LOC111195965 (LOC105007542)


Basic Information

Item Value
gene id LOC111195965
gene name LOC105007542
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 23959074 ~ 23962101 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684607.1
taatttgttatttatagagAAGCTGTGAACACTGGCATAGACAGTATTATCTCAGTTCCCATTTAACACCCCAAATTCATGATGAAGTTCCTTTTTTACACCTTGAAGCACAGTGACTATCACAGGGTTAGTCTCACACTCAATCAGACATTACTGTTGAGATATTGCTCCTGTAATATGACTGCCTATTGTAAGATTGGAGGATTATTCATCTACATACTTTTCTTTCTTGTACAACATGGAATCGGAGAGGAGTGCACACAAATTAAAAAGCATGGACAATATTCATGTGAGGGACGGAATCTCACCTACATACCTACCAGTTTACCTTCCTCTCTGAAGATTCTGGActtcagttttaattttttgccCACTTTGAAGAGGTCTGTATTCCCTCAGCTGAATGATCTGCAACATCTTGATCTTACAAGATGTCATATTCATCATATTGCTGATGATGCTTTCCTCAATATGAAGAACCTCACCACTCTAATTCTCACTGGAAACCCTGTCTCATATTTCGGACCTGATAGCCTGAATGTGCTACATAAATTACACAGATTAGTTTTGATGGACTCTGGCCTGTACTCTTTAAATATCCGATTTAACAATCTCACCAAGCTTCAAGAACTAAACATTGGAACTAACAACATTCAGTCCATGGCTCTTCCACCGTTCATGATACACTTTGAAGACTTTAACTTACTGGATCTGCATGCTAATAACATTTCTATCTTAAAAGTAAATGACACAAATATTCTTCAGCAGATGAAAGGAAATCTCACATTGATTCTCTCAAGGAACCCGATATTACACATAGAACCAGGAGCATTTCAAAACATGTACCTCAGAGAGCTTAACATTCGCAACGCCTTTGCTTCACTTGATGCCCAAAGGGATGGTCTAAAAGCCCTCAGCGGTCTTAATGTTGGCAAACTTGTAATTGGAAACTACATAGAAAATTTCATGTTAAAAACATCTGATGGTGATCTTAACGGCCTCTGCCTGATTAATTTTGAAGAAATTGATTCTCTCTGTGCTGGTTGGTCAGCGTCTGAATTACAGTGTATTGTCAATGCAACAAAAATCTCTATTGAAAGAGGAAATGTCAGAGCAATAGAAAATGTTCCATTTCAGGGAGTTAAAGAACTCCGCATTGTTGCCAACATACCTGTATCACTGGAACTTTCCCATCTAGAAACACTGGAAACATTAGTGGCAATTCAgactaattatatatatattgtaggaATCAGTGACATGCCCAGGCTCCAGCATATAGATTTAAGTCAAAACAGAGTACACATTACTGACTGCTGTGAAAACTATTTCAAGAGGATGCCAAATATTCGCAGCCTTAACCTGAGTAAcaatggaaatatatatttgagcAATAACCCATTTTCTGGACTTTCTTCATTAGAAGTTTTGGACTTTCATCAAACTACTTTAAAAGGATTAGCTACCAaatttgaactttttaaaaagctccagAATTTAAAATATCTGGATATTTCTTATACAGATTTTACATTTTGGAGCACTGTGAGTTTTGGCAGCTTAAACAGgttaaaagtactaaaaatgGCAGGCAACCATTTTCAAGAAGATGCGCTGAGTTACTTATTTGAAAATCTCACATCAGTGGAATACATAGACATCTCAAACTGTGAAATTGACAGCATAGCCTGGAGAACATTTAAAGATCTTCCAAGATTGCAGCAGTTATTGCTTAATCAGAACAGATTGATGGTTTTGGATTTTGTAACCCATCCAAATTTAAAAGACTTGAGATTATTAGAAGTTCACACAAATAATATTGCTAGCATCCCTCTTAATATCCTACAAAATCTTCCAAAAAATCTCACTGTTCTTGATTTGTCCTTTAATCCTATCGATTGTTCCTGTTCTCAAATTAATTTTATCTTATGGATCACTAGCCATCAGCAAATCTTCCCcaagaaaaataacattttatgtaAATCACAATCACTGGGATCAAGGCATAAAACTATTGACTTTGACGTTGAAAGCTGCGAACGCATCAGAAGATTTACTATTGTTACGTCTATATGTGCTGTGGTTCTTCTGGTTCTTGCTTCTTTCTTGGCCTACAGGTTCCAGTTTTACCTGCGTTATGGATATATTCTCCTTAAAGGTTATAGAACCTCCAGACAACAAGAATGGTCCTATGACGCGTTCGTGATTTATTCCAGTAAAGATGAATGCTGGGTAATGGATGAACTGGTGGAAAACTTGGAAAATGGAATTCCACCCATACATCTTTGCCTCCATGTGCGAGACTTTGAAGCAGGCAAGGCCATCACCTCCAACATTATAGACGAGGGCATTATGGGCAGTCGTAAAATTATAGTGGTCGTATCTAAACACTTCACTGACAGCTCTTGGTGTAGATTTGAGTTTGAAGTGGCCCAGTCCTGGCTAGTGACACAAGGCAATCctaacatcatcatcatcattttggAGGACGTTGAAGAAGAGAAGACAAAGAAAGTATTTGGGCTTCACAAACACCTGAAAAAGAACACTTACCTGAAGTGGAGCTCAAATCCCATAAATAACACAAGATTCTGGATTCGTCTCAGAAAAGCTgttataacataa

