LOC111195931


Basic Information

Item Value
gene id LOC111195931
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 6104774 ~ 6110266 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684418.1
ATGAACATCGCTGATGAGCTTTTCATCACACTTAACCAAGAACTGTTCAGAAATGCTACAAGCAACAACCCTTGGACAGCATATATGAACTACATCTACATTTCTGTTTATGGAATCAATTTTGTTGTTGGCTTACCGATCAATACCTATGTCTTGTGGCTGATTTTCACAGGAAAAGGAAGAGGAGTCGTGTCAGAGTTTTTCAGCCTCAATCTAACGATCTaTTTCATTCTTTTACCTGGAGAAGTGGTGTACAGTCTGAAGATGAATGTCTCGGATGAACTTTCAGACACACTCATCTTATACATCGCGGTTGTGTCTGAGTTTTTCAGCCTCAATCTGACTGTTAACGAGATGCTCATCTGCATACGCTGTTTGTTCTACGTTCTTAGTTTTGTCTGTTCAGCACTTACACCATTAGTAGTTTTCATGGGGGGAGGATATATCTTTGGCCgtcctctgtttctctgtatgatCTGTGTGGAGCGTTACATGGCGGTGGTCCATCCTGTCACTTTCCTGAAGTACAAGCCTCTGAGATACAGGCTGgcatgttctgctgctgcatgGATGGGAGTTCTTGGCTTTTGCGTGCTCTGTATGTTCATTTCCTTAAATGTCTCTGACATGTTTCTTTCTGTTATCCTGCCAGTTTTGTCAGTTTTCCTCATTATTAAACTCTTCTGCTGTTCAGCTGTAGTCAGGGCACTGAAGCATCCAGGACCAGGACAgaaagggaaggagagagatgaGGCTAATCAGGCAAAGAGAAAAGCAGTTAGCATAATTCTGATAATCACAGTGACCACTGTTATTCAGTATTGCCCTGTAATTTTAACAGCACCTTTTCGCAATTTTATGCCAAGGAACCACTTTAATATACTCTGGGCCATTAGTTGTGCAATCTCATTGTTTTTTGGATATGTTCATGCTTTCCTTTACATCTGTAGAGCTGGATGCTTAAAAATCTCGCAGCAATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684418.1 True 981 mRNA 0.41 2 6104774 6110266

Neighbor

gene id symbol gene type direction distance location
lrpap1 lrpap1,LOC107749950,LOC107714242,LOC107551171,LOC107674255,LOC107556528 coding upstream 400925 5689706 ~ 5703849 (+)
LOC111195958 NA coding upstream 644270 5459757 ~ 5460504 (+)
LOC103044852 LOC108434764,LOC107671567 coding upstream 677009 5415209 ~ 5427765 (+)
LOC103034165 LOC108434807 coding upstream 695272 5401342 ~ 5409502 (+)
LOC103035563 LOC108263533,LOC108434806,LOC107712022,LOC107737080,LOC107671368 coding upstream 708654 5373278 ~ 5396120 (+)
LOC103039918 NA coding downstream 40422 6150688 ~ 6159645 (+)
LOC111195932 NA coding downstream 69984 6180250 ~ 6184176 (+)
LOC103039606 paip2b,LOC103039606,LOC107551309,LOC107674237,LOC108263850,LOC108426126 coding downstream 182844 6293110 ~ 6299551 (+)
LOC103039100 NA coding downstream 192450 6302716 ~ 6312607 (+)
LOC103038786 LOC103368813 coding downstream 204586 6314852 ~ 6324230 (+)
LOC111195966 NA non-coding upstream 17177 6086759 ~ 6087597 (+)
G214126 NA non-coding upstream 18273 6086241 ~ 6086501 (+)
G214125 NA non-coding upstream 35020 6069424 ~ 6069754 (+)
G214121 NA non-coding upstream 67569 6035494 ~ 6037205 (+)
G214046 NA non-coding upstream 295374 5752918 ~ 5809400 (+)
G214134 NA non-coding downstream 2337 6112603 ~ 6113010 (+)
LOC111195955 NA non-coding downstream 108120 6218386 ~ 6235720 (+)
G214174 NA non-coding downstream 165448 6275714 ~ 6275923 (+)
G214215 NA non-coding downstream 270678 6380944 ~ 6473744 (+)
G214227 NA non-coding downstream 359207 6469473 ~ 6470200 (+)
G214006 NA other upstream 583099 5521184 ~ 5521675 (+)
LOC103034491 scoc,LOC103034491,LOC108434805,LOC107674238,LOC108263532,LOC103132857,LOC103463814,LOC106946201 other upstream 745042 5349167 ~ 5359732 (+)
G213891 NA other upstream 930678 5173069 ~ 5174096 (+)
tbc1d9 tbc1d9,LOC107598515,LOC107594295 other upstream 1514322 4510939 ~ 4590452 (+)
G213715 znf330 other upstream 1675812 4398585 ~ 4428962 (+)
G214175 NA other downstream 173515 6283781 ~ 6284368 (+)
LOC111196031 NA other downstream 288810 6399076 ~ 6409068 (+)
pold4 NA other downstream 1700712 7810978 ~ 7813036 (+)
LOC103021346 LOC108412479 other downstream 1745896 7856162 ~ 7877118 (+)
G214773 NA other downstream 2000682 8110948 ~ 8111325 (+)

Expression


Co-expression Network