LOC103026999


Basic Information

Item Value
gene id LOC103026999
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 36827033 ~ 36856163 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015605419.2
AATATGGCGCCTTAGCAACTGGGACGCAGATGTGCTTAGCAACGGTCTGATGTAAACACGGTGAATTTTCCGAGCTGAGGGTTTTAAATGAACGTTTTAAAGCTATTCATTGGCTGAGGAGAGATCTAAAGCCGTGATTTATATTATATCTGTGTAGTGTAACCGCTAGTGTTGAGCAGGAGCTGAGAGCGGGGCGCTGGACGCCGGGCTGTGTGAAGGAATGCAGGGGGAGAGTCTGTGCTGAAGATGGTGTAGCTGAAAAGTTGAGTTTGCTGTAAAACCAGAAGGAAAACTGAATCATGACTCAGAGTGAGATGCTGGGACACAGTGGAGATGAGGAGATTATCAAAGAACTGtgtgtgtgtaatggagtgTCCTTTGAGAAGATTTCCCAGGAAGGGAGTGGAGTCACAGCACTGGAGATGTTTTTCTCTGGTTTTCCCCGGATGGTTGGGCTTTCTCTTTTCCCCAGGCTGACCAGGCTCACCCTTGTGGGACAGAGCATTACACAAATCCAGGGTTTAGAGAACTGTCCTTCACTCAGAGAGCTGTGGGTGGTGGAGTGCCAGATTGAAGAAATCTCAGGTCTAGAGAAGTGCCTGCAGCTGctgaagctttttctttacgaCAACAATATCAGTAAGATTAGCAGCCTGGAACTTCTTACTAACCTGCAGGTTCTGTGGCTCAACAACAACATCATCTCTGAGATAGAGGGCTTAAGCATGCTGGGGAACCTTAGGGAACTTAACCTGGCTGATAATTTAATTGAAAGTATTGGAAACAGCCTTGACCAAAATACCAACCTCCAAAAGCTCAATCTCTCAGGGAATAAGATCAGTTCCTTTAAGgagCTGACCCATCTGACTCGTCTAAGTAAACTGAGAGAACTGGGCCTTAAAGATCCACAGTCCCGGCCAAACCCAGTGTGTATGCTGTGTAACTACTTCACACACATCCTGTACCATGTTCCCACTCTGCAAAGATTGGATTCCTATGATGTTACCAGTAAAGCAATTAAAGAATCGGCTGAGTCTACAGTGACAAAGAAGATGATGTACTATAACATGCGGGTGCACAGCGCTCAGAGACAGTTTGACAACACTGAAGCTAAActccagcagcagaagaagaagcaaaTGCAGCGTCCTGAGGAGAGGATCCGAACACTGAGCTATACACTCAAACATTTTGAGTGTGAGCTGGCTGAAAGCAGAAAGGGGGTAGGTCATCCCAAGGACCAAAACATGGAGCCTGTAGAAGCTGGATATGAGAAGAGAGTTCAACACAAACTGACCACCATCAGACAGAGGATTCAAACCTGGGAGCAGAGAATAGAGGAggTGGAGGCATGTTTTCGGCGAAACATCACTCAGGCATTAGACAGGAAGGAGCTGATGGTTCAATTTCTGGTGATGGAGTTGGAGACAGTAGGAAATATTCGCTTTGAGGAGGGAAATACCAGTGACGCCTGGTTCAGCTCCTGTTATGATCTTCTGCTCTCTCGTTTCTGTGCACTGGATCACAAGCCCCACAACATCACCGGCATTAAGATCAACCGGATCATCCGGGTGCATAACCGTGTGCTCAGACTGCGGTTTGAGGATAAACTGCACTCCATGCTGACCAGTGAGGAACCTCCATTCATCTCACAGAACTACAAGCGCTTCTTGGACTATCTGTTCTATGCACCAGATCCTGAAAGAAGCTCTGAGGGGAGCGAGGTTCTCTGTATTCTTGAGAACGGATTTAAATCAGCTGAAAGCTACAAGGATCTAGATATGGATGGAGCAGTTCCACTGACCAACAGTGTCAGCGTGTATCACCAGCCATGGAAACATGCCACCAAACACGGAACTAAAAGACCAGCGGAGCCCCCACCCCTAACACCTGgTCAGCTGATTGTGTCTAAAGTGTTCCTGGGTCACAGTGTTCCAGCAAGAGATGGAGTACCTGTGAGCTCTGAGTTCTACCCCAGAACTCACTCGGTGTACCGCAAGATCAGCACCAAACAGAACACCTTCAGTTTTGGGAAACCACGCAGCAATGCAGCATGTTCCTCAGACCTGCAAGGGAGCTGTGACTGCAGTCAGAAACAGACTATGTGGTTTGTTTTTGATCACGAGCTCGTCCTGCCTGAGTACCTCATCGACTTCGACTTCATCAGACAGGAAAAGCCCCGGCACTCTCACCCCTTTACTCCAGGCCTCAAACCCTCTGGTGAGCCAGGTGATGCCTCTCCACTGCTCTGTGATAACGAGGCTCTTGATAGAGAGGCGCTAGCCCTGGAGCCAATCCTCGAACCCCGACCCAAACTGCTCAGCCTGGACGAGAAAAGCATCCTGACAGCGGCCCAAGCAAACGTCCTCAGCCAGATCACTGTGCTCAACCTCCATGATAGTGGTCTTACCAAGCTGAAGGAGATCTCCTGTCTGACAGCACTCCGCCATCTGACCATCAGCTTTAATGAGTTCACGCACCTGGATGACATCTCACATCTGcccaGTCTGGAATGTGTGGACGCCAGTTTCAATCAAATTGTGACTCTGGGGGGCCTGCGGGGCCTCGGACGTCTCACACAGCTGGACCTACGCTGGAACCAGCTGACCCACGCCAGGGACGACATGGCGGTGCTGCAAAAACACGCACCATCCCTGTTACGCCTGGACACACGCCAAAACCCCTGGACAACCCAGgGTGAATGTGTGAGGATGGTGGTGTTGGGGAGACTGAGGACTCTCACGCACTTTGATGGTGTGTTAGTTACTGAGGAAGAAGCTGCTGATGCTGAACAGATGGCTACTGTCTCCAAAATCAatgaagcATCTCTTGTGGCTCATTCTCGTGTTGATTCTGATCGCCCACGATGTCTAAGTCTCCTCACTACAGCCCAGCTCCTCACACACCTGTGGCCTTCACCGTGGACACACACTGCAGAGCCTGAACCAGGGTGGACCAACAAAatCACTGCTCTGAATCTGGACGGTCAGCGGTTGGCCCGTATCGCTAATCTGGACAAGCTGGTGAACCTGCGCTGGGCTTCGTTTAATAATAACGAGCTAAGTCATATTGAGGGTCTGGAACACTGCCCCCTGCTGGAGGAGCTGTCCCTCAACCATAACAACATCAGCAGCCTGGATGGTGTGTGCAAGCTACAGCGACTGACCCGTCTGAGCGTTAACAGTAATCAGCTGCAGTGTCTGGATGGCTCCGTGTTGGATCACCTTCCCAATCTCCACTTCCTGTCTGCTGAGAGAAATCTGATCCCCTCTCTGCATGGAGTTCAGAGATCACGCTCCCTGTTTGAGCTTTACGTCGGCAACAACAACATCAGCACCTCCAGGGACATCTACCACCTGAAGGTGCTTACTAGTCTGATCATCCTGGATTTGTACGGGAACCCTTTAGTGGAGAAGTTGGAGAGTTACCGCATTTACGTGGTCTTTCATCTACCGTCTCTTAAAGCACTGGATGGAACCGCTGTGGAGGTGACTGAGTGCGAGAATGCTAAAGATGTATTTGGAGGCAGACTCACGCCGGACATGGTCACTGAGAAACTGGGTATTTCAAACTACAGAGAAATGACAGAGCTGGAGCTGACAGCCTGTTCTATCAGgatgGTGGATCTTGTTCCTGCTGATTTGTTTGTGAACCTGCGCTGCGTCAATCTGGAGCGGAATAACCTCACCTCCTTTAGCGGCCTTATCTACCTGCCCAACATCACGGCTTTATGTTTAAACTACAACCACATCGAGTCGGTTCTCCCACGccagaaaacacaaacacaccacagcCTCAGACAGCCACCCTACCACAAAGTTAGCTCCAGTGGCTACGGACAACAcaacagcaaaaacagcagGGACGCCCTGTGTGGGGAGAGCTTGGAGCCGCTAATGGCCAGTTTGGAGGTTCTGCACCTGGGCTATAACGGCATTTCCAACCTCAGCGAGCTTCAGCTCAGCAGACTGACCAATCTCAAATCTCTGTTTCTGCAaggtAATGAGATGGTGCAGGTGGAAGGTCTGGAGGGTCTGCGGCGTTTGCAGGAGTTGGTTTTGGACAGGAATCGACTGAGGTGTGTGAGCGCGAACTCGTTTAGCGCTCAGGCCGCTCTGCTCGAACTCCATATGTCTGACAACCGACTCCGTGACCTCAGCCACCTGCACACACTCAGCCAGCTTCGCTCACTCCACCTGGACAACAACAAAGTGCAgGATCTCTCAGAGCTGGAGAAACTGGATGCTCTACCATCATTAATAAAACTGTCTGTATTGGGCAACCCGGTGGCTCGGCGCTGCCTCCACAGGCCAGTGGTTGTTCTTCGTCTCCCCGGCCTGCAGGTGCTGGATGGCATCTCAATTACACTGGATGAACGAACCAGGGCTGAGTTAACGTATGCAGAAGGACagtacCCCATTCCCCCAGCAGTAGGTGCTGAAGTGGTCTTTCCTGGCTTATCTCCACTGAACCACTCTCCTGCccgaggcttcagcagctttcAGCACGACATCATCTTCACCCCTAACCTGGACGACTCACACCTCAGCAGTAAAAaTAAGAAGCATAGAGCTGGAGGCACACACTCCCGCAGTGCTCAGAGCGACGGCCGACACAGAGGAGGACTCAGCGGCCACAGAGTCTACATCAGCTACCCCAGTACAGACATTGACAGCAGATTTCACAGCGGGCCCAGACCTCCACTGTAACCCATCATAAGGATAAAGGAAGGCTGGAAATGTGATCTGTACTGCtgtaaatttactgtacaaatgTTTAATGTAGAATATGTTGATTTTGTTTTCAAATGgaaacataaatgtaaatgaagtcactgattttattatgttatattgtaTGAAGTGTATTAATTCACTACTATAAAagaattggtattttttttgcttgtggCTCCCCTACAGTTGGGGAATGTTATTCACCTTTACACCACggcattaaaaacaaataatttattaagcACCCCCTTATGGTCAGCTGATCatgtgcatttgttgacaagcagAGAAAGAGCAGCATCTGAATGGGAGAAGCGTGTGGTGGCTTGGTATAATGGTAAATGATGTTCTACACAATAAATCTGCAGTGTTctactactgtatatatttagacTA

