LOC103042697


Basic Information

Item Value
gene id LOC103042697
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 6428242 ~ 6433128 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015604613.2
ataataataagttattaATTGAGAAATTAAACTGCACCGTAGTTTGTTTGCACTTAGAACAGTTCAGGGAGCATTTATAATTGTAAATCCGGTCAGAGTCCTTTGCTGGTGTGTTGGCGTCAGCAGTGCCGTCCCAACTGGTGCTGGATTAACGCAGCTTGCATATTCGTTGGTTTTCTCCAGTCATCCACAGACCGATGAGATTCAGCCTGAATGCGGAATGTGGAATagggaaatgagaaatgagacaATACTACAGGAGGCAACCTCTGGAGCTGAATCACCCTTTAACTGTGTGAAGGACGATGCAAAGCCAGAAGAACCTGAAGCATCATCCACTGGCCCAGAACAGCCCTCACATCTAACCCCAAGTGCAGGTTCTGGACTATCACAGTCTATGAATGAAGTAATACAGGAACTCAAAAGCGTCCAGCGTTCTGACCAACACACATCCCAAATTTCTACTCACTCAATGGACAAAGATCAGAGTGTCTCCAGTCGTCCACAGACCGATGAGATTCAGCCTGAACGCGGAATGTTGGAtaggaaaacaaaaaaggagACAATACTACAGGAGGCAACCTCTGGAGCTGAATCACCCTTTAACTGTGTGAAGGAAGGTGCAAAGCCAGAAGAACCTGAAGCATCATCCACTGGCCCAAAACAGCCCTCACATCTAACCCCAAGTGAATGTTGCAGGGATAAAGGAGAGTCACCAATGAGTCACCATTCTAGGCCAAGCCTGTCACCTAAacccacaaaaacaaacagattacgaaggcatgtatttatttattttttacttttacacttatTACGGACTATGAATACACAAGCATGTTTAATCACAGTAATGTGTTAACTGTGTGATCTCTAACAAGTATTTTGCTGACTTTGGGTAGGGTAACTGAAGAAagggtaaataaaataaaaacattgattatTTGTAACAGCTGGAACCTGTTTGAAGCATCCTAACACTATATTTGCACCTGTCAGAGCGAGTCTATGCCAGTTTCTTGAGCGACTTGAGCTCTACAATCTCTTTGtttcttctttccttttctgTCTGAGATTTAAAGTGGCTGTACCCTCTTTCTTTTACTTCGcttgatttttccatttttctgtgtttgagGGGCTGTGCCCTATTACACTAGCATTTCTCAAGCTTACTCTCTTCCCCTCCTCTTAGTCTGTCAGAGTTTGAGTGGCCTTGCCCTCTTTCTCTTGTACTCTCCAGGTTACATCGAGTTAAGGAAATAAATTGCACTAAGCATCCATTTATTCTGTGGTTGTGTTTGGGAACTTTTTGTTTACCCCAGCAAGTTTCCCATGATGTTCTTTTGTTTATTCTCCCAATGCTTGGCGTGgtggattttttcttctttttttttttttttttggtccaccTCAACCAATACCCCCTTACCCGGCCACATCCCAGTCCACCATGTTAGCATGATACCCTCTAATCCCTGGGTGGCCTAGGCCAAATCCCAGAGggttttttttacttgtaaatTTACCTGCTCTGAGGGTAGATGATGTGTAATGTAACTGAGTGCACATTTACTGGCATATATTTctcattataataaatatatttgtttctgtGATTAGAGAGATGCTTCAACCGGGCCAACAAACCACAAAGTTCAAGTTTTTGTTGGCAATAGTTATTGCACTAATTGCAGCTATAATTTTAAACGTACAGactgagaacaacaaaacacaaaaatctgtGGACCACGGTAACCATGCAGTGCAACAATCAAAAGAGCCGCTTCGGATCCTGATGATTGGAAAAACAGGTGCGGGCAAGAGTGCAACAGGAAACACCATCCTTGGAAAAAAGGTCTTCACATCTGACTTCTCTTCCATATCTGTCACAGAAGAGTGTGAAAAATTCAGTGGAATTGTGAATGGGAGGAAAATCTCTGTTATTGACTCTCCAGGTCTGTTTGACACAAAATTAAGTGAAGATGAGGTGGTTAATCAGATTAAGCTATGCGTTCCACTGTCGGCTCCAGGTCCACATGTCTTTCTAGTTGTGATGCCATTGGGTAGATTTACAgatgaagagagaaaaacagtggAAATATTTCAAGCTATTTTTGGCGAGGAGTCCTCCAGATACACTATGGCCCTGTTCACACATGGAGATCAACTGGAGGGTAGGAACCTTCATCAGTTTGTTCGTGCAAACTCAGATCTTTTGAGCTTCCTCAAGAAATGCTATGGTCGATACcatgtgtttaataataaagatCAGAATCCAGAACAAGTGCTCCAGCTACTGGACCAGATTGATAAAATGGTCACTGGAAATGGTGGAGAACACTACACCACAGAGATGCTTGAGAAGACTGAGAGGGCGATAGAAGCAGAGAAACAACGGATCTTGAAAGAGACCGAAGCAAAGAGACTAAAAGAGTTAGAAGAGCTAAGGGCACAGTTGGAAGGGGAAGCTTTGGAAAAAGCACAGAAGATTCTGATGGAGGAACAGGATAGGGAAGCAAGGCGTCAAGCTGAGAAAAGTGACTCTATAGTTTCCCGCATAGGACAGTTTTTATATAATACAGTGGATGTGATTCATACAATAATAAATGGCATTCCAAAGATCTGCATTTCAATAGGCTGACATGAACACAA