Function

NR:

description
PREDICTED: toll-like receptor 4 isoform X3

GO:

id name namespace
GO:0002224 toll-like receptor signaling pathway biological_process

KEGG:

id description
K10160 TLR4, CD284; toll-like receptor 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684607.1 True 2625 mRNA 0.37 3 23959074 23962101

Neighbor

gene id symbol gene type direction distance location
LOC111196037 LOC105007542 coding upstream 5269 23950856 ~ 23953805 (+)
LOC111195940 LOC108263518,LOC108444380,LOC108442180 coding upstream 25462 23932621 ~ 23933612 (+)
LOC103039990 LOC105007542 coding upstream 26503 23929762 ~ 23932571 (+)
LOC103030417 si:ch211-198a12.6,LOC103030417,LOC108444387,LOC108263519,LOC107747450,LOC107589522,LOC107690167,LOC107678580 coding upstream 32961 23920183 ~ 23926113 (+)
stox1 stox1 coding upstream 41822 23896582 ~ 23917252 (+)
LOC111196020 LOC105007542 coding downstream 3541 23965642 ~ 23969331 (+)
LOC103042015 LOC108441770 coding downstream 8589 23970690 ~ 23977592 (+)
pdzd7 pdzd7,LOC107690160,LOC107678494 coding downstream 130076 24092177 ~ 24130745 (+)
LOC103045799 cpxm1,cpxm1a,LOC107678553,LOC107708467 coding downstream 467571 24429672 ~ 24446638 (+)
LOC103040903 NA coding downstream 533552 24495653 ~ 24507303 (+)
G218743 NA non-coding upstream 13262 23945558 ~ 23945812 (+)
G218742 NA non-coding upstream 20800 23938070 ~ 23938274 (+)
G218688 NA non-coding upstream 178570 23780213 ~ 23780504 (+)
G218681 NA non-coding upstream 195637 23763218 ~ 23763437 (+)
G218680 NA non-coding upstream 196314 23762247 ~ 23762760 (+)
G218754 NA non-coding downstream 49774 24011875 ~ 24019458 (+)
G218795 sfxn3,LOC103040609,LOC108263463,LOC108441766,LOC107708462,LOC107678536,LOC105911632 non-coding downstream 120838 24082939 ~ 24091553 (+)
G218799 NA non-coding downstream 172075 24134176 ~ 24137086 (+)
G218836 NA non-coding downstream 319604 24281705 ~ 24282056 (+)
G218841 NA non-coding downstream 355541 24317642 ~ 24318194 (+)
G218651 NA other upstream 250831 23696577 ~ 23708243 (+)
kcnma1 kcnma1,LOC108263740 other upstream 1140960 22563798 ~ 22818114 (+)
G218351 NA other upstream 1740214 22217299 ~ 22218860 (+)
mark3 mark3 other upstream 1860815 22060963 ~ 22098259 (+)
LOC103032529 prkg1,LOC108443637,LOC108263833,LOC103355670,LOC103373746,LOC107665604,LOC107747254 other upstream 3543431 20335947 ~ 20415643 (+)
LOC103041715 zgc:154058,LOC103041715,LOC108441772,LOC107733751,LOC107690163,LOC107570530,LOC107582519,LOC103387327,LOC107708463,LOC108263524 other downstream 19034 23981135 ~ 24028981 (+)
G218758 NA other downstream 97110 24059211 ~ 24063788 (+)
fam213a fam213a,fam213aa,LOC107690162,LOC107733773,LOC107582522 other downstream 102394 24064495 ~ 24071626 (+)
LOC103046104 LOC108441759 other downstream 481190 24443291 ~ 24466867 (+)
G219050 NA other downstream 880201 24842302 ~ 24842533 (+)

Expression


Co-expression Network