rufy2 (rufy2,LOC107676589,LOC107743555,LOC107725492,LOC107563060)


Basic Information

Item Value
gene id rufy2
gene name rufy2,LOC107676589,LOC107743555,LOC107725492,LOC107563060
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 9660500 ~ 9679057 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684426.1
GTTAGCCTTGCTGCTCCGCTGTAAACAAACCTGCGATGTGGCGCTTTATTACAAGCGCTCCGGTCCAGCCCCCCCGTTTAGCTGAGCGCACCCGCTGCAGTAGTACACGCTCCCGGCGGCGTTAGGCGTGTTTCGAGGCGTGTTCCGCGTCCGTGTGGCTGGTGTATGGGGCGCTACCCGTCGTGCGAGATGACCACAGCGGTTGTCAGGTGAAAGTCAGCGGGAGAGATTCGCTTTTCCTTTCCGCCATGGCCACACCTGCGCCGGAGCCGGAGATCAGCCTGGGCGAGGCGGAGAGCGGAAAGGAGAAGCCGCATGTGTTCGGGATCCTGCGGCTGCAGGAGGAGAAGGGCGGCGGGGAGAAGGCCGGGGTGAAGCCGCCGGGGGACGGGAGGTGGCAGGCGCCCATATTCGCTCTGGCTCGGAAGGCGTCGGAGACTATCTCTGGAGGCATCCATGGTCTCCCAAAGGCCGCCGAGCAGAAATCAGCCGCGTTTCCACACGAGTGGAGCGGTACGGGTAAGAGCTGGGGGCCGGGAGATAGAGAGCTTGTGTGTGGGGTGCTTATTGATACCAGTATCGATAATGATTtgAAGAAGACGTTTCTTGGATACAACAAGTCGCTGTGGGGGCCTCTGGAGATGGTGGAGAAGCTGTGCCCGGAGGCGGGGGAGATCGCAGCCAGCGTTCGAGACTTACCTGGCCTTAAAACTCCACTGGGCAGAGCTCGGGCATGGCTGAGGCTGGCACTGATGCAGAAGAGATTAGCTGACTACCTACGGGTTCTCATCACCCGGAAAGACATACTGAGtgatTTTTATGAAAGCTCTGCAGTAATGCTGGAAGAGGAGGGGGCTGTCATCGTGGGTCTCCTGGTGGGACTCAACGTCATTGATGCCAATCTGTGTGTGAAGGGCGAGGACCTGGACACACAGGTTGGGGTGATCGACTTCTCCATGTACTTGAAAAATGATATTGACGACTACAGAAGTGAAGAAAGAAATGGACAGATTGCAGCAATACTGGATCAGAAGAACTATGTTGAAGAGCTAAACAGACAGCTCAATTCCACTGTACAGGGTCTGCAGGGACGTGTTGACTCGTTAGAGAAATCCAATTCTAAACTCATTGAGGAGTTGGCAATAGCAAAAAACAACATCATCAAGCTACAGGAAGAAAATCACCAGCTGCGTACAGAGAACTCAGTAATTCTCATGAAGGCTCAGCAGCGCCTTGAGGTTGCAAAAGGGGATGCGAGCTGTGAGCTGGACACGTATAAACAGTCCAGGCAGGGCCTGGATGAAATGTACAATGAGGCACGGCGGCAGCTGCGGGAAGAATGTCAGCTCCGGCAGGATGTGGAGAACGAGTTAGTGGTACAGGTCAGCATGAAGCAGGAGATGGAACTGGCCATGAAGCTGTTGGAGAAGGACATCCATGAAAAGCAGGACACTTTGATTGGATTACGGAATCAGCTCGATGAAGTAAAGGCCATTAATGTGGAGATGTACCAGAAAATGCAGACCTCTGATGATGGCAtgaaacacaaaaatgatatgatCGCACGACTGGAGGAGAAGACCAATCAGATAACAGCTACTATGAGGCAGCTAGAGCAAAGATTGCAGGACGCTGAGAGGGACCGCCTGAGTGCCGAGGACGGAATGCGTCGATTCAAGCATGACTTCGCCAACAAAGCAGACAGCCTCCAAAAGCAGATAGCccagagagagaagcagatgTTGCAGCTGGAAACGGACTTGAAAATCGAGAGAGAGTGGAGGCAGACCTTACAGAACGACCtggagagagaacgagagaccGTCGCCCAGCTGAGCGCTGAGGCTCAGCAAATCAATGCactcaaaaaaGAGTTCCACAGACTGCAGGATGAAAACACACAGCTGAAGGGGATTTGTGAAGAACAGGAGCAGGCACTAGAGGAACTGGGCTGCAAGCTCAGCGAGTCAAAACTGAaaattgaagacattaaagagGCCAATAAAGCACTTCAGGGTGGACAGGTGTGGCTCAAGGACAAAGATGCCACACACTGCAAGCTATGTGAAAAGGAGTTCTCCATCTCCAGGAGAAAGCATCACTGCAGGAACTGTGGGGAGATCTTCTGTAACGCCTGCTCGGATAACGAGTTACCTCTCCCAGCTTCTCCCAAACCTGTTCGAGTGTGTGATACATGCCACGCCCTGCTCCTTCAGCGCTGCTCCTCCAACACCACATAAAATACACACCTGCGCACACACTCAAAACTACGTGCTGCCAAAGTGGCCAGTGTTGGCTTTAACTCTGACTACCATGTTTTCCTGCATCATGTCAAGCTAAGTGAAGGAGACCAAACGGCTGCGcctgttcctctcagtgttcgaAGTTTACATTTCTGACGGGAGTTCTGCCGAGCTGCCCCAGAACAGCACACCATTACAGGAGCTGTTCGGAATAATGTGAAGTGCCCAAAGAAGGACGTATGGTGGACATACTGGATCTGTGTCCTTTTTATAAAGCCTCAGAATTGATCAGTTTGCCAATAAATGTGTAGAGCACTACAAGTAGCGAGCAGCACTAAAGCGTACTAATATTACACATAGGTTAGCTACTTATACAGGACAACATTCCAGGCCCTACTGtaagaacacttaaaaaatgtaCGTTCCTTTTACCATCGAGCAGTGTACCACGAGAAAGTGTTGtcgaaacatttttttttttttttttttttaattcaaatgaatGTGTGCTGGACCTTTTTCACAAAATGACAATTAAGCACTAAAGCTTTCAATGCCCCTTAATCGTGATTAAGGTGGAGCTAGCACAGTCACAGTGTCCTGTACATGATCACACAGAAGTATTTTCATTCTGCAATTAATGAAAAAGTTTTATTTCCACACTATAGAACTGGTTATAGTTCagtgctttttcttttctttctttctttcttttgcagAACTGGAACACTACCCACTGTAAATGCTGCATTTATGGTCATCTTTGTACGGATGGGTTCTGGTTAAAACTGTTATGAAAACAGTTAACTATTTGACATTAGGTTTCAAATGTGAAACACTATTTCAACTGTACATATGTCTTTACTAAAGCTGAGAATTCTTCCA

