LOC107197796


Basic Information

Item Value
gene id LOC107197796
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 7734675 ~ 7742087 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684520.1
ACCAGAACAGCGGACGATTTAGGAGACGCACACTCGCTCTGCACCGGAAAACCCGGAAGAGAAGGGATCACGTGACCCAATGAATTGGACAACTAATGTTACGCACCTGGAGCTGGGGCTATGGGCCAAGATTGACAAACCAGTGCTTGCTTTCATTCTGAGCATTGAGATGGTGATTGGCATACTAGGAAATGGTTTGGTCCTGGTTGTTAAAGTTGTGTGTAGGGATCAGTTTCAGTGTGATTACTGGGTGCCGTTCATCAGTCTCACTCTGTCTGACTTCTGCTGTTCTGTTCTGATCATAACCGGCTCATTCCTGGCCGTTTTGACTGGAGGCCAGGAGTCACCGTGGTGTGAGGTGGTCAGCCTGTTCAAATTCACCTTTATCACTTCGTCTTTTGGAAGCGTAGGACTTCTCTGTCTCCAGCGTTATTTGGGTGCAGACTCCAAAAGACGATGCTGGTCTGTCATCGTTATAGTGACCTGTCTGGTGTCGTGGTTGACAGGTAGTGTGTTTGGAGTCGTGCCAGTGGTCTATGACTGGATCAGGTATGATTCTTCTGAGATGCTGTGTGCTGTGTTCTGGGAGAGCAGCTACTCGGACATGTTGATCTACATCCTTTGTGCTATTACCATCTCCATCTTCCCTGCGATGCTTATCATGATCATCTTCTCCCTGTTGACCTCGTTGGGCTATGGAAAGAGTGTGAGCAGCACTGGTGATCTGTCCTCTGTCACTCCTCTAGTGGTGGGGTCCTTTCTGGTCTGCTACACTCCTTTCATCCTGTCCGAGCTGATTCTACTGGGAAGGCTGGACCTCTCACCatctccagactggctgaggaCACTGTCGTCAGTGTTGGCATATCTGGACTGCAGCCTGAACCCCATCATCTACTGCACTAATCAAGGTTTCCGAGAGGCAATGCTCGCACTGCTCTGGAACACCAAAAAGACGACTTTCCCTGAGCCTGTGCTGACCTGCGTAAAATGTATAGAAGTataaatctaataataaaatgaaagaaatcttTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684520.1 True 1035 mRNA 0.49 7 7734675 7742087

Neighbor

gene id symbol gene type direction distance location
LOC103023957 tcirg1a,LOC108434797,LOC105908477,LOC106609897,LOC107679885 coding upstream 35371 7682038 ~ 7699304 (+)
LOC103045994 NA coding upstream 150516 7551920 ~ 7584159 (+)
LOC103045679 NA coding upstream 185470 7529580 ~ 7549205 (+)
pkd2 pkd2,LOC107684281,LOC107583176,LOC107706826 coding upstream 253001 7466177 ~ 7481674 (+)
aimp1 aimp1,LOC107594432,LOC107757008,LOC107729369 coding upstream 432852 7273205 ~ 7301823 (+)
LOC103022802 NA coding downstream 6882 7748969 ~ 7757553 (+)
LOC103021660 si:dkey-28b4.8,LOC108434786,LOC107664566,LOC107551445,LOC108262771,LOC107556825 coding downstream 73736 7815823 ~ 7840389 (+)
tmx2 tmx2,LOC108412483,LOC105022872,LOC107664575 coding downstream 141107 7883194 ~ 7892498 (+)
LOC103028482 LOC108434761,LOC105891496,LOC106611657,LOC101069382,LOC108243062,LOC106594846,LOC106604652 coding downstream 278562 8020649 ~ 8029171 (+)
slc43a3 slc43a3 coding downstream 372992 8115079 ~ 8127288 (+)
G214533 LOC108434796 non-coding upstream 28733 7702646 ~ 7705942 (+)
G214502 NA non-coding upstream 83497 7610083 ~ 7651178 (+)
G214493 NA non-coding upstream 86678 7573165 ~ 7647997 (+)
G214465 NA non-coding upstream 312030 7420644 ~ 7422645 (+)
G214365 NA non-coding upstream 661840 7067947 ~ 7072835 (+)
G214614 NA non-coding downstream 1113 7743200 ~ 7743407 (+)
G214613 NA non-coding downstream 2285 7744372 ~ 7745072 (+)
G214618 NA non-coding downstream 18448 7760535 ~ 7760783 (+)
LOC111196001 NA non-coding downstream 33549 7775636 ~ 7776179 (+)
G214638 ssrp1,ssrp1b,LOC107746478 non-coding downstream 54327 7796414 ~ 7800876 (+)
LOC111196031 NA other upstream 1325607 6399076 ~ 6409068 (+)
G214175 NA other upstream 1450307 6283781 ~ 6284368 (+)
G214006 NA other upstream 2213000 5521184 ~ 5521675 (+)
LOC103034491 scoc,LOC103034491,LOC108434805,LOC107674238,LOC108263532,LOC103132857,LOC103463814,LOC106946201 other upstream 2374943 5349167 ~ 5359732 (+)
G213891 NA other upstream 2560579 5173069 ~ 5174096 (+)
pold4 NA other downstream 68891 7810978 ~ 7813036 (+)
LOC103021346 LOC108412479 other downstream 114075 7856162 ~ 7877118 (+)
G214773 NA other downstream 368861 8110948 ~ 8111325 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other downstream 1216212 8958299 ~ 9030598 (+)
sprn sprn other downstream 2833408 10575495 ~ 10583088 (+)

Expression


Co-expression Network