LOC103041404


Basic Information

Item Value
gene id LOC103041404
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 10562414 ~ 10572740 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258712.3
GGAACAGCAATGACTCACCTGCTTGCAGCAGCGTCATTTAGGCCAACAGGTGCAGTCATTTTAAAGCAGTCCTGAGACAGACTCTACACTCCAGAACTGTGCCTAGAACTTCTCTCACCCCGATGACTGCAGAAGATGATGCTGTGATGCGGTGATGCTGATAAACTGACCAGCTATCTATCAACCATACCCTTACATCAGCTGTCCATCCATCTACTGTCAATACCCGCTTCACATCAGCTGTCCACTCAGCCCTATTTGCCCCCTTTGCTCCACTACAcattatactctctctctctctctctctttctctctctctctctctatcggtTCTCCTCATACACTCCCTCTTAAACTCCCTCCGGTCTGGGGATTTGAAGATGCTCGAGCGAGGCGGGTTTGTAATCAGATGAAAGAAGAGATTATCCCGAGGCTCCATCCTCCATCCTTTTCTACTGCTGGAGAAGAAACATTAGAGCGGAGTGGGAGGAGACTACAGGCCAGAATGGGTGGGGTCTGAGGGGCTGAGTGAGAGAATAGGAGGGGAGGGGGTTCACCTGTGGATGTGtggacgtgtgtgtgtgcatatgtgtgtgtgggtgtgtgtgagtgtacgtGTGTGAGAGTGGAAGGAGACACcgctgcctgcctgcctgcctgcctgcctaccCGCCTGTCTGCGTGCACACCCGTCCCCTTTCAAGGTCCTGCATGCACAGCCGATGCTGGGATGACTGCAAGCCGAcattaaagaaagagagagagagaagaagaaaagaaaagaataaagagagagagaaggagagagggggCAGGGAAAAGCTGGAGAGAAGAAGAtcaagaaaaaggagaaaacaaGCCTCATCGGATTCTCTCAGCACAGGttttcgATGGCGGAGAGTGGGTGGCCTGTGTCAGAACCATCCGCACCAGAAGGTGCCATCTCATCTGAAGTACCCACCAAGAATGACAGCAATCTACCACTTCTAGAGACCTCCACTGAACTGGTAAAGGACCAGGTCCAGCCTGGTGAGCTCCACAACACTTCCAGTGATGTATCCTGCTCAGAAAGGGTGTTGGAGAATGACAGCCAACTAAAAGCAAAGCCAAGAGTTCCAGTCACTCATCGTGGATCTGACCGCTTATCTATTCGCAATGCATCATCACGTCCTCGCAGCATTGCAGAGGTCCACATATCAGAGGGGGTAGAGCTACAGCTAGGAAAAATCATGAACCATAGGAATGAGCAAGTGCCACTTCTGGCATTCAAGGAGAATGCTTCTGCCTCACATACAGACTTGAGAGAGCAGAGCCTGGCCCCGGATAAGCTCTCTGTTCAGAGGAGCAACTCGGATAGCCTGCAGACGCAGAAAGAATGCCCTGCTCCTCTTCTGCACTGTGAAACCGGTGGGTCGAACTGTCTGGGGAGGAATCAAAAAGCACCTCTCCAgtcatttatttgtaaacaaGCCATGCAACTGCAGCAGAGCAATACGACCACCACCTTCTGCAGGGCAGGCAGCACCGGTTCAGGAAGCCCGACACAGCAGAGCTGTTGTATTCATATTTGTAATTCTGGCACTGCCCAGTTCACAGGAGATCTTGGCATGGACACGGCTGTCTGCTGTGGCTCATACAACCATGGAACTCTTGAGGACACTTTCGCTGCTTACTGCCATCCCCAGCCCATCCCAGCTCCTGCCCAGCTGCTGCCCCGGCAAATTGGCATGAAGGGAGACTGCAGGGGCCAGATGGGTGGCCCAGCTTTGCTGGCTCTCCCTCCGCTTATTTCTTCAGTTAGCGAGACAGGGCTGGACGCCAAGAGGCTGCTCCGCTGCTGTAACCTTGACTGCAATTGGCCCAGTCCGTTGTGCCAGGCTGGGAGTCAGCATCAACTCAAGGAAGAAGGCAGGAGCACCAGAGAGGCAGGGACCATGACCTCCAGCAAGGAGCTGAGGGACGTCGGAGTCCAGGTAAGACTTCAGATGGATTCCGACAGGCCGCCCCAACATGTTTTCCCAGAGGTTTGCCTGATGGATGAGAGGACGAATGGAACAGACAAACCTTCGGCATCCCAGAAGTCACCGGTGAAGGAGGTGAAGTGGGATGCAGAAGGCATGACATGGGAGGTTTATGGAGCTTCGGTGGACCCAGAGGAGCTGGGCCTGGCCATCCAGAAGCACCTGGAGCTGCAGATTAAGGAGACTGCAGTAAAAGCAGCAAAGCTTGCCCGACAGGACACAAACATGTCCCAGAACAGCACAGGGAAGAGCCAGCGCAGGAGGAGGAGCTTAATGGCAGCTCTGCGTCCTCCAGGCTGCTGTTCCCGCACCACTACTGCAGTGGACTGACTGCCAAAAGAACATTAGTTTCCCTGTTTTTAAGCCTCAaatagacacacactcacacacagacacacacagagcatacAAGGATAtggataaagataaaaaaaagcaaaagcttcAATAAATGATTAACAGACTTCTCCTCTGACTATCCCACCAGCCACCAAAAATACTGTACAGACCTCAGATCGCATACAAAGAGTTATCAATGAAaaagtgtatgtttttttttaatagctatCAAATCTGTTCTAGAATAGAGCAGCAGGTGATCTCTGGAGACAGAACACGTGCCTAATAGTCTTCCTTTTGATTCCAGCACCTCACATattgcatttaaaaattataagtagATTTTAAGGGCTATATGCGTAGTATGTGATATATTGTGACTGTCACGCAAGAATCTATCTTGTCTTATCTCAATTTTTGCTGGGGTTTATTACAGcaaaatgtaacataataatataattctgTCAACAATTCAAgatgaaaggaccaatagaaatgctccaaggGACTTTGACACTGACTTCCAGTAAAAGCTGAAATCTAAGTAGAAATTTTCTTCTCCTGCAAAGCTGCCTTTTCGAAGGTACAACTTTTTGTGTGAcggtaaatatgtatataaatagatataaataaCAGTAGATATATGcttctattgtttacatttattaGTTATGGCAATACCAAACCCACATTATGCTCATTCCAGACCCCTGAAGTCTGTGGTCTTTTGCAAATATGTACCAGATCAATTTCTCTTTGTAAACAAGTGCTCTTGCTCACCCAGCCACATCATTTGCTCAGACCTCAGTTTAGTGGTTCAGTCAATAAATTACAAGCGTGACCCAAAGTATTTAAGCCAAGCAACTCAGCAGAGGCAGATGGATTTGTGTTATGAACTGTCTGCAAATGGTAtgattcttacttttttttgacACATTAATCATACTGGCCCAAAACTGTAGAACAACATGTGAAAAACATAACCTTCCTGGTAATGTCAAAATAGTACTGTTGTGTTAAAtagaaaacacatgaaaacatatGACATCTATAATTAAACCCTATGACATTTTCATGTCAGTCTTACCTTTTTTGATTGTtcacttttagtttatttttataaatatacttttaGTCCATGTACATACTTCATGGCTGTAGTTGCACTGTGATTGGAGGCAGTATGGTGGCGTAAAGGACTGTTGCACCATCTGTTGGAGTAAATGTATCATTACATCTCTACATTTAATGCTATGATGATGGTTCCTCGGTGTAGACAATGATGTTGCAATTACCTATTTATTGTGAAGCAGTAAAAtgaatttagtttttaaacttaCAGAGGATTTTAGGCCTTATTCAATTTCCCTTTAAACTGGAGAATATACAATAAAGCATCACCCAATATAAGTAAATCCTgggtaaattaataataaacggGAAAGAAAGACCAAACTAAAACAGCCCATTGAGTTTGAATATAACCTGTTTGTAACATCTTTGAACAAGATTGTGTTTTTAATGGTGACATACAAGTTTATAAAAGTCAGCATGCTTCTTCTAATCAAATATTCTGTATAAAGAATTTGTTATTTTGACATGTAGAACTATTTAGCTCAGCAATAAGATCCCTttgagcatgtttgtgtttgtgaaagagagagagtgccagATCACAGCGAGACACTGTAATATTGTTAGAATGCTCTCTAGAAAcattccagttgttttaaatgtccCCTTTCGGGAAGCACAAATGTAGGCCTGGTAATCCACATGACCTgacattgtaattgtaattgtaaaatgtgtattatttattttcaagaaccagataaataaatgagaatTATTATTTGA