Function

symbol description
rufy2 Predicted to enable metal ion binding activity. Predicted to be active in cytoplasm. Orthologous to human RUFY2 (RUN and FYVE domain containing 2).

NR:

description
PREDICTED: RUN and FYVE domain-containing protein 2-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K12482 RUFY1_2, RABIP4; RUN and FYVE domain-containing protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684426.1 True 3128 mRNA 0.49 17 9660500 9679057

Neighbor

gene id symbol gene type direction distance location
cfap43 NA coding upstream 6648 9632391 ~ 9653852 (+)
tspan15 NA coding upstream 45858 9565948 ~ 9614642 (+)
hk1 hk1,LOC107676584 coding upstream 117529 9524819 ~ 9542971 (+)
LOC103047009 hkdc1,LOC103047009,LOC106612435,LOC107676583 coding upstream 144561 9496834 ~ 9515939 (+)
supv3l1 supv3l1,LOC107725491,LOC106612443,LOC107601833,LOC107666535 coding upstream 165971 9483598 ~ 9494529 (+)
LOC103028294 LOC108438200 coding downstream 16970 9696027 ~ 9759882 (+)
glud1 glud1,glud1a,gdh01,LOC103026661,LOC108438199,LOC107743560,LOC107563055,LOC107725450 coding downstream 121639 9800696 ~ 9817693 (+)
mmrn2 NA coding downstream 178319 9857376 ~ 9886745 (+)
LOC103041708 LOC108438182,LOC108263627,LOC107565930,LOC107666514,LOC107713893,LOC107696877,LOC107743575,LOC106606775 coding downstream 850572 10529629 ~ 10555221 (+)
LOC103041404 NA coding downstream 883357 10562414 ~ 10572740 (+)
G215103 NA non-coding upstream 177919 9481672 ~ 9482581 (+)
G215102 NA non-coding upstream 178962 9481315 ~ 9481538 (+)
G215094 NA non-coding upstream 192101 9466620 ~ 9468399 (+)
G215039 NA non-coding upstream 350327 9288076 ~ 9310173 (+)
G215011 NA non-coding upstream 590633 9068995 ~ 9069867 (+)
G215197 NA non-coding downstream 15860 9694917 ~ 9695273 (+)
G215199 NA non-coding downstream 81231 9760288 ~ 9762248 (+)
G215215 fam35a non-coding downstream 108095 9787152 ~ 9788616 (+)
G215224 LOC107601818 non-coding downstream 140207 9819264 ~ 9890322 (+)
G215236 bmpr1aa,LOC108438195,LOC107666410,LOC107696892 non-coding downstream 211765 9890822 ~ 9891888 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other upstream 629902 8958299 ~ 9030598 (+)
G214773 NA other upstream 1549175 8110948 ~ 8111325 (+)
LOC103021346 LOC108412479 other upstream 1783382 7856162 ~ 7877118 (+)
pold4 NA other upstream 1847464 7810978 ~ 7813036 (+)
LOC111196031 NA other upstream 3251432 6399076 ~ 6409068 (+)
sprn sprn other downstream 896438 10575495 ~ 10583088 (+)
G215513 polr1b other downstream 1268022 10947079 ~ 10948287 (+)
cpeb3 cpeb3,LOC106604870 other downstream 1446643 11125700 ~ 11195423 (+)
LOC111195936 NA other downstream 1931261 11610318 ~ 11613123 (+)
G215834 NA other downstream 2526444 12205501 ~ 12206164 (+)

Expression


Co-expression Network