LOC103023691 (spock2,LOC108443083,LOC107668819,LOC108262742,LOC107673954)


Basic Information

Item Value
gene id LOC103023691
gene name spock2,LOC108443083,LOC107668819,LOC108262742,LOC107673954
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 18233209 ~ 18287507 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015605859.2
tctctctctctctctctcagcagtaagaagcagcagcagcagtatccTGTAATCAGGTCACATTTCAGCGGAGGCTcagcatcagtgtgtgtgtctgtgaggaGCTGAGGACGCTGTTCACCGCTCTGCGCTGCTGATCATCCCGTGTGAGGAGTCATGGTGCTGCTGAGGGTCATGGGGCGCCTACTCGTCCCGTTCGTGATGCTCGTGGGTGTTTCGGTTCAGGGCGACGTGAAGAGCGGGAAAGATGCGGAGAAGAGCGGGAATTTCATGGAAGACGAGCAGTGGCTGTCCACCATTTCCCAGTACAGCCGCAAGATCAAGCACTGGAACCGCTTCAGAGATGAAGTGGAGgaTGATTATATCAGATCATGGGATGGAAGTCAAGGCTCAAATGAAAATGTGGACACCACTAAAGACCCCTGCCAGAAGGTGAAGTGCAGCCGCCACAAGGTGTGTGTTGCCCAGGGCTACCAGcgtgctgtgtgtgtgaaccGCAAGAAGCTGGAGTACAGGTTGAAGGACCCAGCCCTGGGACAGCAGGAGAACAGCTGCAAGCCCTGCCCTGTGTCTGCTTCTGGACCTGTGTGCGGTTCTGATGGACATAATTATGCTTCTCAGTGTAAGCTGGAGCAGCAGGCATGTCTCACAGGGAAGGAGCTGAGTGTGAAGTGTGCCGGTTCCTGCCCATGTTCCCCCACAGCTGCGCCTAGCACAGAAACAGACAGCAAACACGAGAGCTGCACCGGCCAGGACCTGGCAGATTTGGGGGATCGCCTGCGGGACtggttccagctgctccagggCAACGCCAAGCAGAACAGCACGAGCAAGCCTGCAGCCAGCTCTGCATCAATTTTGGACCGCACTCTAGTGGCGACCTGCAAGGACTCCATCGGATGGATGTTCTCGAAGCTGGACACTAATAATGACCTGTATCTGGACCAGGCTGAGCTGGCTGCTATTAATCTGGACAAGTACGAAGTGTGTATTCGGCCTTTCTTCAACTCCTGTGATTCCTACCGTGATGGCAAAGTCACAACAGCCGAATGGTGCCTCTGCTTCTGGAGAGAGAAGCCTCCCTGCCTGGCTGAGCTAGAGAGGATCCAAATGCAGGAAGGAGCCAAGAAGAAGCTGGGTGCCTTCATTCCCAGCTGTGATGAGGACGGCTATTATAGGAAGCTGCAGTGCGACCAAAGTAGGGGGGAGTGCTGGTGCGTAGACCAGCATGGAGGAGAGCTAATGGGTTCCAGAATCCATGGCAACCCTGACTGTGATGAGGTAGCTGGTTACTCGGGTGATTTCGGCAGCGCTGTGGGCtgggaggacgaggaggagaAAGAATCAGAAGACAATGGTGAGGAGGCTGAAGAAGAGGAGGGGGAGGTGGGGGAAGTGGATGATGGTGGATACATCTGGTAGACCACATCACAAATGGCTGCATGGTCAAATATAGCTTTCCTCTGGCCACTGGTTCAGAGGCAGCTCCATCTCTTGCCGACACAAACCTGGTGGAACCTGGAGGGTTGGACATCTTTATACTGCACTCTGAACAACAGCATTGACTTGGGGGGATGGGGTGGCTGGGTAGTGATAGCTGTAGTGAAATTCTGGGTTTGGGGAAGAGTTTGAATAATGGTACTATAAATACTTGTGAAACATCTTTTCTTTTGTTGTATGTGCAAGAGTGTGCTCTCCTGATAACGTCTCTAGCATCAGCAGTCACAAGCTCAACTCTAGAAGCTCGATAAAAACGGACAAACTGGAGCTTAGCCCATGCTGTACAGTGCTTCATCTCATCTGTGACGTTGGACATGTTGTGCCAGAAGCATAACAactaaaatacacacatttaccgCTAAGTATTTGAAAAAGGTACATTTTAGCCTCAGCGTTTTAGGGTAGCCTACAGATCTGACTAATAAAACTGCAAGTGTAATAAGGTGGGAATGCTTCAAGCCTAATACATTTAGCCTAATTCTTTTGGAGTTGTCATTAGTGTTGTCCAAACAAGAACAATGTGAACTAGAGTCTGGTCACTTCAAACCATCGGTATGTAAATTTTTTGGACATAGATGTTAATTGAATTAATATTTTAGCAGCACTGTAACTTTTCTGATTAGGCCACAGCAGAACTAGAGCTCACTAGAGAACGAGAGCCAAAGGCTAGAGCCAAAATTACCCTGAAAGCTGCAGCCACATTTCTGACGACCTGGTTGCCAACACATTATCTGGCTACCAAAAGCCTCAACATAAATTGATAACACTGCAGAACCTGTCACAACAAGTTTAAGGCACAGTTAAGACTAGCTCTAATTGGACAGTATGGCCTTAACATTAATTCTTAATTTTCAGCGTAAGACGGTTCTTCAAGTGAACCAATACCTTTAAGGCTTTCCGGCTTcaacatatataatattaaatccCACCGAAACTGGATATACTAAAGCTTATTTCACTGTAAACACTTTTATGACACAGAACAACTCTGAACCCTCTCCAATACTTCGTGCTTTCTTAAATGAAATGGAGTCGCTGATCCTTTCGAATTCATTCTCCAGTCTCCGATTTCTCTCATAATGGAATCTGCTTAAGCGAAAGTAGTTTAAGCTGAAATGCATTACCTCTGATGTCACTATGAATACAAGTATGAATAGTAGTGTGGAGAATTTGCAACCTGACAATACTCCCACCCGCAGACACCCAGAGGGACCAGTCTGTCTTTTTTATCTGTCTGCTAAACAGATCCACCCTTCATCTATGGTGAAATATGAGTCTACTGTACTGTTACTAGGTGTAAATATTTCTGCTGCAAGGGTTTTAAGTCTTGGTTTACAGCGCAAACAAAAATCCATTCATGTACCACACACTCCTCGCCGTAAGACACTCCACTCTTAGTGTAAGCGCCATTTCCGTGTTTTTTGGGATAGAAATTTGTCTTCGCAGGTTTCAGGATGACTATGGTGTTGGTTCATCTAGAAATCATCATGCTCCAGTGATTTCATGCATACAAAAATACTTGAGGCATTTGCAGTAAACACTGTGCAATTAGTGTCGCCCACTGAAACAATGATGCCATACTTAGACATCCCCCTGAGAGCCCAGCTCTGAAGAAtgcctttctctgtctctgctcACCACCAAGGACATTAGGGTTGCACGTAATACTTTACATGCAGAGCTTAAGTGAGGATGAATTATAGATTTTATCTGGTACGGTAATGCATTCAGATAGACCCAGGCTGGAAGCTTTAAGTAAGTTTTGGAGAATGcatcttatttaatgtttttttttttcttctcagaaATAAAAAGGTTCAGCAGGAAGGTGTAAATCAGTTGACTTTTTTCCAAATATACAGCTAATATTCGTCCATTgacagtgagtgtgtttatgtgcacttCATAATCCTTACTGATTAAGTATTTCTCAATACCCTTATAAGGAGTAATCCCAGATTTCTCAATCTGTGCATGCACGAAAACAGACCCTGGTagcaaaaataaacaagcaGCATTGATGGCAACACTTTAGAGGCAATGCTAAAACTCAAGGATTTAAATAATCTTCATCTTCTAGCTGACTGTGTGTTCATAATGTGTCTCAATGTGttgaataaaaatgtgaattttgtgttttacttaAAGTTTGTCACATCTTTTTCTGTAAGATTAATGGCTGGTTGCATTAATCTGATCCGATTATTGACCCAGTTTTCCAATTATCTGTTGATACAAGTTCTCagatgttctgcagtaatcagattatgaaatGCATGTAAACGCACTCAATGACAATATGTTATGAAGAACCTCAGATAAGGTGTTCGATTCGTTTAGAAGACAGTCTCACAAGTAGTCAGATTGTGAGATCACTGCTTTCATGTCTTTCTCAACAGTGCCACATCTGATGCTCTTCAATGTGGATTTGCTAGCCTATGATTATACTGATCTGTAAACACCATTATTGTCAATACTTGGATTCTAAAGATGAAGTGTATTTGCCCTGGCAGTTGCATTATATTTGCATTTAGTTGCATGTTTTTGTCCAGAATTGTCATCTTTTGCCTCAGTATGATTATAATTAAAGGCATTGGGCCCACATACTGTA
