LOC103022802


Basic Information

Item Value
gene id LOC103022802
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 7748969 ~ 7757553 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256111.3
GAAAAGAGTAGCGACCTGAGGAGCAGACCTGGCAGATTACAAATAGAGaacaagaaagcctgcaaataaaaatgaagaagagagaaaattaGCTGAAATCTGTCAGAAAAGAAACAGAATTCTAACATGAGAAACAGAAAAGAAGAATGAAAGTAGAAGCGTGACAGAGGAAAAACGACAGCAAAGATGACTGAAGGAAAACCAATATCCAAAAGTTCTTCTGTGCTTCATTCCATGCTAATCAAACTGAAGGCTAACGAGAAGGTCCATTCTTCTAGCCGACAAACATCCAAATTCTACACCTACACAAATGACACAGATCAGAATGAAGGTGAAGATGCAGCCTCACCCAAATTGGAGTCAACTTTTGAAGAACAAAATAATTTGGACACCACGGCCAAGGCTGATAGTGCTGAGAGCACTGACAGAAATGCTGCCGATGAAGATTCAGAAACATTTACTCTGGAATCTCAACTCCACAAATCTTCTCCAGTCATCTATTCCAGAGTGGAGAGAAGGAAACGTGCTTCTGACCTTCTGACAAAAGAGGTGGAAGAAGATCCATCGTCCAATAAGAGTCAACCTGAGTTGGAGAAAGTCACAGAGGAGTCAGAGCTAAAGGAGGACATCTCTGGATCCTCTTCTCCCTTAAATGAGTCCCAACCCATCAAACGCCTTGCTTCCTTTAACAGGGAAAGAAAAACTGAGGACCCAGAACCATCAAACAAGGACATTCATGCATCTAAGCAAAGTTTGGGTACTATCTCTAGCAAGGCTTTAGAAAATCCAAACTGCAAGGAAACACAATCTGCTTCTGATCCAGTAAAGATGAGCAAAAGAAATAACAGAACTTTGTCAGACCCAGGCAGACACTACAGGGCAGATATGGACCAACTCACCACAGATCTAGAACAAGTGAATTCGACTACACAACAGATGACTGTGATAAAGGCAGAGTCACCAGGTACACCAGAGACAACAGAGGGTGACAGCTTAaaggtgaagaagaagaaaaagaacattgcACAAAAACTGAAAGCAAAGTTTAGGGAGAAAAGCAGTCATGACAAAAGCAGAGGCACCAGTAGCTTTTACTGTGATGAAGACATAACACAATCTGATATTTCAATAGAGGAAGCAGAGTCACCAACTCCTAAAGAGGAAAACTCCACAAAAATGAAGCTCATGTTAAACAGGACATGTACATTACGAGACTTCAAACTCAACTTGGAGCCCATCAGCTTGATGGATGAACTCTTTACAGGAGATGAATGGACGAAGTTCCTTCCtgttaaagaaaaacagatCCAAGAAGAAACcactgaccaatcacagacagAGAGCTCCTGTCAGTCAAATGAAACCCAGTCTGACAATTCAGTCATAATACAGAACCATCAACCATCAGAAGACAAAGATCAAAGTCAATCAGAGGCGGATCAGACTAGTGTTAGTGATAGAGCTCTGGATGAGGTCAGAGAGGTGCAGCCAAGACCAACTCCAAACAAACCCATTTACGCTGTTCATAAATCACTGATCTCTAACGGTGCagtgaaacaaaagaaatgtgAATTACCACAATATGAACATTCTACTGACGATGACGTTTATGACTTTGTGGAGGTATATATGCTTCCTAAAAACAACGCAGTGGTAAAAGATCTGCCAGACATTGAGTCAATAGGAGTATTAGACAGTTCTGCACTGAAGAGTCGAATCAACCTGAACAAAAATAGAAAGCATCGACcaccaaaaaagaagaaaaaggAGACATCAGACATGAGACGTACTTCCACATTCTACACACCCGTCGTGGACAATTCTACTAATATGGACGTTCCTCGTCTTCGAAGTTATTCTACATCCTCATCCTACCCTCCACGAAAGACTGTCACCACTTCACCTTCTTCCTCCTATAAAAACTCTGTGTTTTATCCCGTCCTAAAACCAACACTGTCCTGTGACACTGATGtttctccagcagctgatgatgAGAAGCAGAAAGCCAAAGAGAAATCTGAGAAACCAAAGCTGTGGAAGGTGAAGAATTAAATTAATGAAGAAGACAGCTGCTTTACCTCAAACCTGGAAATGAAGCCCATCACTTTTGAtctgtacatttaaatatagaCATAGAACTGTCACCTGCATATAAGACTAAGACACAGTTTATAAGATaactaaataaactgaagcaagTGCTCTGATCATttaca
