LOC103045679


Basic Information

Item Value
gene id LOC103045679
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 7529580 ~ 7549205 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684518.1
gaGGGCAGTCAGTTCGTTAGATCAGCTGGGTTTAATATGCTGTAAACTTACAGCCGGAGTTTGGAGTTTGCTGCATGGAGTCCCATGTTAATATCTGCAGCTGCACTGGGAGCTTCGGGATGTTCTGCTGGGGAGACGCGTCCAGAGGGCAGCTGCTGCTGCCCGCAGCGGAGGGGCATCTCCCTAAACCCACCTTCATCAGCATCATCACTGCGGTAGTCGGGGTCTCGTGTGGGGAGAATCACTCTCTGATTGTGGCTGAAAATGGGCGAGTTTTCTCCTGTGGAAGAAACTCTAAAGGGCAGCTGGGGAGAGCGAAGAGTAAAGACACTAAACAGCCAGttaTTGAAGGTCTTGGGGGAGTAGCCGCTGTGGCCTGTGGCCAGGAGCACAGTTTGGCTCTGTGTGACTCAGGGCAGGTGTTCTCCTGGGGAGCAGGTGGAGAAGGACAACTAGGCCTGAGCACCCCAGTGTCAAAATCCTCCAAACCAGTACTGATTCAAATACCAATGATCCTACCAATACCAGTGGTGCAGATTGCTTGTGGAAATATCCATTCTCTTGCTTTAACAAAAGGTGGTGAGGTGTTCTCCTGGGGCCAGAATAGCTATGGTCAGCTGGGGCTGGGGAAGTCTGTGCCCCTGCAGCCTGTTCCTGCTGTGATACCGGCTCTAATTGGAGTGCCAGTGATTCAGATCTCTGCTGGTGGAGAGCACACTCTAGCCCTCTCCTGTTCAGGACAGGTCTTCTGCTGTGGAGCGAACAGTGCAGGACAGCTGGGTCTCAATAGGACTGATGAGAAAGGCCGCTTTGGAGTTTGTGCTGTTCCTGCTCTAAAGCGGCTGCCTGTCGCTTACATCAGCTGTGGAGCAGCACACACTGCCGTCCTCACTAAgGATGGAGAGGTCTACACTTTTGGAGATGGTGCACATGGTCAGCTCGGGCACAGCTCCACCAGCAGGGAGCTCCTGCCCAGGAAAGTTGAGGACATTGACGGACCAGCTAAACAAGTAACCTGTGGCAGCCATCACACACTGGTTCTGATGTCATCTGGTGTCCTCTATGCATTCGGGCATGGAGTCAGAGGTCAGCTGGGGAACGGTAGTGGTAAAGATAGCCTGCAGCCTGTAAGACTGGATGAACTGTGGAAGGATTTAGCAGTGAAGATTCAAGCAGaaaTGAGGATCTCTTCTGGCTGGAATTCCAACTTCCTTTTCTTTCCTCCTCCCAAGccttcTGTTCTGGGAGAGCCGATTGGAAGACTGGATGATGCCAGAGTGCAGAGATGGGTCTCGATgttggagagagacagaaccaCAGAGATAGCTAAAAGGGAGATTAGCTTGACTTTTTCAACATGCTCGAATATCGTTGCTTGTTTCCTGGAGGAAAGTGGAGCCATTGGTAAGAGTAATTCTGGCACCATGGCAGTTGATTTAGATGCTGCCAGCCAGACATTTGACAAGCTTGTGAAGATTCCTTGGATCAAGAAATCAATCAACCTCATACCTCTGGTGCGTAGCCTTTGGTATGGTTCAGCAGTGATGAAGTGTCCAGAGATCTTCCTGCTTCTGCCCACATGCCCTATTCTTCATGAAGAGCAGAACACCATTGAGTTTGTGCTGCCGATTGCAGTGGCCTTAACCAAGCTTAACGAGACTGCCATGAAAATCCTGAAGGAACACTGGTCCGCCATGGACGCCCCTATGATGATCAAACACATTTACATGTGGAAATCTGCACTTTCCTTTCTCTTGAAGGCAAAGGTGTGGTTAGACTTTATCCCTGGAGTGAAGGGTGTCCTGGAGGTCCTCAAATATCTGTACAGGAGCAACAAAAGGGTAGAGAAGTCAAGGAAAGTTCCCATCAGTGAGTTCTACATAGAGGAGATTGGCAACGTAGAGCTGTTGCTCCAGCAGGACATTACACTCTGGCGGCAGATTAAATGGGGACAGGTGGAGGAAATGGACATGACGCCTCCAGTTTTCTGCCGTTACCCATTCCTCCTGGACCTGCAGAGCAAGATCAGGATTTTGAACTACGATTCTGCCATAACAAAGATGACGCACCACTTCATTCACAACCAGGTGAAGATGGGGCTGCAGCCGGAGTTATTCAATCCAGAGGCCCCTTTGCCCATCATGCTGCTTAAACTGAGACGCACAGCACTGCTGGAGGACACGTTCAGACACCTTTCCTACACTGACCACGACAACTTCAAAAAAGAGCTGATGGTGCATTTTGTTGAAGATTCCAGACAAACAGCTGTCAACCAAAGAGACTTCTTCCTCCACGTCTTTACTGAGCTCATAGCTCCAGAGTCAGAGATGTTCATTTACAATGACAGCCAAACAATGATCTGGTTCCCATCCAAGCCAAAACTGGAATCAAAGAAGTATTTCCTGTTTGGGATCCTGTGTGGCCTGGCCCTGAACAACAGCAACATCGTGCACATGCCCTTCCCTCTGGCCATGTTTAAGAAGCTGGTGAACGTGAAGCCCACTCTGGATGACCTGATCGAGTTCAGACCTGTAATCGGAGAGAGTTTGCGATATCTACTGTACGACTACACTGATGATGACGTTGAGAACATGGAGCTGTCCTTCTGTATTCACTGGGATGGAGTTGATGTGGAACTGGATCCTCAGGAAAGAGGAAAACTGGTGTCAAGGGATAACAAAAAGAAGTTTGTGGATGCCTATGTGGATTACACCATGAACAAATCAGTGGAGCAAGTGTTCGAGGAGTTCAGGAGGGGCTTCTATAAAGTGTGTGATCGAGATGTGGTGGAGTTCTTCCAGCCCGAGGAGCTGAGAGGAGTAATGGTGGGCACAGAAGAATACGACTGGGACGTATTCCGACAGAACACGGCTTACAATGGACAGTACCACACCAGTCACCCCACTATCATCACTTTCTGGGAGGTGTTCGAGGAGCTGACAGAGGAACAGAAGAAGGCCTTCCTCTTGTTTCTGACGGGCTGTGATCGCGTACCCATCCTAGGAATGGAGCAGGTGAAGATGACCGTCTCTGTCCTGCTGAACTCCACCCAGGAGCACCTGCCCGAGTCCCTCACCTGTCACTGCCTCCTCATGCTCCCAGAGTACGAGAGCAAGCAGCGGCTGCAGGACAAGCTCGTTGAAGCCCTGAACCACAACAGAGGCTTCTGGAGGGAGTAGACAGAatggtgtacagtgtgtttgCTGTTGtgcattgttttaaaacatctatttttgGATGCTTAGAAGCGCTTAATATTTTCTGGTTAGCTTGTTGGTCGTTGGCACACCTTAACTCTCTGATTTTtacttgttattattaaaatatctgTTTTATTGATCTATTGTTATTAGAGTATTTTTGAGATGTTTGCTCATGTTCATATAATAAGCAAACAGTTTAATATTGGTTTATTACTCtacattataatttattagttTAATATTGGACACCATTATTCTATTAGTCTTTCCATTTCTCACAATAGTCGCAGAATAATAAGCCTCAAGATTATCTCTGCGTATATTAAAGATTAAGATCTGGAGagcttcttttctttattttccctTTTTGGCTTAAGATTCTGGTCATCACACCCATATATGACAACTGTCATTTcgcaataaataaaactataaacacacaataaataaatggaagtctGTTCA

