LOC103029746 (LOC103029746)


Basic Information

Item Value
gene id LOC103029746
gene name LOC103029746
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 8238862 ~ 8243702 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015607564.2
CCCACCGTCTCTTCTCTCTCGGTGTAACAGTATTTTAGTTCCCCATCACAAAGACAGAGCACAGCCTGGATAAGAACGAACTTTCAGCCTTCTCTCTGCGCGGACACGGACTTTTATTGCTGTAGCTAAAGCAGCtgagttattagatttaggtgcatgttattgctgtttttttattataattttgtgGGGCAGCCCAGAAATAAACAGCTAAGtataggttagctagctagctaatgagGTATTGTGTACGGTAGCTTGAGTGGCTAGCTGTAGCTAGCTagggttagcatagctagctggctaattaACAATATCTGCATATGATATTACGTAAAATAGGTTCAGGCAAAGGTTTAGATCTAAAGCTAAATTGATTATTAAGACTGTAGGCTAAGaaccttagctagctaacttagctagctagagCTAGCAAACCAACCGTGTGTGTATTCATGCTATCTAATGCTAGCTGGCTAACCTAGCTAGGGGTTAACGGACACAAACAGTGGTCCCACACATAAAGAGGGCCCTGAAACCAGTTTACCACTTGGTTTAAATCGTATCCAGCTCAGTTAACGCTAGTTCATTAATTAATCAGCACCTCCACCACGTTTAACACAGCGCTCAGGATGTCTGAGATCATCCCCACGTTTCAGACGCAGCTCTCCGGCGTTATGGAGACCGTTTTTAAGGCTGCTATCTTCGAGATCaccaggctggtggaggagagcttTCTGGAAGAAGTGTCTCGATCACGAGAACAGGTTGAGTCTCTAAAAAAGAGACTCCAGTGGTCCGAGACCAAGCGCAAAGACCAGCAGGAGAGCAGGAGGCTGAGGTGTGCAGACTGTGGTAATGCCAGGCTGTCTGAGGAAGGGAAGAGCAAggcagcctcacacacacaaacagATGTGGAAAATgctcaaaaacttaaaaaggaGAGAGATGCGGAAGAGAATTGGAAGAGCTGTGAATCAGCTGAGAAGAAGGTTAATCTTCCTGTAAATGTGGAATCTGAGGCTGTATCCAACCAAATGAAACCTGCAGAGAATGCAGCTCAAGAGGAAGGAAAGATGGACTGCTTGCTTAAAGCGGAAGCTGTTCAAACTGGCAATGAGCCACAGGGTGGGTGGAGACTGACCCCTGAAGTTGAAGAAATTTCTGACAGCTCTGATCATCGTAAGACCTACAGTGAGCAGGAGTTGCAGCAGATTCAAGATGACTGGAGTTCAGGCTTGGGTCATGCTCCTGAACCAGACCCTGTTCCTGAACAAGACAATATTCAGGGTCTACAGTATAGGACTCGCTACAACATGGAGGACCTGAGCAGTTATGGAAATCAGGAGCTGGATATGGGAGCATTGAATGGATTAGCAGAGTCCACTCAAAGGAGTGGAGaggttttgggatttggggcaCTGCCTGCTTCTTTGCAGACTGACATGGGTACGCCTGCAGAAAGTGGAAGACGCTTGAGAAATAAGAGAGGACAAAAAGGATCTACATCTTTACATAATAGCCAAGACACAGCTGACCTGAACTGCTTACTTATTAATGAGGAGGGATATTTGCAGGACATAAATGCTCTTCCACAGGTTCCTGGTGGACTTATTGGAGACTCTGGACATCGGGCACATCCCATGTTCAGCAGAGATGCAGTAAATGACAGtaataattgtttttacagCGGAGATGCATTTAGCCACCCAGTGGACCTGAACCACAGCGAATCTGTGCAAATGGTTGCTGAGAGAAATAAACCGTCTCACACTTGTCCTCAGTGTATGCTGAGTTTTCCAGACCAGCGGTCTTTAAAGGCCCACATGGTCTCTCATCGGCCCAACCCTGGCTACATCTGCAACCAGTGTGGGAAGAAGTTCACCCAAGCCTGCAACCTGAAAGTCCACCAGCGTGTCCACCAGCGGGAAGGGCTGCACCTGTGCAATCACTGTGGGAAAGGCTACTCGTCTTTCAGCGACCTGCGGAAGCACCGGTGCAGCCAGGCCGGAGACAAGCCCTACAGCTGCTCGCTCTGCGGTAACAAGTTCAGCCGCCTTTGGAAcctcaagctgcaccgccgcaTTCACACGCAGGAGAAACCGCACCGATGCAGCATGTGTGACAAAAGCTTTACCCGGGCCGACATCTTAAAAGTCCACCAGCGGACACACACTGGAGAGAGGCCGTACTGCTGCAGGGTGTGTGGACTCAGCTTTAAACGTCTCGATCATCTCAGATCGCACCAGCGCAAACATGGATCAGTACCGAATAATCACTAGAACTGCAGTTCTAGGACCTATACACTAATTCAGCTTCAGAGTTATTGCCGTATACTATTAACCAGGGCTTTTCAGTTCTGATCCTGAGGACCAGTGTTTGTAACATTTTGCTGACTGTCCTACTCAAATCACCTAATCCAATCTGTTAATTGCCAGGtttcttgtttatatttataaaggaaaCAGTGCTGAACATTGGTCACCCAGTTTTGGAATTGGGGAACCCAACTATTCAACCAGGGTTTTGATTCAAAGGGGGCTTAATTCAAAAGCCATTATCACAGTCACAATAAATGACAAGCTACCCCTCTTTTCTATTCCTTCTGAATTGATAATAAAGTTCACTAATTGTTCAAAATGTCTGCGAAATTTAATTGCAGATTCAGAAAACGTTGTTGTATAATGTGTAATGTATAATTAATATTGCATATATTAAAACGGCATGTGTACGTTTATTGGTGGTATATTGCTGGTAAATTTGGGACCCCTGggggaagaaaacaaaaaaaatagtaattttctCATCAGATCAGACAACCAAAAACATATGCAGAAATTCTGAAAAGTGGGTTGCTTTAAAATCGCTGTCAGATTGGCagactttatatatttatattagtagtTGGTCACTATTTATAACACACACAGGGCTCCTGGACCATACTATTAaaatccactgtgttttaaattaGCTCAGAATTGATTCCCATAGGGATTTTATTTTTGGTCAAATGAACACAAATACAGTTATGTTACCGATATATTATtgtattctaatattttttaataagtgCATTGGATTGTCACTGTCTTTACACCCCAACCAGACTATTTTTTCCTTTAGTTGACTTCAGATAATCTTGTTTTCCAGTAAATAAATCATTTCTTTGTTCAACATTTTGCTTATGTCATGTCAACTTAGTATAGAACATGGTTTTAGTAACTGTGTAGTCAGGTATGTTCTGGTTTTCTAGGGACGCTGCAGTGCCTCTGTACCTGCTTTGTTTTGCTAATTGAGATGAtcttatttaataatgtttgtGAATTCATCATAGTCAGTCATGTCtaaagtttgtgtgttttatatgtaaaatatttttcttttatttaaattgtgatGGTTGTGGATAAAAGCTGATGCTTTTTCTGaatgcaaataaaaagtttACCTTTCA

Function

NR:

description
zinc finger and SCAN domain-containing protein 12-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015607564.2 True 3457 mRNA 0.43 4 8238862 8243702

Neighbor

gene id symbol gene type direction distance location
LOC103035882 NA coding upstream 11638 8209706 ~ 8227224 (+)
LOC103029427 LOC108434779 coding upstream 32755 8183415 ~ 8206107 (+)
slc43a3 slc43a3 coding upstream 111574 8115079 ~ 8127288 (+)
LOC103028482 LOC108434761,LOC105891496,LOC106611657,LOC101069382,LOC108243062,LOC106594846,LOC106604652 coding upstream 209691 8020649 ~ 8029171 (+)
tmx2 tmx2,LOC108412483,LOC105022872,LOC107664575 coding upstream 346364 7883194 ~ 7892498 (+)
LOC107197794 LOC108434776,LOC106930291,LOC102224490,LOC103132489,LOC106944652,LOC105931504,LOC103464124,LOC107393648,LOC106518818 coding downstream 1861 8245563 ~ 8252571 (+)
LOC103036505 LOC107556808,LOC107556784 coding downstream 10882 8254584 ~ 8266613 (+)
galnt2 galnt2,LOC107725470,LOC107676591,LOC107666462,LOC107743534 coding downstream 62540 8306242 ~ 8453818 (+)
cog2 cog2,LOC107601846,LOC107725477,LOC107552949,LOC107666500,LOC107743537 coding downstream 270656 8514358 ~ 8530448 (+)
phactr2 phactr2 coding downstream 297263 8540965 ~ 8649769 (+)
G214704 ctnnd1 non-coding upstream 153585 8074834 ~ 8085277 (+)
LOC111195956 NA non-coding upstream 309697 7927113 ~ 7929165 (+)
G214684 NA non-coding upstream 312358 7899502 ~ 7926504 (+)
G214686 NA non-coding upstream 331095 7905695 ~ 7907767 (+)
G214670 NA non-coding upstream 388429 7849697 ~ 7850433 (+)
G214853 NA non-coding downstream 211042 8454744 ~ 8456163 (+)
G214868 NA non-coding downstream 372391 8616093 ~ 8658455 (+)
G214875 NA non-coding downstream 454226 8697928 ~ 8699697 (+)
G214881 NA non-coding downstream 475121 8718823 ~ 8722998 (+)
G214942 NA non-coding downstream 594852 8838554 ~ 8841483 (+)
G214773 NA other upstream 127537 8110948 ~ 8111325 (+)
LOC103021346 LOC108412479 other upstream 361744 7856162 ~ 7877118 (+)
pold4 NA other upstream 425826 7810978 ~ 7813036 (+)
LOC111196031 NA other upstream 1829794 6399076 ~ 6409068 (+)
G214175 NA other upstream 1954494 6283781 ~ 6284368 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other downstream 714597 8958299 ~ 9030598 (+)
sprn sprn other downstream 2331793 10575495 ~ 10583088 (+)
G215513 polr1b other downstream 2703377 10947079 ~ 10948287 (+)
cpeb3 cpeb3,LOC106604870 other downstream 2881998 11125700 ~ 11195423 (+)
LOC111195936 NA other downstream 3366616 11610318 ~ 11613123 (+)

Expression


Co-expression Network