CI01000009_01897343_01919208 (PIKFYVE)


Basic Information

Item Value
gene id CI01000009_01897343_01919208
gene name PIKFYVE
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1897343 ~ 1919516 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_01897343_01919208.mRNA
GGGCAGTGACATGGCTGCCGAAGACAAGGCTTCCTCCTCGTCCTCTGTGATGGACTGGAGCTCTGAGCCGCCACTCTCTCCCACCAGTCCCTCCCATCTAACGCACTTCAAACCCCTGACCCCCGAGCAGGACGAGCCGCCACTGCGCTCCGCTTACAGCTCCTTCGTCAGTCTGTTCCGCTTCAACAAAGAAAAAACAGGTGCAAACATTGCACCAGCAAAAAAGCTTGCTAAGCTTGAGGAAGGACGGCCTCCTTCAGTGACAGAGAAAAGTCAATCGGCTTCATCATCGCCGCAGGGGCCACGGCGCAACTGGTCAAGTCCCTCCCATTCCATACATGGCACTGAAACCCACAGGAAACATTCGGAACTTCTCAGAAGAACATCAACTGCTTCAGAGGGTCGACGGAAATCAGAAGCCCCTCTGGGCAGCCACGATCCCCGAACCGCTGTCCAGCTACGCACAGCCCTCAAAAGACTTAAGGAGATCATGGAGGGGAAAAGTCAGGACAGTGATCTGAAACAGTACTGGATGCCAGACAGTCAGTGTAAAGAGTGCTACGACTGCAATGAGAAATTCACAACCTTCCGACGGCGTCACCATTGTCGACTCTGTGGCCAAATCTTCTGCAGCCGATGCTGCAACCAGGAAATTCCTGGCAAGTTCATGGGCTACACGGCTGGCTCCTTCTGCTCATGGGTTGCGAGTCTGTCTCAGTGCTCATCTTTTCTCCTTTCTCTTTCCATGCATAGAAAAAATTCCATTGGGATGAGGAAGAATCATCAGGAATCCCAGAACAGTGGTCTCAGTTCCAGACTTACAGCAGTCCAAGAGGATATGGGCAAGTCACCGGCCAGGAAGAGGTCAGCTAGTGTGACCAACCTGGCTTTGGACCGTTCCAGCTCATCCATGGTTCCTGCCTACGAGACAGCAGTTAGTCCACAGAACAGCCGGGCCCAATCCAAAACTGACCACAGCGAAGAGGAGCGAAAAATCCTTCTGGATTCTTCTCAACTTAAAGATCTATGGAAGAAAATTTGCCACAACAGTACAGGGATGGAGTTCCAGGACCATCGCTATTGGCTGCGTACTTACCCCAACTGCATTGTTGGTAAAGAGTTGGTCAACTGGCTCTTACGAAATGGCACTATTTCAACTAGGGCTCAGGCCATAGCTATTGGGCAGGCTTTGGTAGATGGACGCTGGCTTGACTGTGTAACCCATCATGATCAGATTTTCCGTGATGAGTATGCCCTCTATCGCCCTCTCCAGAGCACAGAGTTCTCTGAAACCCCCTCTCCAGACAGTGACAGTGTGAATTCTCTGGAGGGACACTCCGAACCGTCATGGTTTAAAGACATCAAGTTTGACGACAGTGACACTGAGCAGCTAGCAGATGAAAATGACTATGTCACACCAAACTCGGCCAGCCCCAGCAAAAGAACATCCGTCAGCAGTTTCCATTCTGCAGTGGACAGTGACTCAGCCGCCTCCATCAACCTAAACATGGAGCAGGACAATGTCAATTTCCACATCAAGAAGCAGGCCAAGTACCCCCATGTGCCTCCTTACCCAGCCGAGCAAAAAAGTATGGAGCCTCATGACCCGTTCACCCCAGAAACCGACATCCATGCACCAATGGAAGTCCTGCTCTCTGAAGATGGAGGTCAGCATATATCCATCAGTGATGCCTTCATAAAAGAGTCTTTGTTTAACCGGAGGGTTGAGGAGAAAGCTAAAGAAATGCTCTTCACTCCTCTTGGCTGGCATCACAGCTCCTTGGACCAGCTGCGGGAAGAGAACGGGGAAAAGAAAGCAATGGAGCGTTTACTGTCTGCTAATCACAGCCACATGATGGCGCTGCTGCAGCAGCTGCTGTACAGCGAATCGCTGTCACTCTCCTGGCGTGACATCATCGTACCTGTGGTGAGGCAGGTGGTGCAGACGGTGCGACCGGATGTGCGCAGCTGTGATGATGACATGGATATCCGTCAGTTTGTCCACATCAAAAAAATGAACCCTTACATCAAAAACCCCAAGATCCTTCTCCTCAAATGCTCCATTGAGTATCTATACAGAGAAGAGACCAAGTTCACCTGCATTGACCCAATTGTGTTGCAGGAGCATGAGTTTCTGAAGAACTATGTTCAGAGGATTGCTGATGTTCGACCAAACCTGGTGTTGGTGGAGAAGACTGTGTCCCGTATTGCTCAGGACATGCTACTGGAGCACGGCATTAGCCTTGTGATTAATGTCAAACCTCAAGTCCTGGACCGCGTGAGTCGAATGACTCAGGGAGATTTAGTCATTTCAATGGATCAGCTCCTTACTAAACCTCGTCTGGGTACCTGCCACAAGTTTTACCTGCATTCCTTCCAGCTGCCAAATGACGAACTGAAGACCCTGATGTTTTTTGAAGGCTGTCCTCCTCAGCTGGGCTGCACTATTAAGCTCCGCGGTGCCTCAGAGTATGAACTGGCACGGGTGAAAGAGATCATTATTTTTATGGTGTGTGTGGCGTACCACTCACAGCTGGAGATCTCTTTCCTCATGGATGAGTTTGCTATGCCTCCCAGCCTGGCTGAGAGTTCCTCCTTCCCTTGTCTGCTGGAAAGCACCACTTTGGAGGAAGAGGACGAGACTGGTGGGGAAAGGGAGAGCCAAGATAATGATGGGTCCACGCTGGGGGATGACAACTTCACGCTTCTTCCAGATGCAGACTTTGAGCCAGGACTTCAGGAGGTTATCAAACTCCACAGTAGAGAGCCTTCCATCTCTGAATCTTCTTATAAAGATGGAGAAAGCCCCAGAATAAAAAACAATGGTTCAGTTGCTTCCTTCTCTGGAGGAGAGGAAGAGATTATGAAGACCTCCACACCCCTTTCCTCCTTCTCTTCCAGCCTTCCCCAGGCGGTGTCACCACCTTTCCTGAATTCAAACCTGAAAGAGATGTCACAGGAAATGAACAAGGGGCCAGGTGAGGAGGAGAAGAACAAAGAGCTGGAGGAGACTCTGGTCCAGCGGGACAGCACAAGCTCTGAGACCTCCCTTCCACCAGCCCGACTCTTCAGGGATCCCTTACAGGATGACACAGATCTGTTTGTGACCGAGCATGTAGCTTCCTCAGATGATCGCCTCAAGTCCATCTCAGCTTTATTTAAACAAGAGCTAAAAGACGTTATCCTGTGCATTTCACCTTTTATTACCTTTCGGGAGCCGTTCTTGCTCACGCGGGCTGGACTGCGCTGTCCTAGCCGGGATTATTTCCCAGAACAGGTTTACCTCTCACCTCTATTAAATAAGGATTCGAAAGAGCTGGACGGACGGCGCAAGAGGCAGCTGCTGAAAGAGTCTGGCCCGAGTTCTGGCAGCCTGACTAACGGTACTGTGTCGCACCAACGGCCCATCCAGATTTTGCCCTGTCACAAACTCACGAGTGCCCGTATAGCAGAGCATTTAGGCAGCAGTCGGGAGCTGGCACGCATGCTGGCTGACTACCGTGCCCAAGGAGGACGCATTCGACAAAAAGAAGGAAATCAATTTCGTGAAGCCCCTCCCACAAAGGCTCCAATAAAGGCAGATAGTGAAGAAGATAAAGGGCCAGGAATGAGTGAAATGACATGGGCTACTAAGTTGGACTGTTTAAATCCAATCAACCATCAGAGGCTCTGTGTGTTGTTCAGTAGCTCATCAGCACAATCTAATAATGCTCCAAACCCCTGCGTCAGTCCATGGATTGTAACAATGGAGTTTTATGGCAAGAATGACTTGACTCTTGGTGTATTTCTGGAGAGATACTGTTTTAGACCCTCTTACCAGTGCCCCAGCATGTACTGTGAGACCCCCATGGTGCACCACATCCGGCGCTTTGTGCACGGTAGCGGCTGTGTCCAGATTGTTCTGAAAGAGCTGGACTCGCCTGTACCCGGATATCAGCACACGATTCTCAACTACTCTTGGTGCCGTATCTGTAAACAGGTGACTCCTGTGGTCCCTTTGTCTAATGACTCCTGGTCCATGTCCTTCGCCAAGTATCTAGAGCTCCGTTTCTATGGTCACCAGTACACCCGCCGGGCCAACGCCGAGCCTTGTGGCCACTCCATCCATAAAGATTATCACCAGTACTTCTCTTACAACCAGATGGTGGCTTCCTTCAGCTACATCCCAGTGAGGCTACTAGAGATCTGTCTGCCTCCTCCGAAGATCATCATCAGGAACCAGGAGCCCTCTAAAGCCAACTTGCAGCAGGATCTCAAAGACTTCTCCCAGAAGGTGGCTCAGGTGTACCTGGCCATAGATGACCGTCTCACCTCTTTAAAAACTGACACTTTCAGCAAGACCAGAGAGGAGAAAATGGAGGACATGTTCGCACAGAAAGACATGGAGGAATCCGAGCTTCGCAACTGGATAGAGAAGCTACAAGTGCGTCTGCAGACCACTGCGATGGACTCACCACAACAACTACAAGCTGTTCAGGAGTCAGTGGTGGTCAAAAAGCAGGGCTTGTGTGAGACCTTGCAGTCTTGGAACAACAGACTTCAGGACTTGTTCCAGCAAGAAAAAGGCAGGAAGCGTCTATCTGTTCCTCCCAGTCCTGGAAGACACAGGCAAGCTACATCAGATGAGGGCAAGTTACCGTCTCCAGCTGAACAAGCTTCAGATGTCATTACAAGCGGGCCATCTTTTCCTGATCAGGACTCTGTCAGCATCCCAGAGGACATGTTTGATGGACACTTACTTGGCTCCAGTGACAGTCAAGTAAAGGAAAAGTCCACCATGAAAACCATCCTGGCCAACCTGTTACCAGGCAACAGCTACAATCCCATCCCTTTCCCTTTTGACCCAGATAAGCACTATTTGATGTATGAGCACGAGAGAGTTCCTATAGCCGTGTGTGAGCGAGAGCCCAGCTCCATCATTGCCTTTGCACTCAGCTGTAAAGAATATAAAACTGCCCTTGAAGAGCTTACAAAGACTACAGCAAAGACCGGAGGTGATGATACATCTCAGGCCATTAGGTACATCAAACACTCATTCCTCTTATTTGCTGTATTTTCTCAGTGTATATTGGTAAAACAGCAAGCTAATTTCTTCTTCTTTTTTGCCATCTATAGTGCTGGAGAGAGCAGAGCAAAGAACAGCCCAGCCAAACCAAGTGACAGCAGCATGTCACAGCTGAACCGCAGCAGTGTCGATGCTGACCCACTCAAGGAGCCTGAAAATGGAGACAAACAGAAGAAGCAGACCGGAAACCCACACATTGAGCTGCAGTTCTCAGACGCAAATGCCAAGTTTTACTGCCGGATCTACTACGCGGAAGAGTTCCATAAAATGCGGGAAGAGATCATGGAGAGCTCGGAGGATGATTTTGTGCGATCCCTCTCCCACTGTGTCAACTGGCAGGCTCGTGGCGGGAAGTCTGGTGCAGTTTTCTATGCCACTGAAGATGATCGGTTTATTTTGAAGCAGATGCCCAGATTAGAGGTCCAGTCTTTCTTAGACTTTGCACCCCACTACTTCACTTACATCACAGGAGCAGTTCAGCAAAAGCGGCCCACAGCACTTGCTAAGATTCTGGGAGTGTACCGTATCGGCTACAAGAACTCTCAGAACAACACAGAGAAGAAACTGGACCTGTTGGTGATGGAAAACCTTTTCTATGGGAGAAAGATGGCACAGGTGTTTGACCTGAAGGGATCCCTGAGGAACAGGAACGTGAAGACGGATCAGGGAAAGGAGAGCTGTGAGGTGGTGCTCCTAGATGAAAATCTCCTGAAACTGGTGCATGACAATCCCCTTTATATTCGCTCCCACTGCAAGGCCATTCTGCGTGCTGCCATCCTCAGTGATGCCCACTTCCTGTCCAGCCACCTCATCATTGATTATTCTTTGCTGGCGGGTCGTGATGATGCCACAGATGAGCTAGTTGTGGGGATCATAGATTATATCCGGACTTTCACATGGGATAAAAAGCTGGAGATGGTGGTCAAATCTACTGGGATTCTTGGAGGTCAAGGTAAAATGCCCACAGTGGTGTCACCAGAGCTGTACCGATCACGTTTCTGTGAGGCCATGGACAAATACTTCCTCATGGTCCCTGATCACTGGACGGGTCTTGGGCTCAACTGCTGATTGGCAAGGGAATGTTACAGCTGGAAAGGGATATGCTGCTGTTTTATGTACTTTGCAGTGATTCAGTGGAAAAATGAACCCTCCATTATCTGCAGTGGTGTCTGAAGCTGGGCGAAACTGAACCTCTCTTTTTATGCTGTCTACAACTTGACCAAAACTGACATGCCAAGATCCAGTTCCTGAAGATCCACTGAAGAGACTGAACTGAAATGGCATAACTTGAGAACTCATGTAGTAGTGTTTGTTTATAACCTATTAATCTGAACTGTGGACTATGTAAAAGTTTATAAATGTACAGAGATGTATAA

