LOC103045248 (lrit1a,LOC108442250,LOC107585312,LOC107673966,LOC107716298,LOC107707479,LOC107588643)


Basic Information

Item Value
gene id LOC103045248
gene name lrit1a,LOC108442250,LOC107585312,LOC107673966,LOC107716298,LOC107707479,LOC107588643
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 17755968 ~ 17760796 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015605854.2
GACCTATTATAAACTGCTACGTCTCTGCTTAGCCTATCGGCTTCCAAGATGCAATACGCATCTAAATGAAAATAACGCGCGCGCTTTCACTAATCCCCCTCTATCCTTTTTATCTGCTGGACTGGCCGCACTCACATCACTATGGGACGCTGAGGCAGAGCGAGGACGACATGCTGCAGATATCTGGATAAAGCGCAGGAAGCTGTTTTTCTGAGTTCCTGACTGAGTTTCTGAGGGTCAGCTGCTGAAGAGCAGGAGGGGAATCATGGTGCTCGCGGTTTTTCTGGGGCTTTGGCTGGTTTCAGGGGAGTTCCAGCCGGTGTGGAGCTCCTGTCCCTCTCAGTGTAGCTGTTTCTACCACAGCCTGAGTGATGGATCCAGAGCCAGGAGTGTGATTTGTAATGATCCTGAGATTTCACTGGTGCCTGCCAGCTTCCCCGCTGACACCTCCAAACTCAGAATAGAAAAAACAGCCATCAAGAGGATTCCCAGCGAAGCTTTCAACTACCTCTCCAATCTGGAATTTCTGTGGATGTCCTTCAATGTGTTAGCATCCCTAAACACGGACAGTTTCCGCGGTCTGTACAGCCTggaggagctgaggctggatgGTAATTCCCTCACTACTTTTCCATGGGAATCGTTAATGGACATGCCCAGTCTGAGACTCCTCGACCTGCACAATAACCAGCTGTCCTCTGTCCCACCTGAGGCCACACTGTACATAAAAAACTTAACCTACCTGGACCTGTCCAGCAACAACCTGCTGACATTACCATCTGAAGTCCTGGCTACATGGTTGACAATCAAAGCTGTTCAAGGACTGGAGAGTTCAAAAATGATTCTGGGGCTCCATGACAATCCTTGGCTCTGTGACTGCCGACTCTACGACCTGGTCCAGTTCCAGAAGTCCCCGTCACTCTCCGTGGCCTTTATTGACACCAGACTGAGGTGCGCTGATCCTGAGAGTCTGTCGGGGGTTCTGTTTAGTGATGCAGAGCTGAGACGATGCCAGAGCCCCAGGGTTCATACGGCTGTAGCCCGGGTCAGGAGCGCAGTGGGCAACAACGTGCTGCTGCGTTGTGGCACCATCGGGGTCCCCATCCCTGAGCTGGCCTGGAGGAGAGCAGATGGAAAGCTACTGAATGGGACAGtTCAGCAAGAGAACTCTAAAGAGGGAATCGTTTGGTCTATTCTGAGCGTGCCTGCGGTTTCCTTCTACGACTCTGGGAAATACATCTGCAAAGCCACTAATTATGCTGGGAGTGCTGAAGCAGTTATTTCTCTGATCATAAGCGACtctccaaaaatggaaaatcaAACTGCAAATGCAAAGAAAGTCAAAGGAAAGAAGCCGGGCCCTGTTGTGAAGGCAGCTTATCAAGAAAAACTTATTGCCAGATATGTGTCTCCAAGACCCACTCCCGCCTCTGCTCTTGTAGCCCCTGTAGTTTACACTGGCCCTTATCCTGGCATGGACAGTGACAGTATTGCAGACAGTGGGACGAATGTTCAAACAACTGGTCCTGATGGACTCCTAGAAACCAATCTGAGCAATCTCGCAGCAAACACGTCGTCCCTGCAGCAAGACCCTGAGAGAGTGGTCCGCTCCGTCAAAGTAATCGGAGATACAGACTATACAGTGTGTCTGAACTGGCGAGCACCCAAGGCCAAGAACACCACGGCCTTCAGTGTGCTCTACGCTGTGTTTGGAGAGCGGGATATGCGACGAATTAATGTCAGTCCCGGCAACAACCGGATCCTCATCGAGGGCTTGGTTCCAAAAACCAAATACATTGCCTGTGTGTGCGTAAAAGGCCTGATCCCCAAAAAAGAGCAGTGCGTAATCTTCTCAACAGATGCGGCGGCAAGCGCTAATGGGACTCAAAAGCTCATTAATGTAGTTGTAATCACGGTTGCCTGTGTGATAGCCGTGCCTCTGACTGTGATCGTCTGCTGCGGGGCACTTAAGAGGAAAATCCAGAAATTTCTGGGCAAAAAGTCCAAAGACATTCCGGACTCATACGTGACGTTTGAGACCCTGTCCCCCAGCACCAAGGCTAAAGGTCTGGAGGGGGAATATCTGAACAGACTGAACCCAGAGGAGTCCAACAGACTGCTCTCAGCCAGGTCCAGCCTGGACTCTGAGTCCACCGCTAAGATTGAGGGACAGCCGAACGAATACTTCTGCTGACAATTTCCCTCAGCCACCGCTCCACCACACGGCCTAGGTATCCAGGCTCAGCCCCAGTATCTGAGTGCACACAATCTGTACCAGCAGTACCTCGCTGAGCATtcctaaatacaaatacaatctATATATGGATACCTATGGAGTTAGTAACTAAGGACACAATAGGAAGAGTCGTGAGTGGTTCTTCTTTGGATCATCAGCTGTGCTCTTTGTTACTACACTCATGGACTTAGTTTTACGACTAAGCCATACGGCTGGTGGTGGGGTTGTGGCTGAGCAATCCCGGgactaaacacatacacacatatacacacagacatatacacatgcacacaaacatgAACTTTACTGACCTTTATTTCAGATATTGATCCATGGTTAAAGGGAAACTGTCATTGACTAAGTGAATTGACTGACTGTATGTAAAgtactactgtatatatgtatatacatccagagtacattaaaaatatatattcctttCATCTTTACATTCCATGTAGTTTAAGCtttgtaaatacagtatattttagaaCCATCTTTAAATAGATTTCTGAAGTGAACTGATTAATTTGCACTAACTCAAGTAGTTTAATATAATGATACTTTTAGCAGTATTCTAATAATGTTGCTGAATAATAAAACTCTATGAGATTTTTAGATGTGGCAACATTTTTATCTGTATTCAGCTTTTTAGCATAAATGTGACCCATGTCAATGATTTATCCTGACAATTAAACTTTGTTAACTTTGTTTTATACCCCAAACCTCAATGTGTTTCATAATgtagaaataaagattttatatGAA

