LOC103045994


Basic Information

Item Value
gene id LOC103045994
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 7551920 ~ 7584159 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684420.1
AGGAGGGGCTTGGCAGTTGGGGGGCGTGGCCAGTCCAAATGTCAACACAGGGCACGTGGTCTTATGCAGTACCCATCCAGGCGAGCTGAGGGCACCAGTGTGGcactgctgagcagcagcagctctgataACACACAGCGCTACCTGTCCCGAGCTCAGAGCGCGCGCTGTCCCGAGCTCTGTCCCGGAGATGTTGTGCTACtggggggaggaggagggggtcAGAGCGGGGTTCGGGCTGGTGAAGCCGGGCAGAGTGCAGAGAACCCATTCCGGGGTTTCCTTCTTTTCTCCGGGGGGCAGAATCACACAGCTCGCGGCCGGGCAGAGGCTGGTGGGATTTATCCGCGGAGATGGGTCTGTGTCCGTCCTCAGACTGACCCCACTCGAAGCCCCGTGCGAGAGTCTGGAGCTGAAAGAGAAAATCAGACTGATGAGCTGTGGAGAAACACAAGCTGTTCTTCTGGCAGATGGTGGCAAAGTTCTTTTGATGGACCAATTAAACTTTTGCAgACCCGTCGCTGAGCTCTCTGGTACAAAAGTAATTCAGGTTGCATGTGGAAACCAGCACTGCATGGCATTAACCCACGaTGGTCAGCTGTTCACGTGGGGTGAGAACTCCAGTggtcagttgggtttaggtagTGGCAAGTCCAACTCTCCTCAGCCCCTTAGATCACTGCGTGGAATACCCCTGGCTCAGATCAGCGCTGGAGGAGACCACAGCTTCGCCCTGTCTCTATCTGGAACTGTGTTTGGGTGGGGCAGGAATAATGCAGGGCAGCTGGGCCTGGGCAATGCTGAGAACAGGTCCACTCCAGCCTGTGTGAATCACCTGAACCTCAAGAAAACAGTCTTCATCTCATGTGGAGAAGATCATACTGCCACTCTGTCAAAGGGAGGAACTGTTTTCACATTTGGTTCAGGCCGTTTTGGGCAGCTTGGACACAACTCATTCAGAGATGAACTTCGACCTCGTGTGGTTGCTGCACTCTGGGGGTCCAAGGTGTCCCAGATCACCTGTGGAAGAAATCACACTCTAGCACTGGTATCTTCATCAAACACGGTCTACTCCTTTGGATGGCAGCTGGGAAATGGGCAGCAGACCAATCAGTGTGTGCCATTACCTGTAGACCTTCTACCAGAATCAAATCACGGCCAGGAAATTGAGCAGATCGCTGCTGGTGGGAATCTTTCCTTTGCTTTGTGCTCTCAGCAGgAAAATGACTCTGTGCAGCCAGAGTCAACCCAAAATGAGGGTATTTTGGTATTGGAGGACAGACTAATTGATAGATGGATAAGTGAATGTGGCACAAACCAGTGGAAGACCATCAAAAAAGAAATTACACAAGTGTTCTCATCAGCAGCATGCCTAAATGGGAGCTTcgttaaaaaaagCTGTGATGGACACTATCAGACTTCTACAAACTTCTCTGGATTGGATTTGGAGTCTGTGAGAGCTGCTTTTGAACGATTAGCTAAGAAGGACATGGTGCTGTTGGAGGTGGAGAAGATTGTGGAGAATAAGCTGCTTCCGTCTCTGGGTGATGCTGCTTTTGACGTGGAAGCTCTGAGGATTTACCTCATCCTGCCTGAACTCCTCAGAGTGCTGAACAAACCTCTGCGTGAGATGAAGCTGACTGCTGAACTGGCCTCTGCCATCTTAAGGCTGAAACCATTTATGCTCCAGGTTTTGAAGAACTACTGGTCTGAGCTCCCTGTTGACTTCCTTAAACACTTGGTGGAGCTCTTTCGTAAACCATTAGCACACATCATATCTCAGAAAACATATCACCCACAAGCAGACATCACAGATGAACATCTAAAGAAATTTGTCCAAGTCCTACAGTTGATCTACAAGGCATCCTGCAGCAGCCAAAGAGAAATCACCACCGAAGATTTCTTCATCCATGACATCAATATCATTTTTGAAACAATGGCAACCGCTTTCACTCAGATGTCGTtgaattttttccagaactttgAAGTGTTGATAAATATAGAGTATCTAGTGGTCATTCTAAATTACCTTAAGTCCAGTCCCTGCATCTTCAACCTGGAAGCTAAATGCAACCTGCTGAAAATCAGACCAATTTATAGCCTTTTCAGACTGGAGTTAAGACGCACTGCACTGCTGGAGGACTGTTTCAGGCAGCTGAAAACTGCTAATGAGTGGGCTCTGAAAGGATGCCTGCAGGTGGTGTTTTCTGAGCAGAAAGAGGAAATAAAAGACGTCCATAAAAGAGACTTTTTCATCAATGTATATCAAGAGTTGTTGATGCCAGAGTCTGGAATGTTCATGTACAACGACTCGAAAACACTGATCTGGTTTCCCTCTGAGCCCAGTTTACCGGAGGAGAGGTACTTCCTGTTCGGTTGCCTGTGTGGTTTGGCCTTTTACAACAACAGTGTGGTGAACCTGCCCTTTCCTTTAGCTCTGTTCAAGAAGCTCGTCAACGTCCAGCCTTCACTGGAGGATCTCACAGAGTTCAGCCCTGTACTTGGACAGAGCCTTCAATCCACACTGGACTACAGTGATGAAGATCTTCAGAGTGCAGAGATGCCTTACACAATTGTCTGGGACAACCAAGTCATCGACCTGGATCCAAATAAGCCTGAGAAGGTCATCACAAGCTCAAACAAAAAGAAGTTTGTGGAAGCCTATGTTGATCATGCCATGAACGGGTCAGTGGAGCGAGTGTTCGAGGAGTTCAGGAGGGGCTTCTATAAAGTGTGTGATCGAGATGTGGTGAAGTTGTTCCTGCCTGAGGAGCTGAGAGGAGTGATGTTGGGCTCAGAGGAATACGACTGGGACATCCTCAAACAGAATGTGACTTATGAAGGATTGTTCCATCCAAGACACCCAACTATCATCTCATTCTGGGAAGTGTTTGATGAACTGTCAGCCAGAGATAAGAAAGCCTTCCTCtTGTTTCTGACAGGTTTTGACAGAGTGCCTGTTCTCGGTATGAACCAGGTGAAGATGAGAGTTCGCCCCCTGTTGTTCTACACCCAAGACCACTTACCTGAGGCTCTTACCTGCCATTCCCTCCTGGAGCTTCCAGTGTACAACACCAAGGAAACACTCAGAGATAAACTCACAGAGGCCCTACAGCACAAGAGAGGATTCTGGGACGATAGAATACAGCTGTGTGGGAGGAGAGCTGAATCATCATCTTTAGCTCTCGGTTTCGTTTTCCTTTCGTCTCTCGCGCCTGAACTTCACAGGAAAAACACCAGCCCTTATAAAGAACAGACAGAGCTGCTCAGAGCGCGCGCTGTCCCGAGCTCAGTCCCAGAGATGTTGTGCTACtggggggaggaggagggggtcAGAGCGGGGTTCGGGCTGGTGAAGCCGGGCGGAGTGCAGAGAACCCAGTCCGGGGTTTCCTTCTGTTCTCCGGGGGGCAGAATCACGCAGCTCGCGGCCGGGCAGAGGCTGCTGGGTCTCATCCGCGGAGATGGGTCTGCGTCCGTCCTCAGACTGACCCCATCCGGAGCCCCGTGCGGTAAACCCAAgggtctgaatctgaatctgaatgacaAGATCCAATTGATGAGCTGTGGAGAAACACAAGCTGTCCTTGTGGTAAACGGAGGGAAAATTATTTGGATGAACCAGTCTAATATTTGCAgGCCAATCAGTAAGCTCTATGGTAGGAGCATAATTCAAGTTGCATGTGGAAAGCAGCACTGCATGGCATTAACCCACGATGGTCAGCTCTTCACGTGGGGTGAGAACTCCAGTGGTCAGTTGGGTTTAGGGAGAGTCGAGCCCAGCTTTCCTCAGCCCCTCAGGTCTCTGTGTGGGATCCCACTGGCTCAGATCAGCGCTGGAGGAGACCACAGCTTCGCCTTGTCTATGTCCGGAGCTGTGTTTGGGTGGGGCAGGAACAATTCAGGGCAGCTGGGCCTGGGGGACACTGAGGACAGGTACACTCCAGCCTCTGTGACTCACCTGAGTCTCAAGAGAACAGTCTTCATCTCATGTGGAGAGGATCACACTGCCACATTGTCAAAGgGAGGAACTGTTTTCACATTTGGATCAGGCTGTTTTGGGCAGCTTGGACACAACTCATTTATAGATGAACTTCGGCCTCGTGTGGTTACTGCACTCTGGGGGTCTAAGGTGTCCCATATCACCTGTGGAAGACATCACACTTTAACTCTGGTTCATTCATCAAACACGGTCTACTCCTTCGGACGCGGGCAGATGGGAAATGGGCAGCAGACCAATCAGTGTGTGCCATTACCTGTAGACCTTCCACCAGAGACGAATCACAACCTGACAATTGTGCAGATCGCCGCTGGTGGAAATCTTTCCTTTGTCCTGTGCTCTCAGCAGGGAAATAACTCAGATTACCCAAAACCAAAGCAAGAGAGAAGAATTGTGGTATTGGAAGACAGACAAATTGACAGATGGATCAGAGAATGTGACACAAAGCAGTGGAAGACCATCAAGAAAGAGATCAAAAGAGTGTTCTCATCAGCAGCATGTCTAAATGGGAgcttcattaaaaaaagCTGTGATGGACACTATCAGACTTCTACAAACTTCTCTGGATTGGATTTGGAATCTGTGAGAGCTGCTTTTGAGCGATTAGCTGAGAAGGACAAGGTCCTGTCGGAGGTGGAGAAGATTGTGGAGAATAAGCTGCTTCCGTCTCTGGGTGATGCTGCTTTTGACGTGGAGGCTCTGAGGGTTTACCTCATCCTGCCTGAACTCCTCAGAGTGCTGAACAAACCTCTGCGTGAGATGAAGCTGACTGCTGAACTGGCCTCTGCCATCTTAAGGCTAGACTCATCTATGCTGCAGGTTTTGGAAAACTACTGTTCTGAGCTCACTGATGACTTCATTAAAACACTGGTGGAGCTCTTTCGTAATCCAATAGCAAAGATCATATCTCAGAAAACATTTAACCCACAAGCGGACATCACGGATGAACATCTGAAGAAATATGTGCAAGTTCTACAGTTGGTCTACAagGCATCAAGCAGCAGCCAAAGAGAAATCATCACCAGAGATTTCTTCATCTATGAGATCAATACCCTTCTTGACATTttgcaagttGTTACGGCGACCCCTAATTGGTTTCAGAACCCTGTGTATcttgtaaatgtacagtatctTGAGCAAATACTAAATGTCCTGAAGTCCAGCCCTTGCATCTTCAACCTTGAGGCCAAATGCACCCTTCTGAAAATCAGACCAGTTCAGTGCTCTTTCCGACTGGTGTTGAGACGCACTGCTCTTCTGGAGGACTGTTTCAGTCAGCTGAAGACTGCTAATGGTTTTGTTCTGAAAGGATGGCTGCAGGTGGTGTACTCTGAGAACCTTGAAAAGACAGATGTTAATAAAAGGGACTTTTTCCACAATGTGTTTCAAGAGTTGTTGAAGCCAGAATCTAAAATGTTCATGTACAACGACACAAAAACACTCATCTGGTTTCCCTCTGAGCCCAGTTTACCAGAGGACAGGTACTTCCTGTTCGGTTGCTTGTGTGGTCTAGTATTTTACAACAACAGTGTGGTGAACCTGCCCTTTCCTTTAGCTCTGTTCAAGAAGCTCCTCAACGTCCAGCCTTCACTGGAGGATCTCACAGAGTTCAGCCCTGTTCTTGGAAAGAGCCTTCAATCCACACTGGACTACAGTGATGAGGTTCTTCAGAGTGCAGAGATGCCTTACACAattttctggGACAACAAAGTCATCGACCTGGATCCAAACGAGCCTGAGAAGGTCATCACAAGCTCAAACAAAAAGAAGTTTGTGGAAGCCTATGTTGATCATGCCATGAACGGGTCAGTGGAGCGAGTGTTCGAGGAGTTCAGGAGGGGCTTCTATAAAGTGTGTGATCGAGATCTGGTGGAGGTCTTCCAGCCCGAGGAGCTGAGAGGAGTGATGGCGGGCTCAGAGGAATGTGACTGGGACATCCTCAAACAGAATGTGACTTATGAAGGATTGTTCCATCCAAAACACCCAACTATCATCTCATTCTGGGAAGTGTTTGATGAACTGTCAGACAGAAACAAGAAGGCCTTCCTCTtgtttctgaCAGGTTTTGACAGAGTGCCTGTTCTCGGTATGAACCAGGTGAAGATGAGAGTTTGCCCCCGATTACCCTCCACCCAAGACCACTTACCTGAGGCTCTTACCTGCCATTCCCTCCTGCAGCTTCCAGTGTACAACACCAAGGAAACACTCCAAGCTAAACTCACAGAGGCCCTACAGCACAAGAGAGGATTCTGGGACGATTAACAAATGTTATATTGTGCAACATTTATCTCTGTCttaatatatagaaatatgaCCCATAATCGTGTGGTAAAATATggcattttattgtaatttttattgtaattaatcaGGAAACTCACAGTTAAACCTTATTTTCACAACCTACAAAACACATACATTTGCTCATACTTGAATAAAA

