGCAAAGCGAGGATTGCTCTTTAAGGGCAGAGTCTCAGATGCTCTTCGCACCAAGGGAAAATTTCAGACCCAGCATGTCAGCATGATAGAAGAgTACAAAGATGGTTTAAGGAACACCAGGGAAATCCTCACAGAACTGGGCCTCACTCCCACCGAGGATGACTGTATTGCAGTGCAGCATGTCTGCACCATTGTGTCCTTCAGGTCGGCTAACCTGTGTGCTGCTGCTCTGGCTGCTATTCTCACCCGCATCCGAGAGAACAAGAAGCTGAAGAGTCTGAGAACTACAGTTGGAATGGATGGGACAGTCTACAGAACTCACCCTCAGTATTCCAAGAGACTCCATAAGGTGGTCCGACGCCTGGTGCCTGAATGTCATGTTCGCTTCGTGCTGTCGGAGAGCGGCAGTGGGAAGGGGGCAGCTATGGTGACAGCGGTGGCACAGCGtagagcttcacagcgtgaagaaatCAACGACACACTGGCAGACTTCACACTCAGCTCCACCCAGCTCCAGCAGGTGAAGGAGAAGATGCGGGTGGAGTTGGAGCGTGGCCTTAGGAAGGACTCTCATGATTCTGCATCAGTCAAAATGCTGCCTTCTTATGTGTACAGGACCCCAGATGGTACAGAGAGAGGAAAATTCCTTGCTTTGGATCTGGGTGGGACTAATTTCCGAGTGCTGGTGGTCAAGATCCGCAGTGGAATACGCAAATCCGTCCGCATGTACAACAAGATCTACGCCATCCCCCTGGAGATCATGCAGGGCACTGGAGAAGAGcTGTTTGATCACATAGTGCAGTGTATCTCAGATTTCCTGGACTATATGGGAATGAAGAACACGCGGCTGCCACTTGGCTTCACCTTCTCTTTTCCATGCAGTCAGACTGGAATAGATAAGGGAAGTTTGGTGAGCTGGACGAAGGGCTTCAAAGCCACTGAGTGTGAGGGGCATGACGTGGTGGATATGCTCAGGGAGGCCATCAAGAGACGAAACGAATTTGATCTTGATATTGTTGCTGTGGTGAATGACACAGTTGGTACGATGATGACATGTGCTTATGAAGACCCTAGATGTGAAATTGGACTAATTGCTGGAACTGGCAGTAACGTGTGCTACATGGAGGACATGAAGAATGTTGAAGTAGTGGAAGGGGACGAGGGGCAGATGTGCATCAACACAGAATGGGGCGGTTTTGGGGACAATGACAACATCGAGGACATCCGGACCAGGTTTGATCATGAGGTGGATGAAGGGTCCCTAAATGTGGGGAAGCAAAGGTTTGAGAAGATGACCAGTGGGATGTACCTGGGGGAGATTGTGAGGCAGATTCTCATAGATCTAACCAAGAGGGGTCTTTTGTTCCGTGGCCGCATTACAGAGCCACTGAAGACAAGAGGCATCTTTGAGACCAAGTTCCTCTCACAGATCGAAAGTGACCGCCTGGCTCTACTGCAAGTGAGGTCCATTCTGCAGCACTTGGGTCTGGACAGCACGTGTGATGACAGTATTATAGTAAAGGAGGTGTGTGGGGCAGTGTCCCGCCGAGCCGCACAGCTCTGTGGAGCGGGAATGGCTGCTATTGTGGACAAAATACGGGAGAACCGAGGACTGGACAATCTGGACATCACTGTGGGGGTGGACGGCACGCTCTACAAACTCCATCCACACTTCTCCAGAATCCTAAAGGAGACCGTGAAGGAGCTTGCCCCCCAGTGTGAGGTGGAGTTTATCCTGTCTGAAGATGGCAGTGGGAAAGGAGCAGCTCTTATCACAGCTGTGGCTCGACAGCATTACAGAGAGACATAAGTATTGCTGGACTGAATAAACATTGCAGTGAAGCTGGATTATGGGTGGGGAGGGGATTTGTTTTTCTAaataatattctatatttttgcCAAATCTGTAAAACATGCCATCGACTGAGTAGCCTCATACACACCTTAACAAAGCTAAAATACGATCTATAGTAAAgttgttaaatagttaaatgttATGCTGAATGCTGTAAGTACggaaatgtgttttgtgtttttttgttgttgttgttttaatatGAGCAAAACCACTTAGCACATAGCAACTGGATGAAATTACAAACCATTTAAGCTGTGCATCTGTAGCCCTTCTTCATTTCCTTCAGAAAATGCACTTCTCTAGTTTATTGACTAGAATTTGATTAATTCCCTAATCACAGTGCCACCATCCCATCTGTGCAACAAGCAGTTTGTCCTTTTAAGGTTTAATGGACCAACAGAAACCACATagcccaccacacacacacacacttcctgcaGTAGTCTGCAATCTCTCATAAAGATAGCACGcatcatatgaacattaaaaaaacaagagctGAACTGCTACTGAACTGATGCCACATATCAGTGATGATGCATAAAATACTGGCTCACATACTGTAAACTACCTGCAACAAATCTGCTCTGAAAgagaacacactcacactctggtaTTTGGCACCATAATTGCAAACAACATAACCAAATAGCAACAGATCCTTTCAAAGTCTTGTAGGTTGTAAGGGGGGAGGGGGTGCTTCTCTGGATCACATCATTGAGCCTTagcagagaaaaacacaataagacctgcctgatgtttttaaaatgctctGATCCAGTCATTTAACAGTCACAATTTTGCTTTTGTCAAAGTGGctctataaaaaattaaaatttctaGCAAAATAATGCTCAGCCCCACACAGCAAGGGATTCCCAGGGTTATCTCAGCCAGATTAAAACACTTATTTGGCCTGCTGATTCAGCAGATTTTTTACAAATTGAGCATTTAAGGGACCAGCTGGGACACCACATATGGCAACCTACAAGTTAACAGgttctacaggcccagctgaaACATCTGTTGGCAAATGTGCTGCAGCCTTTGACTGTACAGTTTTCATCaacaaatcaattaaaaatacttttactccAATACTGTAATCAATTATATCACATATATGAAACTTTTTTTCATTCTGCTCAGCTCATTCTGggtgtataaaatgtatttttttggtaaatgagTGTATATAATCTACGTTTTTCCCTTGGTACttatgttatggctgattggtatATATTCTTTGGTATATCTTTTTTGGTAAATAGAATGTTTTCTAAAATGTTACAGTTAAAAGTTCTTAGAACACTCAATCTGCCAATGTTTCTACATAttcttagaacattttaattcaatgttttaaatgtggtaACATTGCTGCAACATCACTTCTGTCATTTCTTTTAGCGTTTCCATAATGTTGGTATACTTCTAGCTGGGAAGGatatgtgagaaacattctaaaaaaTAGTGTGATGCAAACCCTTATTATGCCACACATTTCAAAACATAGTTAGACAATTTTATAAGTCTCTATTTGCTGGGTTATGTGTGATTTGTCCAGTGTATCAGTCCTTTTCCCACAGTCTCTAAAATACTTgctaaacatactgtatatatgtatgtatgttaagCAGCCTCAGGCTGGTTTGTGCAGGAGGGAGGTTTGTTAAGACCAGCTGCCTCTTGCTTAACCATGTTTCGTGTCAGCTCATCAGATGAACAGCTGACCTCACTATTGAATGTCACTCACCATCTATAAGTGTAATTGCCCCTTGCTGGCCTCCTCCCCCTCCCTTTGTCTGCTGTGAGCGAGCAGGTTTGCATGGACAGGCAGAGAGAATAGCATGGACAGGCCGAGCTGGGGGGGAGGTGTCCGCTGGAATGTCATGAGTGCATTTAGACTAGCCCTGTAGCAAGCTGTGTGTGAGCAGCAAGAAGAGCAATGCCTAGACAAACATTGCAGTGCAAACTGAGGACTTGAGCATATGAGGAAGTGCACTTTGTGTGTGAACTTCACTGCACTGTTTAAAATGGAAGAAGTTTCAGTCTGTGAATACATGTTATTTGCACAACACATAAAATGACATGGTAATATATGTATTTCCTAtgtataatacactatatgttcaaataTTTGTGGGTCTAATGTGCTTCTATTGAATACTTTTAGTTACCATGAGTTGCACTCTTTGCAAGATTTActgcagcagataaacataaaccaaTAAGCACCATGCATAATGccagaatgcaatcaaatcctcacaacaatgctCTAACATCTAGCAAAGTCTTCCAGTACAGTCAGTAACTTCAACAAAAGCATCATCCAAAATTGTATTACCCTTGGTTTTAGAAGACACAATAAATGCAcaggtgtcccattactttGGTCCATCTGGTGTATAATGTAAGACAGGGTTCCCTAGGACTGATTCATGTTTGAAATCCTATGTATTTGATACTACCACACCAGCATTGTcacattattatttactgtaaatgtattcATTGTAATGGggtttcttctaaaataaattatatgatTCTA