>XM_007256112.3
GAAAAGAGTAGCGACCTGAGGAGCAGACCTGGCAGATTACAAATAGAGaacaagaaagcctgcaaataaaaatgaagaagagagaaaattaGCTGAAATCTGTCAGAAAAGAAACAGAATTCTAACATGAGAAACAGAAAAGAAGAATGAAAGTAGAAGCGTGACAGAGGAAAAACGACAGCAAAGATGACTGAAGGAAAACCAATATCCAAAAGTTCTTCTGTGCTTCATTCCATGCTAATCAAACTGAAGGCTAACGAGAAGGTCCATTCTTCTAGCCGACAAACATCCAAATTCTACACCTACACAAATGACACAGATCAGAATGAAGGTGAAGATGCAGCCTCACCCAAATTGGAGTCAACTTTTGAAGAACAAAATAATTTGGACACCACGGCCAAGGCTGATAGTGCTGAGAGCACTGACAGAAATGCTGCCGATGAAGATTCAGAAACATTTACTCTGGAATCTCAACTCCACAAATCTTCTCCAGTCATCTATTCCAGAGTGGAGAGAAGGAAACGTGCTTCTGACCTTCTGACAAAAGAGGTGGAAGAAGATCCATCGTCCAATAAGAGTCAACCTGAGTTGGAGAAAGTCACAGAGGAGTCAGAGCTAAAGGAGGACATCTCTGGATCCTCTTCTCCCTTAAATGAGTCCCAACCCATCAAACGCCTTGCTTCCTTTAACAGGGAAAGAAAAACTGAGGACCCAGAACCATCAAACAAGGACATTCATGCATCTAAGCAAAGTTTGGGTACTATCTCTAGCAAGGCTTTAGAAAATCCAAACTGCAAGGAAACACAATCTGCTTCTGATCCAGTAAAGATGAGCAAAAGAAATAACAGAACTTTGTCAGACCCAGGCAGACACTACAGGGCAGATATGGACCAACTCACCACAGATCTAGAACAAGTGAATTCGACTACACAACAGATGACTGTGATAAAGGCAGAGTCACCAGGTACACCAGAGACAACAGAGGGTGACAGCTTAaaggtgaagaagaagaaaaagaacattgcACAAAAACTGAAAGCAAAGTTTAGGGAGAAAAGCAGTCATGACAAAAGCAGAGGCACCAGTAGCTTTTACTGTGATGAAGACATAACACAATCTGATATTTCAATAGAGGAAGCAGAGTCACCAACTCCTAAAGAGGAAAACTCCACAAAAATGAAGCTCATGTTAAACAGGACATGTACATTACGAGACTTCAAACTCAACTTGGAGCCCATCAGCTTGATGGATGAACTCTTTACAGGAGATGAATGGACGAAGTTCCTTCCtgttaaagaaaaacagatCCAAGAAGAAACcactgaccaatcacagacagAGAGCTCCTGTCAGTCAAATGAAACCCAGTCTGACAATTCAGTCATAATACAGAACCATCAACCATCAGAAGACAAAGATCAAAGTCAATCAGAGGCGGATCAGACTAGTGTTAGTGATAGAGCTCTGGATGAGGTCAGAGAGGTGCAGCCAAGACCAACTCCAAACAAACCCATTTACGCTGTTCATAAATCACTGATCTCTAACGGTGCagtgaaacaaaagaaatgtgAATTACCACAATATGAACATTCTACTGACGATGACGTTTATGACTTTGTGGAGGTATATATGCTTCCTAAAAACAACGCAGTGGTAAAAGATCTGCCAGACATTGAGTCAATAGGAGTATTAGACAGTTCTGCACTGAAGAGTCGAATCAACCTGAACAAAAATAGAAAGCATCGACcaccaaaaaagaagaaaaaggAGACATCAGACATGAGACGTACTTCCACATTCTACACACCCGTCGTGGACAATTCTACTAATATGGACGTTCCTCGTCTTCGAAGTTATTCTACATCCTCATCCTACCCTCCACGAAAGACTGTCACCACTTCACCTTCTTCCTCCTATAAAAACTCTGTGTTTTATCCCGTCCTAAAACCAACACTGTCCTGTGACACTGATGtttctccagcagctgatgatgAGAAGAAAGCCAAAGAGAAATCTGAGAAACCAAAGCTGTGGAAGGTGAAGAATTAAATTAATGAAGAAGACAGCTGCTTTACCTCAAACCTGGAAATGAAGCCCATCACTTTTGAtctgtacatttaaatatagaCATAGAACTGTCACCTGCATATAAGACTAAGACACAGTTTATAAGATaactaaataaactgaagcaagTGCTCTGATCATttaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256111.3 True 2216 mRNA 0.41 7 7748969 7757553
XM_007256112.3 False 2213 mRNA 0.41 7 7748969 7757553

