LOC111195932


Basic Information

Item Value
gene id LOC111195932
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 6180250 ~ 6184176 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684419.1
ATGAACGTCTCTGATGAGCTTTCCAGCACACCCATATCAAacctgtttaaaaatgaaacaagcAAGAATCCTTGGGCAGAATACACACGCCCCATGTACGTTCCTCTTTATCTAATCAATTTTGTTGTGGGTTTACCGATCAATTCCTACGTCTTGTGGCTTATTTTGATGAGTAAAGGAAGTGCAGTGGTGTCTGAGTTTTTCGGCCTCAATCTGACTGTTAACGAGATGTTCATCTGCATACGCTGTTTGTTCTATGTTCTTAGTTTTGTCTGTTTAGAATTTACACCATTAGTAGGTTTCATGGGGGGAGTATTCATCTGCAGCCgtcctctgtttctctgtatgatCTGTGTGGAGCGTTACATGGCGGTGGTCCATCCTGTCACTTTCCTGAAGTACAAGCCTCTGAGATACAGGCTGgcatgttctgctgctgcatgGACGGGAGTTCTTGGCTATTGCATGCTCTATGTGTTCATTCCCTCAAATGTCAATTACATCTTTATTTATACTATCCTGCCACTTTGGTCAGTTTTTCTCATTATTAAACTCTTCTGCTGTTCAGCTGTAGTCAGGGCACTGAAGCATCCAGGACCAGGTCAgaaagggaaggagagagatgaGGCTAATCAGatttcatattttatcGTGAGAAGGGGTGTGCACTCTGAAGATGAACGTCTCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684419.1 True 690 mRNA 0.43 2 6180250 6184176

Neighbor

gene id symbol gene type direction distance location
LOC103039918 NA coding upstream 20605 6150688 ~ 6159645 (+)
LOC111195931 NA coding upstream 69984 6104774 ~ 6110266 (+)
lrpap1 lrpap1,LOC107749950,LOC107714242,LOC107551171,LOC107674255,LOC107556528 coding upstream 476401 5689706 ~ 5703849 (+)
LOC111195958 NA coding upstream 719746 5459757 ~ 5460504 (+)
LOC103044852 LOC108434764,LOC107671567 coding upstream 752485 5415209 ~ 5427765 (+)
LOC103039606 paip2b,LOC103039606,LOC107551309,LOC107674237,LOC108263850,LOC108426126 coding downstream 108934 6293110 ~ 6299551 (+)
LOC103039100 NA coding downstream 118540 6302716 ~ 6312607 (+)
LOC103038786 LOC103368813 coding downstream 130676 6314852 ~ 6324230 (+)
trnak-cuu_9 NA coding downstream 141809 6325985 ~ 6326057 (+)
LOC103036975 NA coding downstream 203328 6387504 ~ 6398481 (+)
G214134 NA non-coding upstream 67240 6112603 ~ 6113010 (+)
LOC111195966 NA non-coding upstream 92653 6086759 ~ 6087597 (+)
G214126 NA non-coding upstream 93749 6086241 ~ 6086501 (+)
G214125 NA non-coding upstream 110496 6069424 ~ 6069754 (+)
G214121 NA non-coding upstream 143045 6035494 ~ 6037205 (+)
LOC111195955 NA non-coding downstream 34210 6218386 ~ 6235720 (+)
G214174 NA non-coding downstream 91538 6275714 ~ 6275923 (+)
G214215 NA non-coding downstream 196768 6380944 ~ 6473744 (+)
G214227 NA non-coding downstream 285297 6469473 ~ 6470200 (+)
G214283 NA non-coding downstream 397118 6581294 ~ 6581733 (+)
G214006 NA other upstream 658575 5521184 ~ 5521675 (+)
LOC103034491 scoc,LOC103034491,LOC108434805,LOC107674238,LOC108263532,LOC103132857,LOC103463814,LOC106946201 other upstream 820518 5349167 ~ 5359732 (+)
G213891 NA other upstream 1006154 5173069 ~ 5174096 (+)
tbc1d9 tbc1d9,LOC107598515,LOC107594295 other upstream 1589798 4510939 ~ 4590452 (+)
G213715 znf330 other upstream 1751288 4398585 ~ 4428962 (+)
G214175 NA other downstream 99605 6283781 ~ 6284368 (+)
LOC111196031 NA other downstream 214900 6399076 ~ 6409068 (+)
pold4 NA other downstream 1626802 7810978 ~ 7813036 (+)
LOC103021346 LOC108412479 other downstream 1671986 7856162 ~ 7877118 (+)
G214773 NA other downstream 1926772 8110948 ~ 8111325 (+)

Expression


Co-expression Network