>XM_015605860.2
tctctctctctctctctcagcagtaagaagcagcagcagcagtatccTGTAATCAGGTCACATTTCAGCGGAGGCTcagcatcagtgtgtgtgtctgtgaggaGCTGAGGACGCTGTTCACCGCTCTGCGCTGCTGATCATCCCGTGTGAGGAGTCATGGTGCTGCTGAGGGTCATGGGGCGCCTACTCGTCCCGTTCGTGATGCTCGTGGGTGTTTCGGTTCAGGGCGACGTGAAGAGCGGGAAAGATGCGGAGAAGAGCGGGAATTTCATGGAAGACGAGCAGTGGCTGTCCACCATTTCCCAGTACAGCCGCAAGATCAAGCACTGGAACCGCTTCAGAGATgaTGATTATATCAGATCATGGGATGGAAGTCAAGGCTCAAATGAAAATGTGGACACCACTAAAGACCCCTGCCAGAAGGTGAAGTGCAGCCGCCACAAGGTGTGTGTTGCCCAGGGCTACCAGcgtgctgtgtgtgtgaaccGCAAGAAGCTGGAGTACAGGTTGAAGGACCCAGCCCTGGGACAGCAGGAGAACAGCTGCAAGCCCTGCCCTGTGTCTGCTTCTGGACCTGTGTGCGGTTCTGATGGACATAATTATGCTTCTCAGTGTAAGCTGGAGCAGCAGGCATGTCTCACAGGGAAGGAGCTGAGTGTGAAGTGTGCCGGTTCCTGCCCATGTTCCCCCACAGCTGCGCCTAGCACAGAAACAGACAGCAAACACGAGAGCTGCACCGGCCAGGACCTGGCAGATTTGGGGGATCGCCTGCGGGACtggttccagctgctccagggCAACGCCAAGCAGAACAGCACGAGCAAGCCTGCAGCCAGCTCTGCATCAATTTTGGACCGCACTCTAGTGGCGACCTGCAAGGACTCCATCGGATGGATGTTCTCGAAGCTGGACACTAATAATGACCTGTATCTGGACCAGGCTGAGCTGGCTGCTATTAATCTGGACAAGTACGAAGTGTGTATTCGGCCTTTCTTCAACTCCTGTGATTCCTACCGTGATGGCAAAGTCACAACAGCCGAATGGTGCCTCTGCTTCTGGAGAGAGAAGCCTCCCTGCCTGGCTGAGCTAGAGAGGATCCAAATGCAGGAAGGAGCCAAGAAGAAGCTGGGTGCCTTCATTCCCAGCTGTGATGAGGACGGCTATTATAGGAAGCTGCAGTGCGACCAAAGTAGGGGGGAGTGCTGGTGCGTAGACCAGCATGGAGGAGAGCTAATGGGTTCCAGAATCCATGGCAACCCTGACTGTGATGAGGTAGCTGGTTACTCGGGTGATTTCGGCAGCGCTGTGGGCtgggaggacgaggaggagaAAGAATCAGAAGACAATGGTGAGGAGGCTGAAGAAGAGGAGGGGGAGGTGGGGGAAGTGGATGATGGTGGATACATCTGGTAGACCACATCACAAATGGCTGCATGGTCAAATATAGCTTTCCTCTGGCCACTGGTTCAGAGGCAGCTCCATCTCTTGCCGACACAAACCTGGTGGAACCTGGAGGGTTGGACATCTTTATACTGCACTCTGAACAACAGCATTGACTTGGGGGGATGGGGTGGCTGGGTAGTGATAGCTGTAGTGAAATTCTGGGTTTGGGGAAGAGTTTGAATAATGGTACTATAAATACTTGTGAAACATCTTTTCTTTTGTTGTATGTGCAAGAGTGTGCTCTCCTGATAACGTCTCTAGCATCAGCAGTCACAAGCTCAACTCTAGAAGCTCGATAAAAACGGACAAACTGGAGCTTAGCCCATGCTGTACAGTGCTTCATCTCATCTGTGACGTTGGACATGTTGTGCCAGAAGCATAACAactaaaatacacacatttaccgCTAAGTATTTGAAAAAGGTACATTTTAGCCTCAGCGTTTTAGGGTAGCCTACAGATCTGACTAATAAAACTGCAAGTGTAATAAGGTGGGAATGCTTCAAGCCTAATACATTTAGCCTAATTCTTTTGGAGTTGTCATTAGTGTTGTCCAAACAAGAACAATGTGAACTAGAGTCTGGTCACTTCAAACCATCGGTATGTAAATTTTTTGGACATAGATGTTAATTGAATTAATATTTTAGCAGCACTGTAACTTTTCTGATTAGGCCACAGCAGAACTAGAGCTCACTAGAGAACGAGAGCCAAAGGCTAGAGCCAAAATTACCCTGAAAGCTGCAGCCACATTTCTGACGACCTGGTTGCCAACACATTATCTGGCTACCAAAAGCCTCAACATAAATTGATAACACTGCAGAACCTGTCACAACAAGTTTAAGGCACAGTTAAGACTAGCTCTAATTGGACAGTATGGCCTTAACATTAATTCTTAATTTTCAGCGTAAGACGGTTCTTCAAGTGAACCAATACCTTTAAGGCTTTCCGGCTTcaacatatataatattaaatccCACCGAAACTGGATATACTAAAGCTTATTTCACTGTAAACACTTTTATGACACAGAACAACTCTGAACCCTCTCCAATACTTCGTGCTTTCTTAAATGAAATGGAGTCGCTGATCCTTTCGAATTCATTCTCCAGTCTCCGATTTCTCTCATAATGGAATCTGCTTAAGCGAAAGTAGTTTAAGCTGAAATGCATTACCTCTGATGTCACTATGAATACAAGTATGAATAGTAGTGTGGAGAATTTGCAACCTGACAATACTCCCACCCGCAGACACCCAGAGGGACCAGTCTGTCTTTTTTATCTGTCTGCTAAACAGATCCACCCTTCATCTATGGTGAAATATGAGTCTACTGTACTGTTACTAGGTGTAAATATTTCTGCTGCAAGGGTTTTAAGTCTTGGTTTACAGCGCAAACAAAAATCCATTCATGTACCACACACTCCTCGCCGTAAGACACTCCACTCTTAGTGTAAGCGCCATTTCCGTGTTTTTTGGGATAGAAATTTGTCTTCGCAGGTTTCAGGATGACTATGGTGTTGGTTCATCTAGAAATCATCATGCTCCAGTGATTTCATGCATACAAAAATACTTGAGGCATTTGCAGTAAACACTGTGCAATTAGTGTCGCCCACTGAAACAATGATGCCATACTTAGACATCCCCCTGAGAGCCCAGCTCTGAAGAAtgcctttctctgtctctgctcACCACCAAGGACATTAGGGTTGCACGTAATACTTTACATGCAGAGCTTAAGTGAGGATGAATTATAGATTTTATCTGGTACGGTAATGCATTCAGATAGACCCAGGCTGGAAGCTTTAAGTAAGTTTTGGAGAATGcatcttatttaatgtttttttttttcttctcagaaATAAAAAGGTTCAGCAGGAAGGTGTAAATCAGTTGACTTTTTTCCAAATATACAGCTAATATTCGTCCATTgacagtgagtgtgtttatgtgcacttCATAATCCTTACTGATTAAGTATTTCTCAATACCCTTATAAGGAGTAATCCCAGATTTCTCAATCTGTGCATGCACGAAAACAGACCCTGGTagcaaaaataaacaagcaGCATTGATGGCAACACTTTAGAGGCAATGCTAAAACTCAAGGATTTAAATAATCTTCATCTTCTAGCTGACTGTGTGTTCATAATGTGTCTCAATGTGttgaataaaaatgtgaattttgtgttttacttaAAGTTTGTCACATCTTTTTCTGTAAGATTAATGGCTGGTTGCATTAATCTGATCCGATTATTGACCCAGTTTTCCAATTATCTGTTGATACAAGTTCTCagatgttctgcagtaatcagattatgaaatGCATGTAAACGCACTCAATGACAATATGTTATGAAGAACCTCAGATAAGGTGTTCGATTCGTTTAGAAGACAGTCTCACAAGTAGTCAGATTGTGAGATCACTGCTTTCATGTCTTTCTCAACAGTGCCACATCTGATGCTCTTCAATGTGGATTTGCTAGCCTATGATTATACTGATCTGTAAACACCATTATTGTCAATACTTGGATTCTAAAGATGAAGTGTATTTGCCCTGGCAGTTGCATTATATTTGCATTTAGTTGCATGTTTTTGTCCAGAATTGTCATCTTTTGCCTCAGTATGATTATAATTAAAGGCATTGGGCCCACATACTGTA