Neighbor

gene id symbol gene type direction distance location
LOC107197796 NA coding upstream 6882 7734675 ~ 7742087 (+)
LOC103023957 tcirg1a,LOC108434797,LOC105908477,LOC106609897,LOC107679885 coding upstream 49665 7682038 ~ 7699304 (+)
LOC103045994 NA coding upstream 164810 7551920 ~ 7584159 (+)
LOC103045679 NA coding upstream 199764 7529580 ~ 7549205 (+)
pkd2 pkd2,LOC107684281,LOC107583176,LOC107706826 coding upstream 267295 7466177 ~ 7481674 (+)
LOC103021660 si:dkey-28b4.8,LOC108434786,LOC107664566,LOC107551445,LOC108262771,LOC107556825 coding downstream 58270 7815823 ~ 7840389 (+)
tmx2 tmx2,LOC108412483,LOC105022872,LOC107664575 coding downstream 125641 7883194 ~ 7892498 (+)
LOC103028482 LOC108434761,LOC105891496,LOC106611657,LOC101069382,LOC108243062,LOC106594846,LOC106604652 coding downstream 263096 8020649 ~ 8029171 (+)
slc43a3 slc43a3 coding downstream 357526 8115079 ~ 8127288 (+)
LOC103029427 LOC108434779 coding downstream 425862 8183415 ~ 8206107 (+)
G214613 NA non-coding upstream 3897 7744372 ~ 7745072 (+)
G214614 NA non-coding upstream 5562 7743200 ~ 7743407 (+)
G214533 LOC108434796 non-coding upstream 43027 7702646 ~ 7705942 (+)
G214502 NA non-coding upstream 97791 7610083 ~ 7651178 (+)
G214493 NA non-coding upstream 100972 7573165 ~ 7647997 (+)
G214618 NA non-coding downstream 2982 7760535 ~ 7760783 (+)
LOC111196001 NA non-coding downstream 18083 7775636 ~ 7776179 (+)
G214638 ssrp1,ssrp1b,LOC107746478 non-coding downstream 38861 7796414 ~ 7800876 (+)
LOC111195953 NA non-coding downstream 83375 7840928 ~ 7845966 (+)
G214670 NA non-coding downstream 92144 7849697 ~ 7850433 (+)
LOC111196031 NA other upstream 1339901 6399076 ~ 6409068 (+)
G214175 NA other upstream 1464601 6283781 ~ 6284368 (+)
G214006 NA other upstream 2227294 5521184 ~ 5521675 (+)
LOC103034491 scoc,LOC103034491,LOC108434805,LOC107674238,LOC108263532,LOC103132857,LOC103463814,LOC106946201 other upstream 2389237 5349167 ~ 5359732 (+)
G213891 NA other upstream 2574873 5173069 ~ 5174096 (+)
pold4 NA other downstream 53425 7810978 ~ 7813036 (+)
LOC103021346 LOC108412479 other downstream 98609 7856162 ~ 7877118 (+)
G214773 NA other downstream 353395 8110948 ~ 8111325 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other downstream 1200746 8958299 ~ 9030598 (+)
sprn sprn other downstream 2817942 10575495 ~ 10583088 (+)

Expression


Co-expression Network