LOC111195941


Basic Information

Item Value
gene id LOC111195941
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 24580100 ~ 24585465 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684455.1
ATGGAGTTTTGGCGTAGCGAAGAGCATCGCCTGGAGgtGGAGTCTCACTGCGCACACGACTCTCCCACTCTCCTGCCTTTTTGCGAGGAGCCAGACCCCTGGATGGAGCTCAGGAGGGTTCAGCATGAGTTCCTCGAGGGAAAGCTGAGGGCCCTCATTCAGAAGgtGGAGTCTCACTGCGCACACGACTCTCCCACTCTCCTGCCTTTTTGCGAGGAGCCAGACCCCTGGATGGAGCTCAGGAGGGTTCAGCATGAGTTCCTCGAGGGGAAGCTGAAGGCCCTCATTGAGAAGCTTTCCTGTCCCAGGTCGCATGTTGTGAGTGTCCTGGTGCCAGTTATGGAGGCAGCCCCCGCTAACAGGCTGGATTCTACCAAGCCTGATATCCCAGGTCCAGTTGCACAGTGCGaagaagctccagctccagacCTCACCACCACCTCTCATCCAGAGCCATACAGCCAGGGAGACACTGCACTGTCACCCACCACTAATACACAATGCAGATCCCTGAAACGCCCTGTCACCAACTTTCGGACCTCCTTTGCGTGTCGTTTCAGGTCTCCTCGTCGAGTCCTGGTGCAGGTAGAAGAGGCAGATCCCTCTCACCGGCTGGACCTTCAGGACACAAAGCCTGAACTGGAGCCAGTGCCAGCTGCACAGGACAAGGACGACCTGGAGAACGACGTGGAGGTCCTGGAGTTGCAGCATCACAGGCCAGGAGAGACAGCTCCAAACAGAAAGAGAGGATGGCTACAGCACCTGCTCAGCTGCTTCAGGTGGAAAGCAAGAAAGAGCTGAAAAGGTGATCTGTAGATGATCTGGCTGTAGAgctgtacatacatacacaaacacatacataaacacatacatacacagacaTACATTGCAGGGTTAGAATTTTGGTAAATGGGCTGAGGCACACAGTAGTGGTCTGGAGGTTGTGGGTAATATTCTGTGATCTCCTATGTCGTGAGCTTGGAGGGGGGTGAGTCTGGGATGCCAGAATTCACTGCGTCTTCCTGAGGTGTTCAGTGTAACGCTTATGAAGGGAGGTCCTCAGCGGATGACCCCTGTGAAGAGCTTGCGGCATAGTGAGGGATCAGTGTATCAGTGGGAGAAGGGAAGGGTGGCTGTTTCatttttgggataaatgttgctgattggatGGTAAATGGCCACAGCAGCGTAGTTGTTAGCTGTAGGAGTTTATGGTTCTCGTGTAGtttaatgtaaatgaatgggagagtagagtatagaaGGGAATGGGCGGGGCTCTAGATTTAACCACAGTTGCGTTACTTATATAGATATAGAGATAGACGAATAGGatacacatataaatacacacacagtaatatGCACATgcattggtccggtctgtctcctcattaatagtacagttGAGTTAGCGAAAAGATATCCTTTTTGGGgtggacaaatccacctgtttcgaacccggttcctacgccaatgcctCCGGGGACTCTGTTTTCCTTCCACAGTCCAAAAGAaactgtgtgcccagatatggattggcactttAGGTGGACGGTGTTTcagttgagagtacgctgtgcgtgattctcactggtgtgtgttgagtgtgtgtagaatgtaattTGCATAGAATGTAAAAGTTTTATTGAGTGgcagaaaggtgctatataagtgtaattgtaagtaagtaaacTTCTTGTGTGGAGCAAACTCAAAaagtttgaatgtttttttatcagTCAGTGTAGCTCTAGTGCACACCTCTGAACTAGCATGACTCTATGTATGCTAATACTTGACTCAAATTAGCTTTCTTGAGATCACAGGGTTTTACATAATTGTTCCAATAGCATTGTGATGTTTTTATGgttgttcttaataaaaacatgaatgatgattttgataca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684455.1 True 1907 mRNA 0.48 9 24580100 24585465

Neighbor

gene id symbol gene type direction distance location
LOC103043568 htra2,LOC107690150,LOC108263241,LOC106589831,LOC104960364,LOC103358855 coding upstream 49908 24522811 ~ 24530192 (+)
mrps26 mrps26 coding upstream 59146 24517414 ~ 24520954 (+)
LOC103042321 LOC103042321,LOC108441753 coding upstream 64278 24511341 ~ 24515822 (+)
LOC103040903 NA coding upstream 72797 24495653 ~ 24507303 (+)
LOC103045799 cpxm1,cpxm1a,LOC107678553,LOC107708467 coding upstream 133462 24429672 ~ 24446638 (+)
LOC103046402 NA coding downstream 5623 24591088 ~ 24597515 (+)
LOC103044475 rab11fip5,LOC108263817 coding downstream 13140 24598605 ~ 24657648 (+)
LOC103045503 sfxn5,sfxn5a,LOC108262907 coding downstream 72966 24658431 ~ 24678113 (+)
cdc25b cdc25b,LOC108417292 coding downstream 194144 24779609 ~ 24787340 (+)
ap5s1 ap5s1 coding downstream 209425 24794890 ~ 24798599 (+)
G218920 NA non-coding upstream 9368 24567317 ~ 24570732 (+)
G218893 NA non-coding upstream 100878 24474824 ~ 24479222 (+)
G218853 pomk non-coding upstream 118791 24459393 ~ 24461309 (+)
G218842 NA non-coding upstream 258508 24318267 ~ 24321592 (+)
G218841 NA non-coding upstream 261906 24317642 ~ 24318194 (+)
G218948 NA non-coding downstream 3845 24589310 ~ 24641047 (+)
LOC111196006 NA non-coding downstream 204612 24790077 ~ 24792821 (+)
G219067 NA non-coding downstream 361259 24946724 ~ 24947071 (+)
G219069 NA non-coding downstream 423676 25009141 ~ 25009529 (+)
G219074 NA non-coding downstream 455772 25041237 ~ 25041789 (+)
LOC103046104 LOC108441759 other upstream 113233 24443291 ~ 24466867 (+)
fam213a fam213a,fam213aa,LOC107690162,LOC107733773,LOC107582522 other upstream 508474 24064495 ~ 24071626 (+)
G218758 NA other upstream 516312 24059211 ~ 24063788 (+)
LOC103041715 zgc:154058,LOC103041715,LOC108441772,LOC107733751,LOC107690163,LOC107570530,LOC107582519,LOC103387327,LOC107708463,LOC108263524 other upstream 551119 23981135 ~ 24028981 (+)
G218651 NA other upstream 871857 23696577 ~ 23708243 (+)
G219050 NA other downstream 256837 24842302 ~ 24842533 (+)
dapp1 dapp1,LOC107579178,LOC107556904,LOC107667071,LOC107585227,LOC107733757 other downstream 576262 25161727 ~ 25174708 (+)
G219171 cunh4orf32,c3h4orf32 other downstream 671485 25256950 ~ 25302587 (+)
LOC103047652 NA other downstream 853254 25438719 ~ 25442581 (+)
LOC111196018 NA other downstream 2614987 27200452 ~ 27236616 (+)

Expression


Co-expression Network