Function

symbol description
hkdc1 Predicted to enable fructokinase activity; glucokinase activity; and mannokinase activity. Predicted to be involved in cellular glucose homeostasis; glucose 6-phosphate metabolic process; and glycolytic process. Predicted to act upstream of or within carbohydrate metabolic process and phosphorylation. Predicted to be active in cytosol and mitochondrion. Is expressed in several structures, including digestive system; endoderm; heart; pronephric duct; and yolk syncytial layer. Orthologous to human HKDC1 (hexokinase domain containing 1).

NR:

description
putative hexokinase HKDC1

GO:

id name namespace
GO:0046835 carbohydrate phosphorylation biological_process
GO:0051156 glucose 6-phosphate metabolic process biological_process
GO:0006096 glycolytic process biological_process
GO:0001678 cellular glucose homeostasis biological_process
GO:0005829 cytosol cellular_component
GO:0005524 ATP binding molecular_function
GO:0008865 fructokinase activity molecular_function
GO:0004340 glucokinase activity molecular_function
GO:0019158 mannokinase activity molecular_function

KEGG:

id description
K00844 HK; hexokinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256103.3 True 5571 mRNA 0.44 18 9496834 9515939

Neighbor

gene id symbol gene type direction distance location
supv3l1 supv3l1,LOC107725491,LOC106612443,LOC107601833,LOC107666535 coding upstream 2305 9483598 ~ 9494529 (+)
vps26a vps26a,LOC107666532 coding upstream 16289 9469084 ~ 9480545 (+)
srgn srgn coding upstream 30728 9461330 ~ 9466106 (+)
kif1bp kif1bp,LOC107743600 coding upstream 55920 9432604 ~ 9440914 (+)
LOC103044072 LOC108443735,LOC108263510 coding upstream 203192 9263639 ~ 9293642 (+)
hk1 hk1,LOC107676584 coding downstream 8880 9524819 ~ 9542971 (+)
tspan15 NA coding downstream 50009 9565948 ~ 9614642 (+)
cfap43 NA coding downstream 116452 9632391 ~ 9653852 (+)
rufy2 rufy2,LOC107676589,LOC107743555,LOC107725492,LOC107563060 coding downstream 144561 9660500 ~ 9679057 (+)
LOC103028294 LOC108438200 coding downstream 180088 9696027 ~ 9759882 (+)
G215103 NA non-coding upstream 14253 9481672 ~ 9482581 (+)
G215102 NA non-coding upstream 15296 9481315 ~ 9481538 (+)
G215094 NA non-coding upstream 28435 9466620 ~ 9468399 (+)
G215039 NA non-coding upstream 186661 9288076 ~ 9310173 (+)
G215011 NA non-coding upstream 426967 9068995 ~ 9069867 (+)
G215197 NA non-coding downstream 178978 9694917 ~ 9695273 (+)
G215199 NA non-coding downstream 244349 9760288 ~ 9762248 (+)
G215215 fam35a non-coding downstream 271213 9787152 ~ 9788616 (+)
G215224 LOC107601818 non-coding downstream 303325 9819264 ~ 9890322 (+)
G215236 bmpr1aa,LOC108438195,LOC107666410,LOC107696892 non-coding downstream 374883 9890822 ~ 9891888 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other upstream 466236 8958299 ~ 9030598 (+)
G214773 NA other upstream 1385509 8110948 ~ 8111325 (+)
LOC103021346 LOC108412479 other upstream 1619716 7856162 ~ 7877118 (+)
pold4 NA other upstream 1683798 7810978 ~ 7813036 (+)
LOC111196031 NA other upstream 3087766 6399076 ~ 6409068 (+)
sprn sprn other downstream 1059556 10575495 ~ 10583088 (+)
G215513 polr1b other downstream 1431140 10947079 ~ 10948287 (+)
cpeb3 cpeb3,LOC106604870 other downstream 1609761 11125700 ~ 11195423 (+)
LOC111195936 NA other downstream 2094379 11610318 ~ 11613123 (+)
G215834 NA other downstream 2689562 12205501 ~ 12206164 (+)

Expression


Co-expression Network