Function

symbol description
lrit1a Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human LRIT1 (leucine rich repeat, Ig-like and transmembrane domains 1).

NR:

description
PREDICTED: leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K24491 LRIT; leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015605854.2 True 3004 mRNA 0.47 4 17755968 17760796

Neighbor

gene id symbol gene type direction distance location
LOC103043721 ogdhl,LOC108442924,LOC107683740,LOC108263326,LOC107707496 coding upstream 55472 17677154 ~ 17700496 (+)
parg LOC107683745 coding upstream 83107 17633776 ~ 17672861 (+)
LOC103043107 LOC108442891,LOC108263542 coding upstream 123934 17579198 ~ 17632034 (+)
unc5b unc5b,LOC107588651,LOC107707543,LOC107688303 coding upstream 180782 17480411 ~ 17575186 (+)
LOC103040431 NA coding upstream 494396 17187141 ~ 17261572 (+)
LOC103045557 LOC108442258 coding downstream 530 17761326 ~ 17766791 (+)
LOC103046358 LOC108442959,LOC108262760 coding downstream 39945 17800741 ~ 17809379 (+)
cuedc2 cuedc2 coding downstream 381799 18142595 ~ 18149799 (+)
LOC103023375 LOC108443064,LOC108263659,LOC105910124 coding downstream 441542 18202338 ~ 18212333 (+)
LOC103023691 spock2,LOC108443083,LOC107668819,LOC108262742,LOC107673954 coding downstream 472413 18233209 ~ 18287507 (+)
G217222 NA non-coding upstream 360719 17395039 ~ 17395249 (+)
G217140 NA non-coding upstream 491537 17264130 ~ 17264431 (+)
G217122 pcgf6 non-coding upstream 695387 17058330 ~ 17060581 (+)
G217109 NA non-coding upstream 746170 17009574 ~ 17009798 (+)
LOC111196035 NA non-coding upstream 857574 16883025 ~ 16898394 (+)
G217313 NA non-coding downstream 15970 17776766 ~ 17777086 (+)
G217359 NA non-coding downstream 339158 18099954 ~ 18161772 (+)
G217362 NA non-coding downstream 356406 18117202 ~ 18124261 (+)
G217368 NA non-coding downstream 391405 18152201 ~ 18154348 (+)
G217369 NA non-coding downstream 393609 18154405 ~ 18158027 (+)
LOC111195981 tacc2 other upstream 571717 17149342 ~ 17184251 (+)
borcs7 borcs7 other upstream 748431 17004541 ~ 17007537 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other upstream 2975655 14722400 ~ 14780313 (+)
gsto1 gsto1 other upstream 3408635 14342232 ~ 14347333 (+)
spef1 spef1 other upstream 4005662 13740513 ~ 13750306 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other downstream 243457 18004253 ~ 18039352 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other downstream 551097 18311893 ~ 18317228 (+)
LOC103030769 LOC103030769 other downstream 982410 18743206 ~ 18744327 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other downstream 1076548 18837344 ~ 18847028 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other downstream 1399857 19160653 ~ 19216989 (+)

Expression


Co-expression Network