frmd6 (frmd6,LOC107654939,LOC107736757,LOC107683538)


Basic Information

Item Value
gene id frmd6
gene name frmd6,LOC107654939,LOC107736757,LOC107683538
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 13271416 ~ 13299019 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015605668.2
GTGGAGCATACCAAGATCTGCTGGACTGGGGGAGGCGATAGTGCACGCTCACTTTTTCTCATATCTTCAGTTCAAACAACACAGGCTGCTTCTTCAAAGGCGTCCTGCGTTAACGCGAGCTGAGGTCCTGTCCTGGTATTTTACTGCCACACTTTTACCACCCCCTGTTTCTGCTCAGTTGGGTCATTCCACCCAGCAATTCCACATGTTAGCGTGAGTTGTTAGCTCtcaggagctgctgctgcagttttcCACTCTCAGTCGATGCTGGACGGGACGTATAAACGGGATTAACGCTATTAACTGGGCTCGTTTTGGATTAAATTGTCTTGAACGGAATTGGCTGATCTTTTTTTCGTAAAGgGCAGTTCACATCATACCAACATTTTGAGGGAAAAATGACGGTACAAAAGAAGAAAGACTAACCGGAGAGAAAAGGGGCATCAAACCAGTTGTGAAActggtgtgcgtgtgtgtgaggacTGGTACCAGTAGAACTATAAGAGTAGGTGTTAACTAGTTAGTACCAGTACTGGAGTGAAAGGCAGCGAGAGAGCAGGGGCTCTGGGGGCAGAGCTCCACACAGGGGCGGAGTTTCCAGGAGGAAGTTGGCCAAACATGAACAAATTGCCGTTCCACAACAACAAGACCATGCAGGACCgccgttgtgtgtgtgtgtttctccctAATGATGACACACTAAACGTCATCGTTACTGTGAAGACTCTGTGTCAGGAGTTGTTGGTGCAGGTGTGTGATCTGCTCCGGCTGAAGGACTGTCACCTGTTCGGCCTGACCGTTGTTCAGAACAATGAGCACATTTATATGGAGTTGGGACAGAAACTGTCCAAATACTGTCCAAAGGAGTGGAAACGAGAGGCAAGCAAGGGAATTGATCAGTTTGGGCCTCCGATGATTGTACACTTCAGAGCACAGTACTATGTGGAGAATGGCAGGCTTATCAGtgATCGTACAGCgaggtattattattactggCACTTACGGAAGCAGGTGTTGCAGTCCCAGTGTGTGCAGCGAGAGGAGGCCTATTTCCTGCTGGCTGCGTTTGCTCTGCAGGCGGACCTGGGAAATTTCAAACGGAATAAGCACTTTGGCTCTTACTTCCAGCCTGAGGCTTACTTCCCTTCTTGGGTCATCACTAAGAGAGGGCGAGAGTATATTCTGCGTCACATTCCCAACATGCATAAGGAACAGTTTGCTCTGACTGCCTCTGAGGCTCAGCTGAAGTACATCAAAGAAGCAGCTCTCCTAGACGACGTCACAGTCCACTACTACCGCCTCTACAAGGATAAGAAAGAACTGGAGGCCTCTCTCACTCTGGGACTTACACTGCGTGGGATCCAGATCTTTCAGaATGTGGGCATGGTGAGGCAACTCCTGTATGACTTCCCCTGGACGAACGTGGGCAAGCTTGTATTTGTGGGGAAGAGGTTTGAGATCCTACCTGATGGCCTGCCCTCTGCCAGGAAGCTCATCTACTACACCGGCTGTCCTGTTCGTTCCCGCCACCTCCTACAGTTGCTTAGCAACAGCCACCGCCTGTACATGAATCTTCAGCCTGTACTTAAGCAGGTCCGGCGCCTAGAGGAGAATGAAgAGAAGAAGCAGTATCGGGAGTCGTATATAAGTGACGCTCTGGAGCTGGACATGGAGCAGCTGGAGCAGCGTTCCCGCGCGAGTGGCAGCAGCATGGGGAGCGTCTCACGCCAGAAACGCTTCTCACGACACTCCACAACCAGCCACAGCAGCTCACACACCTCAGGCATTGACACCGACAGTTTCCGCACTCCAGCGCACACACCTCACCGACCGCTGCGCACACACTCCTCCTCCAACACAAGCCATGCCAGCACACACACGTCTGGCATTGAGAGCAGTAGCAAGGAGCGGTGCCTGGATGATGAGGAGATTGAGATGTTGGTGGATGACCCAAAAGACTTTGAGGAGCTGCATGAGCTAGCACTGGATCTCAGTCAAGACCTCTGCATTCACATCACTGAGGACATGCTAACATCTGCGCAGAGCAATGGATACTCTGGTTTAGTGGTGAAAGAAGTGAGCTCATCAACATCAAGTTCTTCTGAGACTGTGGTGAAGATGAGAGGCCAAAGCATCGAGTCCCTTCCTCAGactGTGTCAGAAAGGAAGTCTCAGAACTCCACAGATCGGCACAGCCAGTCACTGGATGATGTGCGTCTATACCAGAGGAATTGCCAAGAGTGGGCGGAGCTCTGTGAAGACACCGCTCACAGTTACACATTTGGGTGTAATGAGGAGCTTAGCAACGGCTGCGGCTACCAGGGACTTGCAGAGCAGTGCGCTGGGATCCGAGACAACCAGCACCCTTACCCCATCAAAAGAACCAACAAATACTTCTCCCTGGACCTGACCACAGAGGAGGTGCCTGAGTTTGTTGTGTGAGAAAACGATCAAAGAAAACCTAAAAGATGATGGAAGTGTTTGTGTGAAAGAGTGGAGAAGATATGCGATATAATGTGATGGAGCTGCTGATTTCAGCCTTTGAACTCAAAGGAAGTGAAAGGGAACCTGCGCCAGTCTGTCTTACCAGTCAGCTGCTTTAACCAAGAGTGAACTCATCCCGGCCAACATGCTCATGATGGGCTCACATGGGTGGAAGGTGTGATAGGTGGGTTCAAGGTGGGcatgggctctgagtgggttCATTCATGTGTTTTGGGCTGGGCTACCCAAACAGGCCCCATCATCTCAGCCCACTGTTAAACCACTTGGGTCCCATCTAGGCTCTACTTGCAGTGTAACGCCCATATAAGGGTCAATGTTTAACCCCTAAGTCCCATCACTGACTCTGGTGGGGCCAATCACTGACATCCATATGAGGGGCCAACATGAAACCCATGGACAAAACCTACTGGGTTCCAGTTGAGCGACCCACACAGGCCCCTCATGGTCATGTTACTTAGATTAtctagcagtgtgtgtgagtgtgtatgatggtttgtctgtctgtctgtctttgcaTGCTAATCCAAACGGGATTTAATTTCATGTATATTAAAGTAACCACTGATACTGGACCTTAATGCagagtccacacacacacacacacttgcatatACACACTCTGACATGTTTGTGTGGTGTAAAAGCAGGTTAAGTGAAggacgctgccactatgagatTAGGAGAACAATGTAAGAGTCCACAATAGTgtcaggttgtgtgtgtgtgtgtgtttcaaagaaagtgtatacagtatatgattATTTCAGATAGTCTCGATCAAACAATATGAGCTATGAACCAAAGACAAGAAGCACTCCGTGTTCAATATGAAAAGGAGTATATAGCCATATCATCAATGTTTGAGGATAGgaagtgcgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgtacATTGTGTTCTAAGGTTGGCCGCTCTCACTGAACCACATGTGCCTTTGTTACTCTATGCAAATTCTTAGACCCATAAACTGTTCCCTGATCTCCTCACCCTTGCCCCTTGCAAGTTCATTTACACAATGCCAAGGAAACAAGCAGAGATTACTctttgttatgtgtgtgtgtatgtgtgtgtgttagtgtcagagagagtaagtgaggATCACAttggagacaaaaaaaaa