Function

GO:

id name namespace
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015604613.2 True 2655 mRNA 0.42 6 6428242 6433128

Neighbor

gene id symbol gene type direction distance location
LOC103036371 NA coding upstream 12624 6411469 ~ 6415618 (+)
LOC103036975 NA coding upstream 29761 6387504 ~ 6398481 (+)
trnak-cuu_9 NA coding upstream 102185 6325985 ~ 6326057 (+)
LOC103038786 LOC103368813 coding upstream 104012 6314852 ~ 6324230 (+)
LOC103039100 NA coding upstream 115635 6302716 ~ 6312607 (+)
LOC103035747 NA coding downstream 2593 6435721 ~ 6448166 (+)
LOC103036066 NA coding downstream 21319 6454447 ~ 6458321 (+)
trnam-cau_43 NA coding downstream 48430 6481558 ~ 6481629 (+)
lef1 lef1 coding downstream 215813 6648941 ~ 6728983 (+)
gstcd gstcd,LOC107757010,LOC107729368 coding downstream 352462 6785590 ~ 6993387 (+)
G214174 NA non-coding upstream 152319 6275714 ~ 6275923 (+)
LOC111195955 NA non-coding upstream 192522 6218386 ~ 6235720 (+)
G214134 NA non-coding upstream 315232 6112603 ~ 6113010 (+)
LOC111195966 NA non-coding upstream 340645 6086759 ~ 6087597 (+)
G214126 NA non-coding upstream 341741 6086241 ~ 6086501 (+)
G214227 NA non-coding downstream 36345 6469473 ~ 6470200 (+)
G214283 NA non-coding downstream 148166 6581294 ~ 6581733 (+)
G214290 NA non-coding downstream 198937 6632065 ~ 6632374 (+)
G214294 NA non-coding downstream 232083 6665211 ~ 6698418 (+)
G214304 NA non-coding downstream 323277 6756405 ~ 6756758 (+)
LOC111196031 NA other upstream 19174 6399076 ~ 6409068 (+)
G214175 NA other upstream 143874 6283781 ~ 6284368 (+)
G214006 NA other upstream 906567 5521184 ~ 5521675 (+)
LOC103034491 scoc,LOC103034491,LOC108434805,LOC107674238,LOC108263532,LOC103132857,LOC103463814,LOC106946201 other upstream 1068510 5349167 ~ 5359732 (+)
G213891 NA other upstream 1254146 5173069 ~ 5174096 (+)
pold4 NA other downstream 1377850 7810978 ~ 7813036 (+)
LOC103021346 LOC108412479 other downstream 1423034 7856162 ~ 7877118 (+)
G214773 NA other downstream 1677820 8110948 ~ 8111325 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other downstream 2525171 8958299 ~ 9030598 (+)
sprn sprn other downstream 4142367 10575495 ~ 10583088 (+)

Expression


Co-expression Network