Function

GO:

id name namespace
GO:0051179 localization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258712.3 True 4220 mRNA 0.45 3 10562414 10572740

Neighbor

gene id symbol gene type direction distance location
LOC103041708 LOC108438182,LOC108263627,LOC107565930,LOC107666514,LOC107713893,LOC107696877,LOC107743575,LOC106606775 coding upstream 7193 10529629 ~ 10555221 (+)
mmrn2 NA coding upstream 675669 9857376 ~ 9886745 (+)
glud1 glud1,glud1a,gdh01,LOC103026661,LOC108438199,LOC107743560,LOC107563055,LOC107725450 coding upstream 744721 9800696 ~ 9817693 (+)
LOC103028294 LOC108438200 coding upstream 802532 9696027 ~ 9759882 (+)
rufy2 rufy2,LOC107676589,LOC107743555,LOC107725492,LOC107563060 coding upstream 883357 9660500 ~ 9679057 (+)
dna2 dna2,LOC107743557,LOC107601826 coding downstream 22590 10595330 ~ 10612761 (+)
kmo kmo,LOC106930458,LOC106526537 coding downstream 55679 10628419 ~ 10653984 (+)
LOC103037124 rmdn2,LOC108413000,LOC107747293,LOC107665610 coding downstream 284666 10857406 ~ 10884537 (+)
nanp NA coding downstream 370677 10943417 ~ 10945887 (+)
LOC103035683 LOC103035683 coding downstream 385519 10958259 ~ 10965557 (+)
G215397 NA non-coding upstream 55342 10501711 ~ 10507072 (+)
G215350 NA non-coding upstream 297678 10263537 ~ 10264736 (+)
LOC111195963 LOC100707324,LOC106606853 non-coding upstream 405114 10141138 ~ 10157300 (+)
G215315 NA non-coding upstream 424292 10132580 ~ 10138122 (+)
G215296 NA non-coding upstream 432676 10128748 ~ 10129738 (+)
G215411 NA non-coding downstream 57716 10630456 ~ 10633037 (+)
G215419 NA non-coding downstream 81387 10654127 ~ 10654340 (+)
G215420 opn3 non-coding downstream 84455 10657195 ~ 10657634 (+)
G215421 opn3 non-coding downstream 86266 10659006 ~ 10659253 (+)
G215423 opn3,LOC107549142,LOC107665579,LOC107586115,LOC107747290 non-coding downstream 90211 10662951 ~ 10663267 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other upstream 1531816 8958299 ~ 9030598 (+)
G214773 NA other upstream 2451089 8110948 ~ 8111325 (+)
LOC103021346 LOC108412479 other upstream 2685296 7856162 ~ 7877118 (+)
pold4 NA other upstream 2749378 7810978 ~ 7813036 (+)
LOC111196031 NA other upstream 4153346 6399076 ~ 6409068 (+)
sprn sprn other downstream 2755 10575495 ~ 10583088 (+)
G215513 polr1b other downstream 374339 10947079 ~ 10948287 (+)
cpeb3 cpeb3,LOC106604870 other downstream 552960 11125700 ~ 11195423 (+)
LOC111195936 NA other downstream 1037578 11610318 ~ 11613123 (+)
G215834 NA other downstream 1632761 12205501 ~ 12206164 (+)

Expression


Co-expression Network