Function

symbol description
frmd6 Predicted to be involved in actomyosin structure organization. Predicted to be active in cytoskeleton. Orthologous to human FRMD6 (FERM domain containing 6).

NR:

description
PREDICTED: FERM domain-containing protein 6

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component

KEGG:

id description
K16822 FRMD6; FERM domain-containing protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015605668.2 True 3650 mRNA 0.49 15 13271416 13299019

Neighbor

gene id symbol gene type direction distance location
tmx1 tmx1,txnd1,LOC107705366,LOC107654918,LOC107602932,LOC107736746 coding upstream 68221 13197150 ~ 13203195 (+)
atl1 atl1,LOC107705445,LOC107736665,LOC107682422,LOC107602974,LOC107553217 coding upstream 203188 13051867 ~ 13068228 (+)
atp5s atp5s coding upstream 291849 12973611 ~ 12979567 (+)
LOC103045242 LOC103045242,LOC108426851,LOC108262946 coding upstream 566228 12696124 ~ 12705188 (+)
stk32c stk32c,LOC102790870,LOC107670801 coding upstream 591748 12551306 ~ 12679668 (+)
trnat-ugu_90 NA coding downstream 48542 13347561 ~ 13347633 (+)
abcb10 abcb10,LOC102798660 coding downstream 82854 13381873 ~ 13393037 (+)
LOC103031709 acta1,act2,LOC108430668,LOC102689871 coding downstream 98762 13397781 ~ 13401639 (+)
LOC103032026 ccsap coding downstream 104589 13403608 ~ 13409451 (+)
pdcd2 pdcd2 coding downstream 163310 13462329 ~ 13464974 (+)
G216073 LOC108263287,LOC108263288 non-coding upstream 33563 13205309 ~ 13237853 (+)
G216077 NA non-coding upstream 46311 13224809 ~ 13225105 (+)
G216064 pygl,LOC104938237 non-coding upstream 128025 13139244 ~ 13143391 (+)
G216059 NA non-coding upstream 138896 13127926 ~ 13132520 (+)
G216058 NA non-coding upstream 142458 13128294 ~ 13128958 (+)
G216100 NA non-coding downstream 2366 13301385 ~ 13302047 (+)
G216138 tbp,LOC107676577,LOC107725488,LOC107666436 non-coding downstream 166691 13465710 ~ 13471415 (+)
G216139 NA non-coding downstream 174360 13473379 ~ 13474113 (+)
G216141 NA non-coding downstream 176117 13475136 ~ 13475336 (+)
G216143 NA non-coding downstream 180725 13479744 ~ 13480026 (+)
G216053 nin other upstream 167374 13091746 ~ 13104042 (+)
G215886 NA other upstream 555511 12710638 ~ 12715905 (+)
G215834 NA other upstream 1065252 12205501 ~ 12206164 (+)
LOC111195936 NA other upstream 1658293 11610318 ~ 11613123 (+)
cpeb3 cpeb3,LOC106604870 other upstream 2075993 11125700 ~ 11195423 (+)
LOC103038358 NA other downstream 9018 13308037 ~ 13312487 (+)
trnay-gua_10 NA other downstream 16093 13315112 ~ 13315200 (+)
trnay-gua_11 NA other downstream 17056 13316075 ~ 13316162 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other downstream 180157 13479176 ~ 13484371 (+)
spef1 spef1 other downstream 441494 13740513 ~ 13750306 (+)

Expression


Co-expression Network