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04060 Cytokine-cytokine receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684420.1 True 6440 mRNA 0.48 49 7551920 7584159

Neighbor

gene id symbol gene type direction distance location
LOC103045679 NA coding upstream 2715 7529580 ~ 7549205 (+)
pkd2 pkd2,LOC107684281,LOC107583176,LOC107706826 coding upstream 70246 7466177 ~ 7481674 (+)
aimp1 aimp1,LOC107594432,LOC107757008,LOC107729369 coding upstream 250097 7273205 ~ 7301823 (+)
npnt npnt,LOC107729354,LOC107675850 coding upstream 409652 7012519 ~ 7142268 (+)
gstcd gstcd,LOC107757010,LOC107729368 coding upstream 558533 6785590 ~ 6993387 (+)
LOC103023957 tcirg1a,LOC108434797,LOC105908477,LOC106609897,LOC107679885 coding downstream 97879 7682038 ~ 7699304 (+)
LOC107197796 NA coding downstream 150516 7734675 ~ 7742087 (+)
LOC103022802 NA coding downstream 164810 7748969 ~ 7757553 (+)
LOC103021660 si:dkey-28b4.8,LOC108434786,LOC107664566,LOC107551445,LOC108262771,LOC107556825 coding downstream 231664 7815823 ~ 7840389 (+)
tmx2 tmx2,LOC108412483,LOC105022872,LOC107664575 coding downstream 299035 7883194 ~ 7892498 (+)
G214465 NA non-coding upstream 129275 7420644 ~ 7422645 (+)
G214365 NA non-coding upstream 479085 7067947 ~ 7072835 (+)
G214362 NA non-coding upstream 541809 7009872 ~ 7010111 (+)
LOC111195949 NA non-coding upstream 612861 6933955 ~ 6939059 (+)
G214340 NA non-coding upstream 682774 6868717 ~ 6869146 (+)
G214502 NA non-coding downstream 25924 7610083 ~ 7651178 (+)
G214533 LOC108434796 non-coding downstream 118487 7702646 ~ 7705942 (+)
G214614 NA non-coding downstream 159041 7743200 ~ 7743407 (+)
G214613 NA non-coding downstream 160213 7744372 ~ 7745072 (+)
G214618 NA non-coding downstream 176376 7760535 ~ 7760783 (+)
LOC111196031 NA other upstream 1142852 6399076 ~ 6409068 (+)
G214175 NA other upstream 1267552 6283781 ~ 6284368 (+)
G214006 NA other upstream 2030245 5521184 ~ 5521675 (+)
LOC103034491 scoc,LOC103034491,LOC108434805,LOC107674238,LOC108263532,LOC103132857,LOC103463814,LOC106946201 other upstream 2192188 5349167 ~ 5359732 (+)
G213891 NA other upstream 2377824 5173069 ~ 5174096 (+)
pold4 NA other downstream 226819 7810978 ~ 7813036 (+)
LOC103021346 LOC108412479 other downstream 272003 7856162 ~ 7877118 (+)
G214773 NA other downstream 526789 8110948 ~ 8111325 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other downstream 1374140 8958299 ~ 9030598 (+)
sprn sprn other downstream 2991336 10575495 ~ 10583088 (+)

Expression


Co-expression Network