Function

GO: NA

KEGG:

id description
K22372 HERC5_6; E3 ISG15--protein ligase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684518.1 True 3668 mRNA 0.48 25 7529580 7549205

Neighbor

gene id symbol gene type direction distance location
pkd2 pkd2,LOC107684281,LOC107583176,LOC107706826 coding upstream 47906 7466177 ~ 7481674 (+)
aimp1 aimp1,LOC107594432,LOC107757008,LOC107729369 coding upstream 227757 7273205 ~ 7301823 (+)
npnt npnt,LOC107729354,LOC107675850 coding upstream 387312 7012519 ~ 7142268 (+)
gstcd gstcd,LOC107757010,LOC107729368 coding upstream 536193 6785590 ~ 6993387 (+)
lef1 lef1 coding upstream 800597 6648941 ~ 6728983 (+)
LOC103045994 NA coding downstream 2715 7551920 ~ 7584159 (+)
LOC103023957 tcirg1a,LOC108434797,LOC105908477,LOC106609897,LOC107679885 coding downstream 132833 7682038 ~ 7699304 (+)
LOC107197796 NA coding downstream 185470 7734675 ~ 7742087 (+)
LOC103022802 NA coding downstream 199764 7748969 ~ 7757553 (+)
LOC103021660 si:dkey-28b4.8,LOC108434786,LOC107664566,LOC107551445,LOC108262771,LOC107556825 coding downstream 266618 7815823 ~ 7840389 (+)
G214465 NA non-coding upstream 106935 7420644 ~ 7422645 (+)
G214365 NA non-coding upstream 456745 7067947 ~ 7072835 (+)
G214362 NA non-coding upstream 519469 7009872 ~ 7010111 (+)
LOC111195949 NA non-coding upstream 590521 6933955 ~ 6939059 (+)
G214340 NA non-coding upstream 660434 6868717 ~ 6869146 (+)
G214493 NA non-coding downstream 23960 7573165 ~ 7647997 (+)
G214502 NA non-coding downstream 60878 7610083 ~ 7651178 (+)
G214533 LOC108434796 non-coding downstream 153441 7702646 ~ 7705942 (+)
G214614 NA non-coding downstream 193995 7743200 ~ 7743407 (+)
G214613 NA non-coding downstream 195167 7744372 ~ 7745072 (+)
LOC111196031 NA other upstream 1120512 6399076 ~ 6409068 (+)
G214175 NA other upstream 1245212 6283781 ~ 6284368 (+)
G214006 NA other upstream 2007905 5521184 ~ 5521675 (+)
LOC103034491 scoc,LOC103034491,LOC108434805,LOC107674238,LOC108263532,LOC103132857,LOC103463814,LOC106946201 other upstream 2169848 5349167 ~ 5359732 (+)
G213891 NA other upstream 2355484 5173069 ~ 5174096 (+)
pold4 NA other downstream 261773 7810978 ~ 7813036 (+)
LOC103021346 LOC108412479 other downstream 306957 7856162 ~ 7877118 (+)
G214773 NA other downstream 561743 8110948 ~ 8111325 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other downstream 1409094 8958299 ~ 9030598 (+)
sprn sprn other downstream 3026290 10575495 ~ 10583088 (+)

Expression


Co-expression Network