Function

symbol description
pikfyve Predicted to enable 1-phosphatidylinositol-3-phosphate 5-kinase activity; ATP binding activity; and metal ion binding activity. Predicted to act upstream of or within intracellular signal transduction; phosphatidylinositol metabolic process; and phosphorylation. Located in membrane and perinuclear region of cytoplasm. Is expressed in several structures, including brain; digestive system; eye; muscle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Fleck corneal dystrophy. Orthologous to human PIKFYVE (phosphoinositide kinase, FYVE-type zinc finger containing).

GO:

id name namespace
GO:0016301 kinase activity molecular_function

KEGG:

id description
K00921 PIKFYVE, FAB1; 1-phosphatidylinositol-3-phosphate 5-kinase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_01897343_01919208.mRNA False 6441 mRNA 0.49 38 1897343 1919516

Neighbor

gene id symbol gene type direction distance location
CI01000009_01892219_01893628 NA coding upstream 3589 1892219 ~ 1893754 (+)
CI01000009_01733394_01738937 ITGBL1 coding upstream 157875 1731294 ~ 1739468 (+)
CI01000009_01692563_01725364 ITGBL1 coding upstream 171979 1692563 ~ 1725364 (+)
CI01000009_01570544_01595199 NA coding upstream 301877 1570079 ~ 1595466 (+)
CI01000009_01454610_01484907 NA coding upstream 411515 1453708 ~ 1485828 (+)
CI01000009_01966898_01976924 COQ10B coding downstream 47382 1966898 ~ 1977734 (+)
CI01000009_01990700_01991267 HSP10, HSPE1 coding downstream 71184 1990700 ~ 1991387 (+)
CI01000009_01993176_01999494 MOBL3, MOB4.S, HSPE1, MOB3, HSPE1-MOB4, MOB4 coding downstream 73660 1993176 ~ 1999873 (+)
CI01000009_02028234_02100154 PLCL1 coding downstream 108718 2028234 ~ 2100154 (+)
CI01000009_02233367_02235148 RABL3 coding downstream 313851 2233367 ~ 2235793 (+)
G51198 NA non-coding upstream 16433 1880711 ~ 1880910 (+)
G51197 NA non-coding upstream 16986 1880111 ~ 1880357 (+)
G51196 NA non-coding upstream 18495 1878637 ~ 1878848 (+)
G51195 NA non-coding upstream 21135 1875982 ~ 1876208 (+)
G51194 NA non-coding upstream 27488 1869642 ~ 1869855 (+)
G51216 NA non-coding downstream 33625 1953141 ~ 1953363 (+)
G51175 NA non-coding downstream 39744 1959260 ~ 1960717 (+)
G51228 NA non-coding downstream 104593 2024109 ~ 2024459 (+)
G51185 NA non-coding downstream 118953 2038469 ~ 2045644 (+)
G51238 NA non-coding downstream 179762 2099278 ~ 2116721 (+)
G51122 NA other upstream 215377 1680146 ~ 1681966 (+)
CI01000009_01431700_01434463 NA other upstream 458988 1429873 ~ 1435328 (+)
G50920 NA other upstream 1127110 769841 ~ 770233 (+)
CI01000009_00094836_00095813 NA other upstream 1801556 94371 ~ 97230 (+)
G51274 NA other downstream 335583 2255099 ~ 2350486 (+)
G51529 NA other downstream 1142517 3062033 ~ 3062587 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other downstream 1283256 3202207 ~ 3208984 (+)
G53388 NA other downstream 3602726 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 3940786 5931718 ~ 5943899 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00000785 LOC106586374 coding CM030137.1 CM030137.1 3181479 ~ 3205611 (-)