Function

symbol description
spock2 Predicted to enable calcium ion binding activity. Predicted to be located in extracellular region. Is expressed in brain and peripheral olfactory organ. Orthologous to human SPOCK2 (SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2).

NR:

description
PREDICTED: testican-2-like

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K08136 SPOCK; testican

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015605859.2 True 4111 mRNA 0.45 11 18233209 18287507
XM_015605860.2 False 4102 mRNA 0.45 10 18233209 18287507

Neighbor

gene id symbol gene type direction distance location
LOC103023375 LOC108443064,LOC108263659,LOC105910124 coding upstream 20876 18202338 ~ 18212333 (+)
cuedc2 cuedc2 coding upstream 83410 18142595 ~ 18149799 (+)
LOC103046358 LOC108442959,LOC108262760 coding upstream 423830 17800741 ~ 17809379 (+)
LOC103045557 LOC108442258 coding upstream 466418 17761326 ~ 17766791 (+)
LOC103045248 lrit1a,LOC108442250,LOC107585312,LOC107673966,LOC107716298,LOC107707479,LOC107588643 coding upstream 472413 17755968 ~ 17760796 (+)
LOC103025593 LOC108443100,LOC108263458 coding downstream 35083 18322590 ~ 18337821 (+)
rps24 LOC102780737 coding downstream 62233 18349740 ~ 18353030 (+)
LOC103028339 LOC108443181 coding downstream 89141 18376648 ~ 18634603 (+)
LOC103029282 ppifa,LOC108442288,LOC107588732,LOC107668776,LOC108263515,LOC107564349,LOC107673899,LOC105909881 coding downstream 348561 18636068 ~ 18640875 (+)
c25h10orf10 LOC103031081 coding downstream 444090 18731597 ~ 18732521 (+)
G217364 NA non-coding upstream 12640 18187590 ~ 18220569 (+)
G217361 hif1an non-coding upstream 65309 18163382 ~ 18167900 (+)
G217359 NA non-coding upstream 71437 18099954 ~ 18161772 (+)
G217420 NA non-coding downstream 136323 18423830 ~ 18424763 (+)
G217431 zcchc24,LOC107564348,LOC106608383 non-coding downstream 394455 18681962 ~ 18689693 (+)
G217433 NA non-coding downstream 400865 18688372 ~ 18695794 (+)
G217435 NA non-coding downstream 410486 18697993 ~ 18699151 (+)
G217438 NA non-coding downstream 426544 18714051 ~ 18714310 (+)
pax2 pax2,pax2a,LOC107668824,LOC101463634,LOC107588637,LOC107716343,LOC107585307 other upstream 193857 18004253 ~ 18039352 (+)
LOC111195981 tacc2 other upstream 1048958 17149342 ~ 17184251 (+)
borcs7 borcs7 other upstream 1225672 17004541 ~ 17007537 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other upstream 3452896 14722400 ~ 14780313 (+)
gsto1 gsto1 other upstream 3885876 14342232 ~ 14347333 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107716353,LOC107668794,LOC107673927 other downstream 24386 18311893 ~ 18317228 (+)
LOC103030769 LOC103030769 other downstream 455699 18743206 ~ 18744327 (+)
cxcl12 cxcl12,cxcl12a,LOC107707253,LOC107673912,LOC106604225,LOC107588617,LOC107548639 other downstream 549837 18837344 ~ 18847028 (+)
LOC103040131 ptpn20,LOC108443401,LOC102205930,LOC108262844 other downstream 873146 19160653 ~ 19216989 (+)
rrp12 rrp12,LOC106529656 other downstream 1036399 19323906 ~ 19345404 (+)

Expression


Co-expression Network