CI01000009_02239426_02240738


Basic Information

Item Value
gene id CI01000009_02239426_02240738
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2239421 ~ 2240796 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU59629
TGACCACAGGCTGTTGCAGATGCACCATGGTTCTTTACGCTTTTCTTCTTCTCCTTTGTATCCCTTTGGCTGGTGGGATGGAGAGTGGTATTATTGGTGGAAAAGAGGCTAAACCTCATTCCAGACCATACATGGCATCTATTCAGATTAAAAAATACAACAAACATCACACATGTGGAGGGATGCTGATCAGAGAGGATTATGTACTGACAGCGGCCCACTGTTTCAATCGCAGTGACTACTCTGGTCGGGACCACTTGGAGGTTGTTCTGGGAGCTCACAACATCAAGAAGGATGAGAAGAGCCAGCAGAGAATCCCAGTTATAAAATACATCCGACATCCTAAATTTCAACGTAATAATGAGAAGGACTACAGCTATGATATCATGTTACTAAAGCTGAAGAACAAAGCCAAGCTGAATAAATTTGTGA
>TU59634
TGACCACAGGCTGTTGCAGATGCACCATGGTTCTTTACGCTTTTCTTCTTCTCCTTTGTATCCCTTTGGCTGGTGGGATGGAGAGTGGTATTATTGGTGGAAAAGAGGCTAAACCTCATTCCAGACCATACATGGCATCTATTCAGATTACAAAATACAACAAACTTCACACATGTGGAGGGATGCTGATCAGAGAGGATTATGTACTGACAGCGGCCCACTGTTTCAAGCGCAGTGACTACTCTGGTCGGGACTACTTGGAGGTTGTTCTGGGAGCTCACAACATCAAGAAGGACGAGAAGAGCCAGCAGAGAATCCCAGTGATAAAATACATCCGACATCCTAAATTTCAACATAAAAATGAGAATAATAATGACTACAGCTATGATATCATGCTACTAAAGCTGAAGAACAAAGCCAAGCTGAATAAATTTGTGA
>TU59630
TGACCACAGGCTGTTGCAGATGCACCATGGTTCTTTACGCTTTTCTTCTTCTCCTTTGTATCCCTTTGGCTGGTGGGATGGAGAGTGGTATTATTGGTGGAAAAGAGGCTAAACCTCATTCCAGACCATACATGGCATCTATTCAGATTAAAAAATACAACAAACATCACACATGTGGAGGGATGCTGATCAGAGAGGATTATGTACTGACAGCGGCCCACTGTTTCAATCGCAGTGACTACTCTGGTCGGGACCACTTGGAGGTTGTTCTGGGAGCTCACAACATCAAGAAGGAT
>CI01000009_02239426_02240738.mRNA
AGTATTTTGATAGCATATCCTTACTCAATAGTTGACCACAGGCTGTTGCAGATGCACCATGGTTCTTTACGCTTTTCTTCTTCTCCTTTGTATCCCTTTGGCTGGTGGGATGGAGAGTGGTATTATTGGTGGAAAAGAGGCTAAACCTCATTCCAGACCATACATGGCATCTATTCAGATTACAAAATACAACAAACTTCACACATGTGGAGGGATGCTGATCAGAGAGGATTATGTACTGACAGCGGCCCACTGTTTCAAGCGCAGTGACTACTCTGGTCGGGACTACTTGGAGGTTGTTCTGGGAGCTCACAACATCAAGAAGGACGAGAAGAGCCAGCAGAGAATCCCAGTGATAAAATACATCCGACATCCTAAATTTCAACATAAAAATGAGAATAATAATGACTACAGCTATGATATCATGCTACTAAAGCTGAAGAACAAAGCCAAGCTGAATAAATTTGTGGACGTGATGCCTCTTCCTGAGAAAAATGAAAAAACACCAGCTAATGTTAATCAATGCTCTATTGCTGGTTGGGGGTTTGAAACCAGAAAAGCAGAAGTGGGGTCAAATGTGCTGCGGGAAGTCACTCTTAAACTGCAGAAGAACTCAGAATGTGAAAGAATGTGGCAGCACTACTTCAACTCTGAGAGAATGATCTGTGGTGTTTCAGATGGGAAACATGCTTTTTGTCAGGGTGATTCAGGAAGTCCTCTTATCTGCAATAACATACCATTAGCAATTGCTTCATATACCTATGGTGGTAACTGTGCAAATAAAACATATCCTCAAGTTTATGTAAACATATCCCACTTTCTCCCCTGGATTAAAAAGAAGATTGGTTAAATAAA
>TU59632
GGTATTATTGGTGGAAAAGAGGCTAAACCTCATTCCAGACCATACATGGCATCTATTCAGATTACAAAATACAACAAACTTCACACATGTGGAGGGATGCTGATCAGAGAGGATTATGTACTGACAGCGGCCCACTGTTTCAAGCGCAGTGACTACTCTGGTCGGGACTACTTGGAGGTTGTTCTGGGAGCTCACAACATCAAGAAGGACGAGAAGAGCCAGCAGAGAATCCCAGTGATAAAATACATCCGACATCCTAAATTTCAACATAAAAATGAGAATAATAATGACTACAGCTATGATATCATGCTACTAAAGCTGAAGAACAAAGCCAAGCTGAATAAATTTGTGGACGTGATGCCTCTTCCTGAGAAAAATGAAAAAACACCAGCTAATGTTAATCAATGCTCTATTGCTGGTTGGGGGTTTGAAACCAGAAAAGCAGAAGTGGGGTCAAATGTGCTGCGGGAAGTCACTCTTAAACTGCAGAAGAACTCAGAATGTGAAAGAATGTGGCAGCACTACTTCAACTCTGAGAGAATGATCTGTGGTGTTTCAGATGGGAAACATGCTTTTTGTCAGGGTGATTCAGGAAGTCCTCTTATCTGCAATAACATACCATTAGCAATTGCTTCATATACCTATGGTGGTAACTGTGCAAATAAAACATATCCTCAAGTTTATGTAAACATATCCCA
>TU59631
TGACCACAGGCTGTTGCAGATGCACCATGGTTCTTTACGCTTTTCTTCTTCTCCTTTGTATCCCTTTGGCTGGTGGGATGGAGAGTGGTATTATTGGTGGAAAAGAGGCTAAACCTCATTCCAGACCATACATGGCATCTATTCAGATTACAAAATACAACAAACTTCACACATGTGGAGGGATGCTGATCAGAGAGGATTATGTACTGACAGCGGCCCACTGTTTCAAGCGCAGTGACTACTCTGGTCGGGACTACTTGGAGGTTGTTCTGGGAGCTCACAACATCAAGAAGGACGAGAAGAGCCAGCAGAGAATCCCAGTGATAAAATACATCCGACATCCTAAATTTCAACATAAAAATGAGAATAATAATGACTACAGCTATGATATCATGCTACTAAAGCTGAAGAACAAAGCCAAGCTGAATAAATTTGTGGACGTGATGCCTCTTCCTGAGAAAAATGAAAAAACA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59629 False 72 TUCP 0.41 1 2240693 2240764
TU59634 False 404 TUCP 0.34 3 2240019 2240764
TU59630 True 72 TUCP 0.46 1 2240693 2240764
CI01000009_02239426_02240738.mRNA False 855 mRNA 0.41 5 2239421 2240796
TU59632 False 698 TUCP 0.41 4 2239460 2240479
TU59631 False 473 TUCP 0.61 4 2239880 2240764

Neighbor

gene id symbol gene type direction distance location
CI01000009_02237301_02238365 NA coding downstream 549 2237301 ~ 2238872 (-)
CI01000009_02228671_02232977 DNAJB11.S, DNAJB11 coding downstream 6444 2227624 ~ 2232977 (-)
CI01000009_02167959_02200058 SATB2 coding downstream 39363 2167363 ~ 2200058 (-)
CI01000009_02001400_02018841 RFTN2 coding downstream 218780 2000456 ~ 2020641 (-)
CI01000009_01981245_01988092 HSPD1 coding downstream 251329 1980696 ~ 1988092 (-)
CI01000009_02247894_02249252 NA coding upstream 6978 2247774 ~ 2249286 (-)
CI01000009_02251416_02262823 ERCC1 coding upstream 10365 2251161 ~ 2262823 (-)
CI01000009_02286191_02288884 OLIG1 coding upstream 45364 2286160 ~ 2288981 (-)
CI01000009_02300395_02301213 OLIG2 coding upstream 59313 2300109 ~ 2301637 (-)
CI01000009_02327693_02335035 NA coding upstream 86897 2327693 ~ 2335035 (-)
G52342 NA non-coding downstream 23886 2214952 ~ 2215535 (-)
G52338 NA non-coding downstream 81675 2157412 ~ 2157746 (-)
G52230 NA non-coding downstream 143369 2094368 ~ 2096052 (-)
G52222 NA non-coding downstream 247435 1990621 ~ 1991986 (-)
G52274 NA non-coding downstream 263593 1974202 ~ 1975828 (-)
G52371 NA non-coding upstream 147518 2388314 ~ 2388539 (-)
G52328 NA non-coding upstream 159018 2399814 ~ 2400894 (-)
G52330 NA non-coding upstream 160239 2401035 ~ 2401380 (-)
G52378 NA non-coding upstream 186453 2427249 ~ 2427848 (-)
G52379 NA non-coding upstream 207570 2448366 ~ 2451640 (-)
G52098 NA other downstream 831794 1401932 ~ 1407627 (-)
G52410 NA other upstream 310928 2551724 ~ 2562533 (-)
CI01000009_02885473_02893975 NA other upstream 642892 2883688 ~ 2893975 (-)
CI01000009_03261739_03262843 NA other upstream 1020407 3261038 ~ 3262843 (-)
G52828 NA other upstream 1976624 4217420 ~ 4231469 (-)
G53515 NA other upstream 3261599 5502395 ~ 5505248 (-)

Expression


Co-expression Network