LOC111195940 (LOC108263518,LOC108444380,LOC108442180)


Basic Information

Item Value
gene id LOC111195940
gene name LOC108263518,LOC108444380,LOC108442180
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 23932621 ~ 23933612 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684454.1
ATGTTTCTTAGTTTCTTAAATTTGCATAAAACTATTGACTTCGACGTTGAAAGCTGCGAACGCATCAGAAGATTTACTATTGTTACGTCTATATGTGCTGTGGTTCTTCTGGTTCTTGCTTCTTTCTTGGCCTACAGGTTCCAGTTTTACCTGCGTTATGGATATATTCTCCTTAAAGGTTATAGGACCTCCAGACAACAAGAATGGTCCTATGATGCGTTTGTGATTTATTCCAGTAAAGATGAATGCTGGGTAATGGATGAACTGGTGGAAAACTTGGAAAATGGAATTCCACCTATACATCTTTGCCTCCATGTGCGAGACTTTGAAGCAGGCAAGGCCATCACCTCCAACATTATAGACGAGGGCATTATGGGCAGTCGTAAAATTATAGTGGTCGTATCTAAACACTTCACTGACAGCTCTTGGTGTAGATTTGAGTTTGAAGTGGCCCAGTCCTGGCTAGTGACACAAGGCAATcccaacatcatcatcatcattttggAAGATGTTGAAGAAGAGAAGACAAAGAAAGTGTTTGGGCTTCACAAACACCTGAAAAAGAACACTTACCTGAAGTGGAGCTCAAATCCCATAAATAACATGAGATTCTGGATTCGTCTCAGAAAAGCTGttacaacataa

Function

NR:

description
PREDICTED: toll-like receptor 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684454.1 True 645 mRNA 0.40 3 23932621 23933612

Neighbor

gene id symbol gene type direction distance location
LOC103039990 LOC105007542 coding upstream 50 23929762 ~ 23932571 (+)
LOC103030417 si:ch211-198a12.6,LOC103030417,LOC108444387,LOC108263519,LOC107747450,LOC107589522,LOC107690167,LOC107678580 coding upstream 6508 23920183 ~ 23926113 (+)
stox1 stox1 coding upstream 15369 23896582 ~ 23917252 (+)
ccar1 ccar1,LOC107690173,LOC107582549,LOC107708455,LOC107747452 coding upstream 53219 23859143 ~ 23879402 (+)
LOC103031995 LOC108444338,LOC104946244,LOC103387332 coding upstream 75103 23850915 ~ 23857518 (+)
LOC111196037 LOC105007542 coding downstream 17244 23950856 ~ 23953805 (+)
LOC111195965 LOC105007542 coding downstream 25462 23959074 ~ 23962101 (+)
LOC111196020 LOC105007542 coding downstream 32030 23965642 ~ 23969331 (+)
LOC103042015 LOC108441770 coding downstream 37078 23970690 ~ 23977592 (+)
pdzd7 pdzd7,LOC107690160,LOC107678494 coding downstream 158565 24092177 ~ 24130745 (+)
G218688 NA non-coding upstream 152117 23780213 ~ 23780504 (+)
G218681 NA non-coding upstream 169184 23763218 ~ 23763437 (+)
G218680 NA non-coding upstream 169861 23762247 ~ 23762760 (+)
G218675 NA non-coding upstream 183393 23748723 ~ 23749228 (+)
G218656 NA non-coding upstream 212780 23716712 ~ 23719841 (+)
G218742 NA non-coding downstream 4458 23938070 ~ 23938274 (+)
G218743 NA non-coding downstream 11946 23945558 ~ 23945812 (+)
G218754 NA non-coding downstream 78263 24011875 ~ 24019458 (+)
G218795 sfxn3,LOC103040609,LOC108263463,LOC108441766,LOC107708462,LOC107678536,LOC105911632 non-coding downstream 149327 24082939 ~ 24091553 (+)
G218799 NA non-coding downstream 200564 24134176 ~ 24137086 (+)
G218651 NA other upstream 224378 23696577 ~ 23708243 (+)
kcnma1 kcnma1,LOC108263740 other upstream 1114507 22563798 ~ 22818114 (+)
G218351 NA other upstream 1713761 22217299 ~ 22218860 (+)
mark3 mark3 other upstream 1834362 22060963 ~ 22098259 (+)
LOC103032529 prkg1,LOC108443637,LOC108263833,LOC103355670,LOC103373746,LOC107665604,LOC107747254 other upstream 3516978 20335947 ~ 20415643 (+)
LOC103041715 zgc:154058,LOC103041715,LOC108441772,LOC107733751,LOC107690163,LOC107570530,LOC107582519,LOC103387327,LOC107708463,LOC108263524 other downstream 47523 23981135 ~ 24028981 (+)
G218758 NA other downstream 125599 24059211 ~ 24063788 (+)
fam213a fam213a,fam213aa,LOC107690162,LOC107733773,LOC107582522 other downstream 130883 24064495 ~ 24071626 (+)
LOC103046104 LOC108441759 other downstream 509679 24443291 ~ 24466867 (+)
G219050 NA other downstream 908690 24842302 ~ 24842533 (+)

Expression


Co-expression Network