Function

GO:

id name namespace
GO:0044782 cilium organization biological_process

KEGG:

id description
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015605419.2 True 5132 mRNA 0.49 32 36827033 36856163

Neighbor

gene id symbol gene type direction distance location
tdrd9 tdrd9 coding upstream 59800 36735850 ~ 36767233 (+)
kif15 kif15 coding upstream 95602 36704679 ~ 36731431 (+)
LOC103027910 NA coding upstream 126632 36691081 ~ 36700401 (+)
LOC103028640 LOC108440913 coding upstream 152927 36669635 ~ 36674106 (+)
LOC103029801 dst coding upstream 252693 36423112 ~ 36574340 (+)
pcnx4 pcnx4,LOC107683173 coding downstream 2789 36858952 ~ 36877930 (+)
ppm1a ppm1aa,LOC108414062,LOC107707101,LOC107757136,LOC107588600 coding downstream 42893 36899056 ~ 36927397 (+)
LOC103023682 LOC108414060 coding downstream 79898 36936061 ~ 36942741 (+)
prkch prkcha,prkch,LOC107675581,LOC107757130,LOC107707065,LOC107087558,LOC106909499 coding downstream 167174 37023337 ~ 37081624 (+)
hif1a NA coding downstream 243235 37099398 ~ 37143669 (+)
G221973 NA non-coding upstream 98944 36726518 ~ 36728089 (+)
G221891 NA non-coding upstream 203238 36620288 ~ 36623795 (+)
G221879 NA non-coding upstream 381661 36443306 ~ 36445372 (+)
G221872 bag2 non-coding upstream 436839 36387252 ~ 36390194 (+)
G221871 NA non-coding upstream 441494 36365601 ~ 36385539 (+)
G221993 NA non-coding downstream 19077 36875240 ~ 36923898 (+)
G222004 NA non-coding downstream 32517 36888680 ~ 36897632 (+)
G222103 NA non-coding downstream 195057 37051220 ~ 37052681 (+)
G222105 NA non-coding downstream 210354 37066517 ~ 37151937 (+)
G222134 NA non-coding downstream 298069 37154232 ~ 37154626 (+)
G221878 NA other upstream 417992 36403148 ~ 36409041 (+)
G221737 NA other upstream 770343 36052516 ~ 36056690 (+)
G221728 fbxo9 other upstream 854679 35969989 ~ 35972354 (+)
gclc gclc,LOC107597697,LOC107664701,LOC107712340,LOC107688787 other upstream 938218 35870018 ~ 35888815 (+)
LOC103031497 NA other upstream 1608655 35208431 ~ 35218378 (+)
mnat1 mnat1 other downstream 120243 36976406 ~ 36991484 (+)
slc38a6 NA other downstream 144922 37001085 ~ 37019302 (+)
LOC103040744 LOC103040744,LOC108439706,LOC108263332 other downstream 1879776 38735939 ~ 38744184 (+)
oip5 NA other downstream 2038710 38894873 ~ 38898833 (+)
LOC103047486 LOC108443507 other downstream 2341544 39197707 ~ 39271138 (+)

Expression


Co-expression Network